mRNA_Ecto-sp9_F_contig10844.731.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10844.731.1
Unique NamemRNA_Ecto-sp9_F_contig10844.731.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Sister (chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 8.070e-157
Identity = 251/265 (94.72%), Postives = 256/265 (96.60%), Query Frame = 1 
Query:   37 IPTSRKAATTSAAEADGEESEGXDGNALXXXXXXXXXXRGAENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVQLHLTPT 831
            IPTSRKAATTSAAEADGEESEG DGNAL XXXXXXXXXRGAENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLN +FLACGAPSTEGPYGPPS+VSVIEMDGEQWVELLKVV+EDMQGQPGTKG PSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGL EKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQV+   + T
Sbjct:  166 IPTSRKAATTSAAEADGEESEGEDGNALGXXXXXXXXXRGAENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNFVFLACGAPSTEGPYGPPSDVSVIEMDGEQWVELLKVVIEDMQGQPGTKGAPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLREKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERVFSAT 430
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: SCD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 2.480e-96
Identity = 170/206 (82.52%), Postives = 183/206 (88.83%), Query Frame = 1 
Query:  226 VSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNY----CEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVQLHLTPT 831
            VSSYK+DSDKAM+ELLN IFLACGAPST GPYGPP++VSVIEMDGEQW ELLKVV+EDMQGQPGTKGVPSFPLAPAAKGKSGK       N       + + L EACRRGDDHDASTLEAVVG+LVAL+SHSASQDIRLAATLAGME+GLGVAE+LAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQV+  L+ T
Sbjct:    3 VSSYKKDSDKAMQELLNFIFLACGAPSTAGPYGPPADVSVIEMDGEQWAELLKVVIEDMQGQPGTKGVPSFPLAPAAKGKSGKVVATSLDNLPVLRTILTSGLVEACRRGDDHDASTLEAVVGVLVALASHSASQDIRLAATLAGMEVGLGVAEDLAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERILSAT 208
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: SCD (domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8S9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.750e-11
Identity = 60/218 (27.52%), Postives = 107/218 (49.08%), Query Frame = 1 
Query:  169 LMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTL-EAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVQLH 819
            L EA+    T L +++S+W   ++ED++KA +E+LNL+ LACG  S   P   P  ++ ++M+      L+  VVED++   G      +P+    +G      + F+ N+ E +  L + C   +    S +    +  L  LSS S  + IR  +T+A + +   +    A + E+L ++ RQL A  +S G   G + +   RK+  L+    L+
Sbjct:  126 LFEAIKSRKTPLENLLSEWRERFEEDNEKATREVLNLVLLACGGTSPCVPESEP--LAQLDMNMSH---LMDHVVEDLENANG-----EYPIMSRGRG-----TKKFQRNFEEFWEVLVKECYESEILFTSEIANTFIDWLTTLSS-SELRPIRHTSTVAILALSNSLVRTAASISEQLAIATRQLNAETNSPGTTPGSRKSPNIRKVALLKENKVLY 327
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Stromal (antigen 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2Q431_CYPCA)

HSP 1 Score: 64.3 bits (155), Expect = 6.770e-8
Identity = 57/205 (27.80%), Postives = 91/205 (44.39%), Query Frame = 1 
