mRNA_Ecto-sp9_F_contig10828.722.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10828.722.1
Unique NamemRNA_Ecto-sp9_F_contig10828.722.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10828.722.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ03_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.970e-46
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  412 QAWGEDIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTMTVMDMGSAHGSTARTAAKEHGCNV 645
            QAWGEDIHIGRYDLLS DELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTMTVMDMGSAHGSTARTAAKEHGCNV
Sbjct:    4 QAWGEDIHIGRYDLLSMDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTMTVMDMGSAHGSTARTAAKEHGCNV 81
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BLAST of mRNA_Ecto-sp9_F_contig10828.722.1 vs.
Match: Probable (glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.330e-44
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:  409 MQAWGEDIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETT-MTVMDMGSAHGSTARTAAKEHGCNV 645
            MQAWGEDIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETT MTVMDMGSAHGSTARTAAKEHGCNV
Sbjct:    1 MQAWGEDIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTIMTVMDMGSAHGSTARTAAKEHGCNV 80
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BLAST of mRNA_Ecto-sp9_F_contig10828.722.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT65_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.430e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  361 SSVQGYYDDPNALNFHMQAWGED-IHIGRYDLLSTDELK-MGPRERIKRATALSTRGLLGKV 540
            S+ +GYYD  +A NF+ Q WGED +H+GRYDLLS DE+K +  +E+I+RA  L    L+ K+
Sbjct:  313 SNAKGYYDSDDAQNFYSQIWGEDELHVGRYDLLSEDEIKGLSDQEQIRRAEELHELELVKKI 374
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BLAST of mRNA_Ecto-sp9_F_contig10828.722.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYW5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.040e-6
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  361 SSVQGYYDDPNALNFHMQAW-GED--IHIGRYDLLSTDELKMGPRER-IKRATALSTRGLLGKVFPPS-PGGETT--MTVMDMGSAHGSTARTAAKE 630
            S+ +GYYD  +A NF+ + W GED   H+GRYDLL+++E  + P E+ I+RA  L    L+ K+     P  ET   + V+D+G  +GS  R   KE
Sbjct:   31 SNAKGYYDSDDAQNFYNKIWAGEDELFHVGRYDLLTSEEKNVFPIEQQIRRAEELHELELMNKIRHYCLPSSETNFGLRVVDLGCGYGSLLRRLYKE 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10828.722.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized5.970e-4698.72protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Probable3.330e-4498.75glycine-sarcosine methyltransferase n=1 Tax=Ectoca... [more]
