mRNA_Ecto-sp9_F_contig10888.767.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10888.767.1
Unique NamemRNA_Ecto-sp9_F_contig10888.767.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J837_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.360e-52
Identity = 87/96 (90.62%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVKEGRLF 288
            EAPNARIHFFTGTLTLH GAGGPQDDSGEG   GTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKV    +F
Sbjct:   77 EAPNARIHFFTGTLTLHDGAGGPQDDSGEGGGGGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVTNKIMF 172
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.530e-49
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVKEGRLF 288
            EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKV    +F
Sbjct:  219 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVTNKIMF 314
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.530e-22
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLH---GGAGG-----PQDDSGEGXXXGTGS-----RDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKV 270
            E PN RIHFFTGTL +    G AGG     P  DS  G XX         R+VPVDQSN+L+RG+ L+NT+WA+G+V YTG+E+KI +NARS PSK+SN+D+V
Sbjct:  315 ERPNPRIHFFTGTLRVAERGGTAGGVATPAPSVDSEGGGXXXXXXXXXXMREVPVDQSNVLMRGSSLKNTRWALGLVVYTGKETKIIKNARSAPSKRSNVDRV 417
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.430e-17
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVKEGRLF 288
            EAPNARIH +TGTLTL     G +             R V V Q+NLLLRG+RLRNT+WA+G+  YTG ++KI  N+R+ PSK S ++ V   RL 
Sbjct:  308 EAPNARIHSYTGTLTLLSKGPGER-------------RRVAVSQANLLLRGSRLRNTQWALGLAVYTGAQTKIVMNSRTAPSKLSAIE-VTTNRLL 389
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.380e-17
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVKEGRLF 288
            E PN+ IH F+G L                     G+R+ PVD+SNLLLRG+ +RNTKW +G+V YTGR++KI QN+R  PSK S ++      L+
Sbjct:  225 ELPNSHIHSFSGVLRHE----------------KEGNRETPVDESNLLLRGSSVRNTKWVLGLVVYTGRDTKIVQNSREAPSKLSTVEHTVNNMLY 304
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (atpase id n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ71_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.390e-16
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLH------GGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLD 264
            E PN +I  FTGT  +          G PQ         G  ++ +P+D  N+LLRGA LRNT+WA+GVV YTG+++K+ +N+R  PSK S +D
Sbjct:  157 ELPNMKIESFTGTFCISHKEEHVSSEGAPQS--------GDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKID 242
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.760e-15
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLH------GGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLD 264
            E PN +I  FTGT  +          G PQ         G  ++ +P+D  N+LLRGA LRNT+WA+GVV YTG+++K+ +N+R  PSK S +D
Sbjct:  220 ELPNMKIESFTGTFCIPHKEEHVSSEGAPQS--------GDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKID 305
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S8L0_PHATR)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-14
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKV 270
            E PN  +H F+G LTL      P   +GE         D+P+   N+LLRGA LRNT+WAIGV  +TG ++K+ QN+   PSK S LD++
Sbjct:   28 EPPNPSVHTFSGKLTL------PPFKTGESPI------DIPLGADNVLLRGAVLRNTEWAIGVAFFTGTDTKLIQNSFETPSKFSVLDRL 105
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BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FZG2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.850e-14
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKV 270
            E P+A I+ F+G LT+        +D  +G     G   +P+   +LLLRGA LRNT+W IG+V+YTG ++K++QN+   PSK S LD V
Sbjct:  210 EPPDAHINTFSGKLTMPISVTATDNDGADGTD---GGEIIPLGSDHLLLRGAVLRNTEWVIGIVSYTGTDTKLSQNSIDAPSKFSQLDLV 296
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYR3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.080e-13
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 EAPNARIHFFTGTLTLHGGAGGPQDDSGEGXXXGTGSR--DVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLD 264