Query:  202 LSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVQL 816
            LSSV+ DW+ SYK+D D A+ +L+N      G   T         V +      Q  E+++ + E+     G      +PL  A     G   + FR N+CE    L   C+    +D   ++ V+ +L  LS  S  +  R  +TLA M++   +      L      ++RQ EA ++   K  GK+A EK   +  LE + +L
Sbjct:   90 LSSVIDDWIESYKQDRDLALLDLINFFIHCSGCKGT---------VRIEMFRNMQNAEIIRKMTEEFDEDSG-----DYPLTMA-----GPQWKKFRYNFCEFIMVLVRQCQYSIIYDEYMMDTVISLLTGLSD-SQVRAFRHTSTLAAMKLMTALVNVALNLSINQDNTQRQYEAERN---KVAGKRANEKLELL--LEKRKEL 269
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Stromal (antigen 1 n=1 Tax=Falco tinnunculus TaxID=100819 RepID=A0A8C4XTJ5_FALTI)

HSP 1 Score: 63.9 bits (154), Expect = 8.460e-8
Identity = 50/180 (27.78%), Postives = 77/180 (42.78%), Query Frame = 1 
Query:  190 NDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEA 729
            ND   SSVV DW+ SYK+D D A+ +L+N      G   T         V +      Q  E+++ + E+     G      +PL        G   + FRSN+CE    L   C+    +D   ++ V+ +L  LS  S  +  R  +TLA M++   +      L      ++RQ EA
Sbjct:    2 NDAYSSSVVDDWIESYKQDRDIALLDLINFFIQCSGCRGT---------VRIEMFRNMQNAEIIRKMTEEFDEDSG-----DYPLT-----MPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSD-SQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEA 161
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Stromal (antigen 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2Q3M1_CYPCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.220e-7
Identity = 56/206 (27.18%), Postives = 92/206 (44.66%), Query Frame = 1 
Query:  199 ALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVQL 816
            ++SSV+ DW+ SYK+D D A+ +L+N      G   T         V +      Q  E+++ + E+     G      +PL  A     G   + FR N+CE    L   C+    +D   ++ V+ +L  LS  S  +  R  +TLA M++   +      L      ++RQ EA ++   K  GK+A EK   +  LE + +L
Sbjct:   91 SVSSVIDDWIESYKQDRDLALLDLINFFIHCSGCKGT---------VRIEMFRNMQNAEIIRKMTEEFDEDSG-----DYPLTMA-----GPQWKKFRYNFCEFIMVLVRQCQYSIIYDEYMMDTVISLLTGLSD-SQVRAFRHTSTLAAMKLMTALVNVALNLSINQDNTQRQYEAERN---KVAGKRANEKLELL--LEKRKEL 271
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Stromal (antigen 1 n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CZ64_9AVES)

HSP 1 Score: 61.2 bits (147), Expect = 6.880e-7
Identity = 48/175 (27.43%), Postives = 75/175 (42.86%), Query Frame = 1 
Query:  205 SSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEA 729
            SSVV DW+ SYK+D D A+ +L+N      G   T         V +      Q  E+++ + E+     G      +PL        G   + FRSN+CE    L   C+    +D   ++ V+ +L  LS  S  +  R  +TLA M++   +      L      ++RQ EA
Sbjct:   23 SSVVDDWIESYKQDRDIALLDLINFFIQCSGCRGT---------VRIEMFRNMQNAEIIRKMTEEFDEDSG-----DYPLT-----MPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSD-SQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEA 177
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BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: BY (PROTMAP: gi|472587509|gb|EMS25005.1| cohesin complex subunit SA-1/2 [Rhodosporidium toruloides NP11] gi|647398558|emb|CDR42575.1| RHTO0S07e01508g1_1 [Rhodosporidium toruloides] n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CDJ1_RHOTO)