Uncharacterized3.430e-850.00protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
S-adenosyl-L-methionine-dependent3.040e-640.21methyltransferase n=1 Tax=Fragilariopsis cylindrus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10828contigEcto-sp9_F_contig10828:520..4058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue1.4e-36
Seed eggNOG ortholog2880.D8LE22
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-05_004340.1
Exons3
Model size645
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10828.722.1prot_Ecto-sp9_F_contig10828.722.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10828 520..4058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928304.1803977-CDS-Ecto-sp9_F_contig10828:519..7501622928304.1803977-CDS-Ecto-sp9_F_contig10828:519..750Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 520..750 -
1692277828.17436-CDS-Ecto-sp9_F_contig10828:519..7501692277828.17436-CDS-Ecto-sp9_F_contig10828:519..750Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 520..750 -
1622928304.200073-CDS-Ecto-sp9_F_contig10828:1470..15961622928304.200073-CDS-Ecto-sp9_F_contig10828:1470..1596Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 1471..1596 -
1692277828.183142-CDS-Ecto-sp9_F_contig10828:1470..15961692277828.183142-CDS-Ecto-sp9_F_contig10828:1470..1596Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 1471..1596 -
1622928304.7910714-CDS-Ecto-sp9_F_contig10828:3770..40581622928304.7910714-CDS-Ecto-sp9_F_contig10828:3770..4058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 3771..4058 -
1692277828.1906297-CDS-Ecto-sp9_F_contig10828:3770..40581692277828.1906297-CDS-Ecto-sp9_F_contig10828:3770..4058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10828 3771..4058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10828.722.1

>prot_Ecto-sp9_F_contig10828.722.1 ID=prot_Ecto-sp9_F_contig10828.722.1|Name=mRNA_Ecto-sp9_F_contig10828.722.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=215bp
MRAHVAKCIKMAHRRSALDASRFALGGSGRLWSLQRLQRKSTDLRQRYPT
SAFAATTGTSQGSVMSRSGRVEYPPRGRSHMVASAVSSGGMAFFPKCLQS
SNTGCKAFSAAAGDSVEDIVSSVQGYYDDPNALNFHMQAWGEDIHIGRYD
LLSTDELKMGPRERIKRATALSTRGLLGKVFPPSPGGETTMTVMDMGSAH
GSTARTAAKEHGCNV
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mRNA from alignment at Ecto-sp9_F_contig10828:520..4058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10828.722.1 ID=mRNA_Ecto-sp9_F_contig10828.722.1|Name=mRNA_Ecto-sp9_F_contig10828.722.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3539bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10828:520..4058- (Ectocarpus species9 EcSCA_722f female)
ATGCGGGCTCACGTAGCCAAGTGTATCAAGATGGCGCACCGTCGCTCCGC
