mRNA_Ecto-sp9_F_contig1087.758.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1087.758.1
Unique NamemRNA_Ecto-sp9_F_contig1087.758.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1087.758.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1087contigEcto-sp9_F_contig1087:15221..16459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1239
Cds size1239
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928308.5590692-CDS-Ecto-sp9_F_contig1087:15220..164591622928308.5590692-CDS-Ecto-sp9_F_contig1087:15220..16459Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 15221..16459 +
1692277829.7513523-CDS-Ecto-sp9_F_contig1087:15220..164591692277829.7513523-CDS-Ecto-sp9_F_contig1087:15220..16459Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1087 15221..16459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1087.758.1prot_Ecto-sp9_F_contig1087.758.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1087 15221..16459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1087.758.1

>prot_Ecto-sp9_F_contig1087.758.1 ID=prot_Ecto-sp9_F_contig1087.758.1|Name=mRNA_Ecto-sp9_F_contig1087.758.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=413bp
FQDPVDGIVWPRELEVLKFGFPFNHPIKNAVWPASLQQLEFGTHFNQPIQ
GVKWPRSLQKLTLPGLFNQPIDRAVFPASLHCLTFGDAFDQRIDTVLWPA
SLKTLILDGSFNQPIHRVWWPAALERLRLSAEFNQPVHDVKWPPSLHELS
FQEAFNQPIDRVKWPASLKRLVFGFDFNQRIDGVVLPASTQEVRFGTNFN
QPIHRLEWPESVQRLTFGIDFNQPIADVVWPASLEQVEFLANLNESITKV
AWPVSLEELKIGWEFNQQASDVAWPPNLQRLTFCGEFDQPVDGVLLPPSL
RKLHFGRYFNQQVDHVVWPVSLQELCFSTGFNREIYNVSWPVSLLRLTFG
MHFNKAIENASWPESLQTLVFGMRFNQSIRDVFWPESLQTIVFGKCFNQP
VKGVRWPASLQHL
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mRNA from alignment at Ecto-sp9_F_contig1087:15221..16459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1087.758.1 ID=mRNA_Ecto-sp9_F_contig1087.758.1|Name=mRNA_Ecto-sp9_F_contig1087.758.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1239bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:15221..16459+ (Ectocarpus species9 EcSCA_722f female)
TTCCAGGATCCTGTGGACGGAATCGTGTGGCCACGTGAGCTTGAGGTATT
GAAATTCGGATTTCCTTTCAATCACCCTATCAAGAATGCGGTGTGGCCAG
CATCTCTACAGCAGCTAGAGTTTGGAACTCACTTCAACCAGCCTATTCAA
GGCGTCAAATGGCCGCGCTCGTTGCAAAAGTTGACCTTACCAGGGTTATT
CAACCAGCCCATTGACAGGGCTGTGTTCCCGGCATCACTCCACTGCCTGA
CGTTCGGCGACGCCTTCGACCAGCGCATTGATACGGTGTTGTGGCCAGCA
TCGCTTAAGACATTGATCTTGGATGGAAGCTTCAACCAACCGATTCACCG
CGTATGGTGGCCGGCTGCGCTGGAGAGGCTAAGACTCTCAGCGGAGTTCA
ATCAGCCAGTACACGACGTAAAGTGGCCACCTTCACTTCACGAGCTGAGC
TTCCAGGAGGCTTTCAATCAACCCATCGACCGTGTCAAATGGCCAGCGTC
TTTGAAGAGACTGGTCTTCGGGTTCGACTTCAATCAGCGGATTGACGGGG
TTGTTCTCCCAGCTTCGACGCAGGAGGTTAGGTTCGGGACCAACTTCAAT
CAGCCGATCCATAGGCTCGAATGGCCTGAGTCCGTCCAGAGGCTTACCTT
TGGGATTGATTTTAACCAACCTATTGCCGACGTAGTGTGGCCAGCTTCAC
TGGAGCAGGTGGAGTTCTTAGCAAATTTGAACGAATCCATCACGAAGGTT
GCGTGGCCAGTCTCGCTGGAGGAGCTGAAGATCGGGTGGGAGTTCAATCA
GCAGGCCAGTGATGTCGCGTGGCCCCCAAATCTGCAACGACTGACCTTCT
GCGGGGAGTTTGACCAGCCAGTCGACGGTGTTTTGTTGCCACCGTCACTG
CGGAAGCTGCACTTCGGGCGTTACTTCAACCAGCAGGTGGACCACGTCGT
GTGGCCTGTGTCACTACAGGAGCTGTGCTTTTCAACGGGCTTCAACCGGG
AGATCTACAACGTATCCTGGCCGGTATCTCTACTCAGGCTGACCTTCGGC