HSP 1 Score: 61.2 bits (147), Expect = 7.320e-7
Identity = 47/149 (31.54%), Postives = 71/149 (47.65%), Query Frame = 1 
Query:  160 ENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDD-HDASTLEAVVGMLVALSS 603
            +NGL  AV   +TAL +VV DW+ SYKEDS  AM EL+N +   CG  +T   +       +        VE LK +V++ + +       ++PL   +K K+ K    FRS+  +  ++L       D  +  S  E     + ALSS
Sbjct:  152 DNGLFNAVKDPNTALKTVVEDWIESYKEDSGPAMAELVNFVLRCCGCNATIDEHQAEDENGI--------VENLKDIVDEFKQETNL----AYPLI--SKSKTYKK---FRSSLAQFLSKLVSETAVDDMLYSTSFFEQFQSWVHALSS 283
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: SCD (domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGD9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.720e-7
Identity = 52/195 (26.67%), Postives = 90/195 (46.15%), Query Frame = 1 
Query:  160 ENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEA-VVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSS 741
            E  L EA+ R   +L  +VS W   ++++S+KA KE+LNL+   CG      P   P       +D  +  +L+  V+ED++   G   + S           GK A+ F+ ++   +    + C   +    S +    +  L  LSS S  + IR  +T+A + +   +    A + E+L +++RQL A  SS
Sbjct:  143 EKSLFEAIKRGKVSLDDLVSKWRIRFEKNSEKATKEVLNLVLQTCGGAGQCVPESKP-------LDQLEMGDLVNHVLEDLENVNGEYLISS----------RGKSAKKFQRHFEGFWEAFVKECYESEILLTSDVAYNFIDWLTTLSS-SELRPIRHTSTVAVLALSSALVRTAASISEQLTITKRQLNAETSS 319
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Match: Cohesin (complex subunit SA-1/2 n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KHU5_RHOTO)

HSP 1 Score: 60.8 bits (146), Expect = 9.810e-7
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:  160 ENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGAPSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAPAAKGKSGKPARIFRSNYCEVFNRL 522
            +NGL  AV   +TAL +VV DW+ SYKEDS  AM EL+N I   CG  ST   +       +        VE LK +V++ + +       + PL   +K K+ K    FRS+  +  ++L
Sbjct:  150 DNGLFNAVKDPNTALKTVVEDWIESYKEDSGPAMAELVNFILRCCGCNSTIDEHQAEDENGI--------VENLKDIVDEFKQETNM----AHPLI--SKSKTYKK---FRSSLAQFLSKL 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10844.731.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Sister8.070e-15794.72chromatid cohesion complex Cohesin, subunit STAG/I... [more]
SCD2.480e-9682.52domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SCD7.750e-1127.52domain-containing protein n=1 Tax=Phytophthora meg... [more]
Stromal6.770e-827.80antigen 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepI... [more]
Stromal8.460e-827.78antigen 1 n=1 Tax=Falco tinnunculus TaxID=100819 R... [more]
Stromal1.220e-727.18antigen 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepI... [more]
Stromal6.880e-727.43antigen 1 n=1 Tax=Anser brachyrhynchus TaxID=13258... [more]
BY7.320e-731.54PROTMAP: gi|472587509|gb|EMS25005.1| cohesin compl... [more]