GCTTGACGCCTCACGGTTCGCGCTCGGTGGATCCGGAAGATTATGGTCAC
TCCAACGCCTCCAGCGAAAAAGCACCGACCTTCGGCAGCGTTACCCTACG
TCCGCGTTCGCGGCGACTACGGGGACCTCTCAAGGTTCCGTGATGTCAAG
GAGCGGCCGCGTTGAATACCCGCCACGGGGCAGGTCTCACATGGTAGCTT
CGGCTGTAAGCAGCGGCGGCATGGCCTTCTTTCCGAAGGTGGGTGAGAGG
AAGATCCAGAAACAAACATGATTGATCATGATTTCGCTGGCACATCTACT
GCTGTACTCCGTTGCGCCTACGACGGCCCCTAGACGAAGCACGGTCCTCT
ATGCTCTGTGCCGACTATGTTCCAGGAGGAAAACTTCTACGATTCGCGGT
AAAAACGATGTAGTAGGCTCTGCAGTACATAAATTGAACTCAAAGGGGAT
CTTTAATCAATCGGTCAATAAATCAATCGCTCAAGAAATTATGCCGAAAA
TTGTATCATGAGTTGCGAGGCAAGCTGATTTATTTGTGGACACGAGTACA
CCGCAGCAGTAGTTGGGTGTTGTTTTCCTACGAGAAATACTCCCAGAGAC
ACACAAACAATGGGGAACTAGGGGCAGATACATAGGCCATCCTACATGTA
GATAAAGAAAGGTGAACATATGGGAGACACAGACAGACGTCCCTTATTTA
CTCTGCACACCCCAGGAAGCCACGAGAAAAAAAAAAAAGCGCCGAGTCGA
CACAACCCCCCCTCGCGCTACTTCGTTTGTGCCCTCTGGCACCCCAGTGT
TTATTTGCTTGCTCTGCGTGCTTATATCACTGCCGCACCTGGGCTTCAAG
TGCTGCAGCCGAGGTGGCGAGAAATCGGGTGCGAGAAAGTGGTATGCATA
GTGAATCGGACAGCCAGAGCCAAAAAAGGTATAGACGCCGATTTTTTTAC
TACATACACATCACTGCCGATGTACTGAAGTATCATATGTTATAAGAAAC
AGAGGGAATTTGGAAAGTGGCATTCGTTCTGGACGAGCAACTCTGTGTGG
CATGTGGCACCCCAAAAGAAACACCCCAAAAGAAAACAACCCAAGAGCAG
AGATTGAAACGGTTCTTTGTGAAGACAGTGTCACCAACAACAACATCAAC
AACTTCTTTATTGAAAAGCATCGACCACTTGTACTTCTTAGCTGCTGTAT
CAACCCCAAGAGATTGAACCCCCAACTAAAAATGACGTCTTGTTTCCCGG
CCACACGTGTTTTGTACCGAAGGCACGAAAAATTCCGTGTGTCATACACT
ACGACATTGCGGCGCTACTTCTTTCAAATGCACCCGTCACTGTAGTATGC
GATAGAGACAGGGTCGGGTATACGAAAGGTAGTTGCGTTGTAGTCTGGAA
ATTATACGGTAGGTTGCCCGAAAATCATATTTCAATCGAGTATGCATATC
CTAATAATATCGTTTTCGTAATCGGTTTGCTTGCGGGGTTTAGAGCGAAT
CGCTATAAAACCCGAGCACCAGCCGTCCACGTAGAACCTACCCTCGAAGA
GGTGTTCTACACCCGGAGATCCTCCCACATTTGACGGCGTAAAACTGCAG
TCCGTGTCCGGCCAATAGTCCGTATCGAGTGAAGTCTGCGGCGCATGATG
AACAATTCCATGGCTGAAACGCAAAATAATACCGTGATGTATTGCTGGTG
GTGGTGGTTTGGGCCAGGTTTGGGGGCGTTTTGGCCCATGTCTCGAAAGG
AGTATACTCACTGGAAAGACTAAGGAATGCAATAAAGGAGTGCCCCCAAC
CTCAGCCCCCCCGGCAGACTACGGAAGCCATTTCTTTCCTCGGCTTTTTA
TTCCAACATCAAACAATATCGCGCACCCTCTAAGCAGTGTTACGATTGTA
ACAGAGAACCGGTCGTGCTTCATTGATCCATGGAATAGCAGGGAAATGTG
TTGTCTGTACGTGGCGTCGGACAGGATATTTAGAATCAAGTACAACGCCG
GAAACGGTTCGCAACCATCAAGCCTTTCATTTGAGACGTTGACCAATCGA
TGCGGTCGGTACGGTTCCCAAACACTACTGCGAAACGCCCAACGCCCCAG
AGATACTCTGTGAAGCGAGGTCGTGAAAACGAGACGCATTATCGCTCTCA
ATACTTTTCATAAAAGAGTTCTTATGTCTCGGTCGTGTTTTCTACAGGGC
TAGGTTGTGTCATCTGTCCGCTTCCCGTGTGTTCTCCGGTCGTTGTTGTT
GCTGCTGCTGCTTTTTCTGCTGCCTTTTCTGCTGCCTTTTCTGCTGCTGC
TGCTGCTGCTGCTGGTAATGCCACCAATGCCGCTAGTGCTGCTAATGCTG
CAGTGTCGCATTCGTGCCTAGACAGCACAACATCATTTTCACCCGCTCTC
CCTGCCCTCCAGTGCCTTCAAAGCAGCAACACTGGATGCAAAGCCTTCTC
GGCGGCTGCTGGAGATTCAGTGGAAGACATCGTTTCCTCCGTTCAAGGCT
ACTACGACGACCCGAACGCCCTCAATTTTCACATGCAGGTTTGTATATGA