            EAPNA I+ FTG L++       ++     XX  T +    +P+D  NLLLRGA LRNT+WAIGVVA+TG ++K++QN+   P+K S LD
Sbjct:  256 EAPNAHINTFTGKLSIPTTTIMEEEKDXXXXXRNTNNSISHIPLDGDNLLLRGAILRNTEWAIGVVAFTGTDTKLSQNSIEAPTKFSQLD 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10888.767.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.360e-5290.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Phospholipid-transporting2.530e-4994.79ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Phospholipid-transporting4.530e-2255.34ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Phospholipid-transporting2.430e-1748.96ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Phospholipid-transporting8.380e-1742.71ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Phospholipid-transporting9.390e-1642.55atpase id n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
Phospholipid-transporting4.760e-1542.55ATPase n=1 Tax=Nannochloropsis salina CCMP1776 Tax... [more]
Hypothetical1.070e-1444.44protein (Fragment) n=1 Tax=Phaeodactylum tricornut... [more]
Phospholipid-transporting7.850e-1443.33ATPase (Fragment) n=1 Tax=Fragilariopsis cylindrus... [more]
Phospholipid-transporting1.080e-1347.78ATPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10888contigEcto-sp9_F_contig10888:117..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue4.9e-42
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
Ec32 ortholog descriptionP-type ATPase, subfamily IV
Ec32 orthologEc-10_001840.1
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928309.714445-CDS-Ecto-sp9_F_contig10888:116..4071622928309.714445-CDS-Ecto-sp9_F_contig10888:116..407Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10888 117..407 +
1692277830.2998095-CDS-Ecto-sp9_F_contig10888:116..4071692277830.2998095-CDS-Ecto-sp9_F_contig10888:116..407Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10888 117..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10888.767.1prot_Ecto-sp9_F_contig10888.767.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10888 117..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10888.767.1

>prot_Ecto-sp9_F_contig10888.767.1 ID=prot_Ecto-sp9_F_contig10888.767.1|Name=mRNA_Ecto-sp9_F_contig10888.767.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
EAPNARIHFFTGTLTLHGGAGGPQDDSGEGGGGGTGSRDVPVDQSNLLLR
GARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVKEGRLF*
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mRNA from alignment at Ecto-sp9_F_contig10888:117..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10888.767.1 ID=mRNA_Ecto-sp9_F_contig10888.767.1|Name=mRNA_Ecto-sp9_F_contig10888.767.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=291bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10888:117..407+ (Ectocarpus species9 EcSCA_722f female)
GAAGCTCCCAACGCTCGCATTCACTTCTTCACCGGCACCCTCACGCTCCA
CGGCGGGGCGGGGGGGCCGCAAGATGACTCCGGGGAGGGGGGTGGGGGCG
GGACGGGCTCGCGCGACGTCCCCGTGGACCAGAGCAACCTGCTGCTGCGG
GGGGCGAGGCTGAGGAACACGAAGTGGGCGATCGGGGTGGTGGCGTACAC
GGGAAGGGAGTCGAAGATCGCGCAGAACGCTCGATCCGTGCCTTCGAAGC
AGAGCAACCTCGACAAGGTGAAAGAAGGACGCCTGTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10888:117..407+

>mRNA_Ecto-sp9_F_contig10888.767.1 ID=mRNA_Ecto-sp9_F_contig10888.767.1|Name=mRNA_Ecto-sp9_F_contig10888.767.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10888:117..407+ (Ectocarpus species9 EcSCA_722f female)
GAAGCTCCCAACGCTCGCATTCACTTCTTCACCGGCACCCTCACGCTCCA
CGGCGGGGCGGGGGGGCCGCAAGATGACTCCGGGGAGGGGGGTGGGGGCG
GGACGGGCTCGCGCGACGTCCCCGTGGACCAGAGCAACCTGCTGCTGCGG
GGGGCGAGGCTGAGGAACACGAAGTGGGCGATCGGGGTGGTGGCGTACAC
GGGAAGGGAGTCGAAGATCGCGCAGAACGCTCGATCCGTGCCTTCGAAGC
AGAGCAACCTCGACAAGGTGAAAGAAGGACGCCTGTTTTGAGAAGCTCCC
AACGCTCGCATTCACTTCTTCACCGGCACCCTCACGCTCCACGGCGGGGC
GGGGGGGCCGCAAGATGACTCCGGGGAGGGGGGTGGGGGCGGGACGGGCT
CGCGCGACGTCCCCGTGGACCAGAGCAACCTGCTGCTGCGGGGGGCGAGG
CTGAGGAACACGAAGTGGGCGATCGGGGTGGTGGCGTACACGGGAAGGGA
GTCGAAGATCGCGCAGAACGCTCGATCCGTGCCTTCGAAGCAGAGCAACC
TCGACAAGGTGAAAGAAGGACGCCTGTTTTGA
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