SCD9.720e-726.67domain-containing protein n=2 Tax=Peronospora effu... [more]
Cohesin9.810e-734.71complex subunit SA-1/2 n=1 Tax=Rhodosporidium toru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10844contigEcto-sp9_F_contig10844:138..3598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.5
Seed ortholog evalue1.1e-126
Seed eggNOG ortholog2880.D7G0R2
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size834
Cds size834
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10844.731.1prot_Ecto-sp9_F_contig10844.731.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10844 138..3598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.2028468-CDS-Ecto-sp9_F_contig10844:137..3171622928306.2028468-CDS-Ecto-sp9_F_contig10844:137..317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 138..317 -
1692277828.661894-CDS-Ecto-sp9_F_contig10844:137..3171692277828.661894-CDS-Ecto-sp9_F_contig10844:137..317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 138..317 -
1622928306.2352433-CDS-Ecto-sp9_F_contig10844:717..8971622928306.2352433-CDS-Ecto-sp9_F_contig10844:717..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 718..897 -
1692277828.6745472-CDS-Ecto-sp9_F_contig10844:717..8971692277828.6745472-CDS-Ecto-sp9_F_contig10844:717..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 718..897 -
1622928306.276032-CDS-Ecto-sp9_F_contig10844:1567..17081622928306.276032-CDS-Ecto-sp9_F_contig10844:1567..1708Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 1568..1708 -
1692277828.6831605-CDS-Ecto-sp9_F_contig10844:1567..17081692277828.6831605-CDS-Ecto-sp9_F_contig10844:1567..1708Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 1568..1708 -
1622928306.291098-CDS-Ecto-sp9_F_contig10844:1867..19751622928306.291098-CDS-Ecto-sp9_F_contig10844:1867..1975Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 1868..1975 -
1692277828.691696-CDS-Ecto-sp9_F_contig10844:1867..19751692277828.691696-CDS-Ecto-sp9_F_contig10844:1867..1975Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 1868..1975 -
1622928306.3099308-CDS-Ecto-sp9_F_contig10844:3373..35981622928306.3099308-CDS-Ecto-sp9_F_contig10844:3373..3598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 3374..3598 -
1692277828.7017734-CDS-Ecto-sp9_F_contig10844:3373..35981692277828.7017734-CDS-Ecto-sp9_F_contig10844:3373..3598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10844 3374..3598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10844.731.1

>prot_Ecto-sp9_F_contig10844.731.1 ID=prot_Ecto-sp9_F_contig10844.731.1|Name=mRNA_Ecto-sp9_F_contig10844.731.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=278bp
QKKARGRKSTGGIPTSRKAATTSAAEADGEESEGEDGNALGGAVGGGMGG
RGAENGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNLIFLACGA
PSTEGPYGPPSNVSVIEMDGEQWVELLKVVVEDMQGQPGTKGVPSFPLAP
AAKGKSGKPARIFRSNYCEVFNRLAEACRRGDDHDASTLEAVVGMLVALS
SHSASQDIRLAATLAGMEMGLGVAEELAGLHEKLGLSERQLEAAKSSAGK
GGGKKAAEKSRKIQGLESQVQLHLTPT*