ATGCACTTCAACAAGGCGATCGAAAACGCTTCGTGGCCGGAATCGCTGCA
AACGTTAGTGTTTGGCATGCGCTTTAACCAGTCGATTCGGGACGTTTTCT
GGCCAGAATCTCTGCAGACGATAGTTTTTGGCAAGTGCTTCAACCAACCG
GTGAAAGGCGTGCGGTGGCCGGCATCGCTGCAACATCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1087:15221..16459+

>mRNA_Ecto-sp9_F_contig1087.758.1 ID=mRNA_Ecto-sp9_F_contig1087.758.1|Name=mRNA_Ecto-sp9_F_contig1087.758.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2478bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1087:15221..16459+ (Ectocarpus species9 EcSCA_722f female)
TTCCAGGATCCTGTGGACGGAATCGTGTGGCCACGTGAGCTTGAGGTATT
GAAATTCGGATTTCCTTTCAATCACCCTATCAAGAATGCGGTGTGGCCAG
CATCTCTACAGCAGCTAGAGTTTGGAACTCACTTCAACCAGCCTATTCAA
GGCGTCAAATGGCCGCGCTCGTTGCAAAAGTTGACCTTACCAGGGTTATT
CAACCAGCCCATTGACAGGGCTGTGTTCCCGGCATCACTCCACTGCCTGA
CGTTCGGCGACGCCTTCGACCAGCGCATTGATACGGTGTTGTGGCCAGCA
TCGCTTAAGACATTGATCTTGGATGGAAGCTTCAACCAACCGATTCACCG
CGTATGGTGGCCGGCTGCGCTGGAGAGGCTAAGACTCTCAGCGGAGTTCA
ATCAGCCAGTACACGACGTAAAGTGGCCACCTTCACTTCACGAGCTGAGC
TTCCAGGAGGCTTTCAATCAACCCATCGACCGTGTCAAATGGCCAGCGTC
TTTGAAGAGACTGGTCTTCGGGTTCGACTTCAATCAGCGGATTGACGGGG
TTGTTCTCCCAGCTTCGACGCAGGAGGTTAGGTTCGGGACCAACTTCAAT
CAGCCGATCCATAGGCTCGAATGGCCTGAGTCCGTCCAGAGGCTTACCTT
TGGGATTGATTTTAACCAACCTATTGCCGACGTAGTGTGGCCAGCTTCAC
TGGAGCAGGTGGAGTTCTTAGCAAATTTGAACGAATCCATCACGAAGGTT
GCGTGGCCAGTCTCGCTGGAGGAGCTGAAGATCGGGTGGGAGTTCAATCA
GCAGGCCAGTGATGTCGCGTGGCCCCCAAATCTGCAACGACTGACCTTCT
GCGGGGAGTTTGACCAGCCAGTCGACGGTGTTTTGTTGCCACCGTCACTG
CGGAAGCTGCACTTCGGGCGTTACTTCAACCAGCAGGTGGACCACGTCGT
GTGGCCTGTGTCACTACAGGAGCTGTGCTTTTCAACGGGCTTCAACCGGG
AGATCTACAACGTATCCTGGCCGGTATCTCTACTCAGGCTGACCTTCGGC
ATGCACTTCAACAAGGCGATCGAAAACGCTTCGTGGCCGGAATCGCTGCA
AACGTTAGTGTTTGGCATGCGCTTTAACCAGTCGATTCGGGACGTTTTCT
GGCCAGAATCTCTGCAGACGATAGTTTTTGGCAAGTGCTTCAACCAACCG
GTGAAAGGCGTGCGGTGGCCGGCATCGCTGCAACATCTGTTCCAGGATCC
TGTGGACGGAATCGTGTGGCCACGTGAGCTTGAGGTATTGAAATTCGGAT
TTCCTTTCAATCACCCTATCAAGAATGCGGTGTGGCCAGCATCTCTACAG
CAGCTAGAGTTTGGAACTCACTTCAACCAGCCTATTCAAGGCGTCAAATG
GCCGCGCTCGTTGCAAAAGTTGACCTTACCAGGGTTATTCAACCAGCCCA
TTGACAGGGCTGTGTTCCCGGCATCACTCCACTGCCTGACGTTCGGCGAC
GCCTTCGACCAGCGCATTGATACGGTGTTGTGGCCAGCATCGCTTAAGAC
ATTGATCTTGGATGGAAGCTTCAACCAACCGATTCACCGCGTATGGTGGC
CGGCTGCGCTGGAGAGGCTAAGACTCTCAGCGGAGTTCAATCAGCCAGTA
CACGACGTAAAGTGGCCACCTTCACTTCACGAGCTGAGCTTCCAGGAGGC
TTTCAATCAACCCATCGACCGTGTCAAATGGCCAGCGTCTTTGAAGAGAC
TGGTCTTCGGGTTCGACTTCAATCAGCGGATTGACGGGGTTGTTCTCCCA
GCTTCGACGCAGGAGGTTAGGTTCGGGACCAACTTCAATCAGCCGATCCA
TAGGCTCGAATGGCCTGAGTCCGTCCAGAGGCTTACCTTTGGGATTGATT
TTAACCAACCTATTGCCGACGTAGTGTGGCCAGCTTCACTGGAGCAGGTG
GAGTTCTTAGCAAATTTGAACGAATCCATCACGAAGGTTGCGTGGCCAGT
CTCGCTGGAGGAGCTGAAGATCGGGTGGGAGTTCAATCAGCAGGCCAGTG
ATGTCGCGTGGCCCCCAAATCTGCAACGACTGACCTTCTGCGGGGAGTTT
GACCAGCCAGTCGACGGTGTTTTGTTGCCACCGTCACTGCGGAAGCTGCA
CTTCGGGCGTTACTTCAACCAGCAGGTGGACCACGTCGTGTGGCCTGTGT
CACTACAGGAGCTGTGCTTTTCAACGGGCTTCAACCGGGAGATCTACAAC
GTATCCTGGCCGGTATCTCTACTCAGGCTGACCTTCGGCATGCACTTCAA
CAAGGCGATCGAAAACGCTTCGTGGCCGGAATCGCTGCAAACGTTAGTGT
TTGGCATGCGCTTTAACCAGTCGATTCGGGACGTTTTCTGGCCAGAATCT
CTGCAGACGATAGTTTTTGGCAAGTGCTTCAACCAACCGGTGAAAGGCGT
GCGGTGGCCGGCATCGCTGCAACATCTG
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