TGGGTCTTCGCGCTGGTGTTCCCCGCACTCTTGTACTTTCCTATAGTGCT
TCTAGCTTCGGTAAATATCAAGGGTCACCTTGCTTGTGGACCTTAGCCCC
TTGCCCACCGTTTCTTGTAGCAAGGACGCAGACAACAGGGCCCTCTTCGC
GGGGCCGTCATTCTACCTATACCAGGGGAACATTATTTGCGACAACAATA
CTGCCCTCCCTGACGATGAATCAATTCGGAGGTAGGGGCGTTTATGTCTT
GCATGCCTTAGTTGCTAGACCCTTGACCACGCGTCCTCGATACCTCACAC
GACCGATCACACGCGGGGGCAGGGGATAGTAGACCCTGGGTGTGAGAATC
TTCGACCACTGTTTTTCTCCCTTTTTGTCTGAGTGCACGCGACGAATATC
CATGTTGCTGACCTCAAATCATGCTTGCGCAACGTGGGGATGAACCCGCA
CAAAGACTGATACCACACGTGCTCGCGTTTTGTCGTTTACCGACCGACTA
CAATCCTGGCATATCGTCCGTTTAGCGTACAATCGCTGAGGCGTAATTCC
GTTGTTGTCGTACCCCTGGCGAATCTATTTGGATGCTTCTCCTCTAGAAT
TGTAGTCATGTTGCGACACACCGTAAGACGAGGGGAACGTTTACGCGAAA
TGGTTTTTCCTTTTCGACGGCGGGGGGGGGGGGGGGGTATCTGGGCACGC
CACAACAGGCATGGGGAGAGGACATCCACATCGGGAGGTACGACCTCCTG
AGCACGGATGAGCTGAAGATGGGGCCGCGAGAGCGCATCAAGCGGGCCAC
CGCGCTGTCGACCCGGGGGCTACTCGGCAAGGTCTTTCCACCGTCGCCAG
GCGGGGAGACCACTATGACGGTCATGGACATGGGCTCCGCGCACGGCAGC
ACGGCGAGGACGGCGGCCAAGGAGCACGGGTGCAACGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10828:520..4058-

>mRNA_Ecto-sp9_F_contig10828.722.1 ID=mRNA_Ecto-sp9_F_contig10828.722.1|Name=mRNA_Ecto-sp9_F_contig10828.722.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10828:520..4058- (Ectocarpus species9 EcSCA_722f female)
ATGCGGGCTCACGTAGCCAAGTGTATCAAGATGGCGCACCGTCGCTCCGC
GCTTGACGCCTCACGGTTCGCGCTCGGTGGATCCGGAAGATTATGGTCAC
TCCAACGCCTCCAGCGAAAAAGCACCGACCTTCGGCAGCGTTACCCTACG
TCCGCGTTCGCGGCGACTACGGGGACCTCTCAAGGTTCCGTGATGTCAAG
GAGCGGCCGCGTTGAATACCCGCCACGGGGCAGGTCTCACATGGTAGCTT
CGGCTGTAAGCAGCGGCGGCATGGCCTTCTTTCCGAAGATGCGGGCTCAC
GTAGCCAAGTGTATCAAGATGGCGCACCGTCGCTCCGCGCTTGACGCCTC
ACGGTTCGCGCTCGGTGGATCCGGAAGATTATGGTCACTCCAACGCCTCC
AGCGAAAAAGCACCGACCTTCGGCAGCGTTACCCTACGTCCGCGTTCGCG
GCGACTACGGGGACCTCTCAAGGTTCCGTGATGTCAAGGAGCGGCCGCGT
TGAATACCCGCCACGGGGCAGGTCTCACATGGTAGCTTCGGCTGTAAGCA
GCGGCGGCATGGCCTTCTTTCCGAAGTGCCTTCAAAGCAGCAACACTGGA
TGCAAAGCCTTCTCGGCGGCTGCTGGAGATTCAGTGGAAGACATCGTTTC
CTCCGTTCAAGGCTACTACGACGACCCGAACGCCCTCAATTTTCACATGC
AGTGCCTTCAAAGCAGCAACACTGGATGCAAAGCCTTCTCGGCGGCTGCT
GGAGATTCAGTGGAAGACATCGTTTCCTCCGTTCAAGGCTACTACGACGA
CCCGAACGCCCTCAATTTTCACATGCAGGCATGGGGAGAGGACATCCACA
TCGGGAGGTACGACCTCCTGAGCACGGATGAGCTGAAGATGGGGCCGCGA
GAGCGCATCAAGCGGGCCACCGCGCTGTCGACCCGGGGGCTACTCGGCAA
GGTCTTTCCACCGTCGCCAGGCGGGGAGACCACTATGACGGTCATGGACA
TGGGCTCCGCGCACGGCAGCACGGCGAGGACGGCGGCCAAGGAGCACGGG
TGCAACGTAGCATGGGGAGAGGACATCCACATCGGGAGGTACGACCTCCT
GAGCACGGATGAGCTGAAGATGGGGCCGCGAGAGCGCATCAAGCGGGCCA
CCGCGCTGTCGACCCGGGGGCTACTCGGCAAGGTCTTTCCACCGTCGCCA
GGCGGGGAGACCACTATGACGGTCATGGACATGGGCTCCGCGCACGGCAG
CACGGCGAGGACGGCGGCCAAGGAGCACGGGTGCAACGTA
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