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mRNA from alignment at Ecto-sp9_F_contig10844:138..3598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10844.731.1 ID=mRNA_Ecto-sp9_F_contig10844.731.1|Name=mRNA_Ecto-sp9_F_contig10844.731.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3461bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10844:138..3598- (Ectocarpus species9 EcSCA_722f female)
CAGAAGAAGGCGAGAGGACGCAAGTCCACGGGCGGCATCCCCACCTCCCG
AAAGGCTGCGACGACATCAGCAGCAGAAGCAGACGGCGAAGAGAGCGAGG
GAGAAGATGGAAACGCCTTGGGAGGAGCAGTCGGCGGCGGGATGGGGGGG
AGAGGGGCGGAGAACGGCCTCATGGAGGCGGTGCTCCGCAACGACACCGC
CCTCTCATCGGTGGTGTCTGACTGGGTAAGGGTAAGGGTAAGGGTATTGT
ACGACAGAGAGTTTTCTTTTGACCGTCCCCAATGATCCTCCCCATGCTGT
AGAGCGAGCGGGCCAGAGCCCTGCACCGCTATAACTCAAGAACCAGACTC
GGGTAGTCCTATTGCTGTAGCGTGAGCCAGCCCTCCGTCGCTACGCTCTG
GCGCGAGAAAAACTAAATAGCGGGATTTTCCGCCCCCAATGGTCCTCCTC
CTGTGGTTGATGTTAAGTTAGCCAGCCTTGCATCGCTACCACAGAAGCCA
GAAGCAGAAGCACCACACCGCTCTCTCTCTCTCTCTCTCGTTGTCCGGCT
GGCCCGGCAGCCGCTGCTGAGGGGGTGAGTCAGCCCTCTTGGTAGGTCAA
GCCCCCCCCTGTTGTCTGGTGCCAGAACCGGTTCTTAGGTGTGCTTTCGC
TCTCTTCGTTACTTTAACGCTTTTGTGGTGTTGATCTTAGGGGTGGTCGC
ACAGGCTGTATACAGCCGCCCGTGGCACTGGTTGGCATGTGATTTTTTGT
GCCCGTTTTCTCCCTGTCCCGGGTTGCTCCGCCAATTCGTTTTCGGTTGC
GTCCGACGGTGACCCGCTAGCTTGTGCCAATGAGGAATTGCCCCCAATAC
AACGAGACGACGCTAATTAAAGGTGGTACGTAGAGACTGGAGGTCCATTG
CGATGCATTGGGGTGACGTGTTTTCTGGAGAGCGCCTACAATACCTCCTG
GGTTTTTTTAGCAGCAGGTTTTGCTGCGCACCCCGAACCAACGGGCGACT
ATGCCTTTCCTTTTTTTGCTCGTGTCGTTCCTGCTTTTGTGAGACCGAGT
CTGTTCTTGTTTGTTGCTCCGCACGCCTGTTTCGACATCCTGGAACGCCG
GTGCACGGTATGGATATACTGTACCCGCAATGTCGGTATCCATCCCCGCA
GAGCAATCGGTGTGGCGGTTTTCCCTGCAAATCTATCATAGTTTTATCCC
TTCCGTCCAGCCATAGCCTTGCGTTTGTTGGCACGTACACTGCGGACTGC
GGGTGCCCCAACCAAAGGGAAGAGGTGGAGCCCACGGCACCCGCCCAAGG
GACGCGTATCCCTCCGCCGTGCTGCCGCATGCCATTCTCTGGCACCACTC
TGTTTTTCGGTTTGTTGGCGGCTCCTATCTCGGCGCGTCCCGTCCATGAG
ACGTTGTTTAGTGTCCGTCCATGTATATATACTCGGATATAAGCAGCATA
CGTGTAGTTTAATTGCGTAAGACTTGAGAGCATGCCCGATTTCGTATGCC
TTCTTTTCCATGGGCACGCGCGCTTTGTGCAAGTGTCGATCGACAGGAGG
ACGATCTACAGGAGGACACTTGCTGAAGAGCATGCCCGATTTCGTGTGTC
TTGTTTGTGTATGCTTTGTGCAGGTCTCTAGCTACAAGGAGGACAGCGAC
AAGGCCATGAAAGAGCTCCTCAACCTCATCTTTCTCGCCTGCGGAGCCCC
CTCGACGGAGGGTCCCTACGGGCCGCCCTCGGTAATTGAGTTGTTTCTTT
GTGGTATGTCTTGGGGTTATTGCTGCAGTTGGTAGCACGCGAAACCGTAT
ATAGCTCAGTTTTTTTCGTCCCAAACAACCCTCCTTCTTTGTTTCCTTCT
TCTCTGGGTGTCCTTTTTGCTGGGGCTATTCCCATGGCAGAACGTGTCCG
TGATAGAGATGGACGGAGAGCAGTGGGTGGAGCTGCTGAAGGTGGTGGTA
GAGGACATGCAGGGGCAGCCCGGAACGAAAGGGGTGCCCTCCTTCCCGCT
GGCTCCCGCCGCAAAGGGGAAGTCCGGAAAGGTTGGTTTGTTACTACGGT
GTGGGGTTTGCAATTTTAGTTTTTTGGTAGTGACGGGGGGGGTTATTTTT
CGCCCGAGCCACCGCCGGTGCTGCAGGCTGCTCAACTTGACGAAAACCAT
ACCATCTACAATAGCCGGAAAAATCTCGTTTCCACCCAGCCTCCACCTGT
GTTTTGCCGCTGAGACCACGTCGCCAAGCCCTTTGTCACCGCTGGTACTC
CTTCAAAAGACCGCGGGTTCCTATTATACGTATGAAACCAGTAGAGGGAC
CTCAAGCACGTCACTTTCCATTCTTCGCGCGCAGATAAAAATGATTTGGT
ATGTGGCACGGTTTTTGCTCTAAACCGGGCAGATGACGTGTCCTTACAAG
TACTGTAGATACAGTTATTGCTTGTGCAAGCCTCGTGTCACAGCTCACGA
CACCAATTCACGCGTCCCATGAGGATCGAAATAGTTGACAACATCGCTCG
ATAATTTGCCAAAAAATGCTCCGTACCATTACGACTTTCGGGTACAATTA
ACAAAATACAGAGTGAGGTTTCACTCGCCTGCAGCGCGGGGTGAGCGTGT
GGGGTTCTCGCCATGTCCTCGGTTAAACCGGAGCAAACGTCAACCTCGGT
GGTGTTTGTGTCCAACCGTGTCCCCCCCCCCCGCAAAAAAAAAAAATACA
GCCGGCGAGGATCTTCCGTTCAAACTACTGCGAGGTTTTCAACAGGCTGG
CGGAGGCGTGCCGGCGCGGGGACGACCACGACGCGAGCACCCTCGAGGCC
GTGGTGGGGATGCTGGTGGCCCTCTCGAGCCATTCGGCTTCGCAGGACAT
TCGTCTTGCCGCCACTCTGGCCGGCATGGAGGTGGGTGATTGTTGTTTTT
CATCATCAAGTGCTGCTGTCGTTTTTTTTTTTTTTGTACAAAAACACAAC
GAATCGTTCTCTATGCACAGGTCGGGCCGGCATGGAGGTACATGTAGGTG
ATTGGTTGGGTGCTTGTGTTGGTCATGGTTTGTGTGTTGCGGTGGAGTCG
AAAAGTGTGTTGCTGTTAACGCGTCCCCTTTGTGCTTGTATTTTTTGTGG
CACTGTATCGTACTTGTATTTTCAACCCCGTCCCCAGCCTAGAGTAGGCT
GCCAAAACCCGGCATATCGCTCCGTCTCGGCGTTGTAAGGATGCGAGACC
AATGGTCTAACTACTACGCCATGCGCTTACATAAGCACAACCTCCCGTCC
CGCTCCGTCTCATCCCGTCCTGTCCCGTCAGATGGGCCTCGGCGTCGCGG
AAGAGCTGGCGGGTCTTCACGAGAAGCTTGGACTCTCCGAGAGACAGCTG
GAGGCGGCCAAGTCGTCCGCCGGCAAGGGGGGGGGCAAGAAAGCCGCGGA
AAAATCCAGGAAAATTCAGGGCCTCGAGAGCCAGGTACAGCTCCATCTCA
CTCCCACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10844:138..3598-

>mRNA_Ecto-sp9_F_contig10844.731.1 ID=mRNA_Ecto-sp9_F_contig10844.731.1|Name=mRNA_Ecto-sp9_F_contig10844.731.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10844:138..3598- (Ectocarpus species9 EcSCA_722f female)
CAGAAGAAGGCGAGAGGACGCAAGTCCACGGGCGGCATCCCCACCTCCCG
AAAGGCTGCGACGACATCAGCAGCAGAAGCAGACGGCGAAGAGAGCGAGG
GAGAAGATGGAAACGCCTTGGGAGGAGCAGTCGGCGGCGGGATGGGGGGG
AGAGGGGCGGAGAACGGCCTCATGGAGGCGGTGCTCCGCAACGACACCGC
CCTCTCATCGGTGGTGTCTGACTGGCAGAAGAAGGCGAGAGGACGCAAGT
CCACGGGCGGCATCCCCACCTCCCGAAAGGCTGCGACGACATCAGCAGCA
GAAGCAGACGGCGAAGAGAGCGAGGGAGAAGATGGAAACGCCTTGGGAGG
AGCAGTCGGCGGCGGGATGGGGGGGAGAGGGGCGGAGAACGGCCTCATGG
AGGCGGTGCTCCGCAACGACACCGCCCTCTCATCGGTGGTGTCTGACTGG
GTCTCTAGCTACAAGGAGGACAGCGACAAGGCCATGAAAGAGCTCCTCAA
CCTCATCTTTCTCGCCTGCGGAGCCCCCTCGACGGAGGGTCCCTACGGGC
CGCCCTCGGTCTCTAGCTACAAGGAGGACAGCGACAAGGCCATGAAAGAG
CTCCTCAACCTCATCTTTCTCGCCTGCGGAGCCCCCTCGACGGAGGGTCC
CTACGGGCCGCCCTCGAACGTGTCCGTGATAGAGATGGACGGAGAGCAGT
GGGTGGAGCTGCTGAAGGTGGTGGTAGAGGACATGCAGGGGCAGCCCGGA
ACGAAAGGGGTGCCCTCCTTCCCGCTGGCTCCCGCCGCAAAGGGGAAGTC
CGGAAAGAACGTGTCCGTGATAGAGATGGACGGAGAGCAGTGGGTGGAGC
TGCTGAAGGTGGTGGTAGAGGACATGCAGGGGCAGCCCGGAACGAAAGGG
GTGCCCTCCTTCCCGCTGGCTCCCGCCGCAAAGGGGAAGTCCGGAAAGCC
GGCGAGGATCTTCCGTTCAAACTACTGCGAGGTTTTCAACAGGCTGGCGG
AGGCGTGCCGGCGCGGGGACGACCACGACGCGAGCACCCTCGAGGCCGTG
GTGGGGATGCTGGTGGCCCTCTCGAGCCATTCGGCTTCGCAGGACATTCG
TCTTGCCGCCACTCTGGCCGGCATGGAGCCGGCGAGGATCTTCCGTTCAA
ACTACTGCGAGGTTTTCAACAGGCTGGCGGAGGCGTGCCGGCGCGGGGAC
GACCACGACGCGAGCACCCTCGAGGCCGTGGTGGGGATGCTGGTGGCCCT
CTCGAGCCATTCGGCTTCGCAGGACATTCGTCTTGCCGCCACTCTGGCCG
GCATGGAGATGGGCCTCGGCGTCGCGGAAGAGCTGGCGGGTCTTCACGAG
AAGCTTGGACTCTCCGAGAGACAGCTGGAGGCGGCCAAGTCGTCCGCCGG
CAAGGGGGGGGGCAAGAAAGCCGCGGAAAAATCCAGGAAAATTCAGGGCC
TCGAGAGCCAGGTACAGCTCCATCTCACTCCCACGTGAATGGGCCTCGGC
GTCGCGGAAGAGCTGGCGGGTCTTCACGAGAAGCTTGGACTCTCCGAGAG
ACAGCTGGAGGCGGCCAAGTCGTCCGCCGGCAAGGGGGGGGGCAAGAAAG
CCGCGGAAAAATCCAGGAAAATTCAGGGCCTCGAGAGCCAGGTACAGCTC
CATCTCACTCCCACGTGA
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