mRNA_Ecto-sp9_F_contig1082.719.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE) HSP 1 Score: 398 bits (1023), Expect = 2.820e-139 Identity = 196/241 (81.33%), Postives = 209/241 (86.72%), Query Frame = 1
Query: 1 MHCRSLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQ------------------VIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELASS 669
MHC SLRRSITTG PCMTQDGG+ESTVHVDVEDHKVD HPIRIFDCAGQ ++YYGLLQLFLTPRAVYLLVWDAAKASEM GL+LEDLAIAPWLRYLTFRVPDANV+LVGNKWDRVVRAR TVADDVERESR++LKSW+EKAHGHQPH LSLE+GVSLV+CA S LGV AP FG TGWPCDKSTPGLFHRMI++PVDDKRTVTMHLPPSY +ALEMLEELASS
Sbjct: 1 MHCLSLRRSITTGKPCMTQDGGLESTVHVDVEDHKVDGHPIRIFDCAGQSYAPLDVSVIPHVDHCRQIVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPDANVILVGNKWDRVVRARCTVADDVERESRRFLKSWMEKAHGHQPHRLSLENGVSLVTCAQ-SDLGVSAPAFGGGTGWPCDKSTPGLFHRMIYNPVDDKRTVTMHLPPSYHVALEMLEELASS 240
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 5.930e-135 Identity = 201/219 (91.78%), Postives = 208/219 (94.98%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELASS 669
SLRRSITTGGPCMTQ+GGVESTVHVDVEDHKVD HPIRIFDCAGQV+YYGLLQLFLTPRAVYLLVWDAAKASEM GL+LEDLAIAPWLRYLTFRVPDANV+LVGNKWDRVVR R TVADDVE ESR+WLKSW+EKAHGHQPHGLSLEDGVSLVSCA SGLGV AP FG TGWPCDKSTPGLFHRMI+DPVDDKRTVTMHLPPSYRLALEMLEELASS
Sbjct: 556 SLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPDANVILVGNKWDRVVRTRGTVADDVECESRRWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQ-SGLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASS 773
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 1.250e-133 Identity = 199/219 (90.87%), Postives = 207/219 (94.52%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELASS 669
SLRRSITTGGPCMTQ+GGVESTVHVDVEDHKVD HPIRIFDCAGQV+YYGLLQLFLTPRAVYLLVWDAAKASEM GL+LEDLAIAPWLRYLTFRVP+ANV+LVGNKWDRVVR R TVADDVE ESR+WLKSW+EKAHGHQPHGLSLEDGVSLVSCA S LGV AP FG TGWPCDKSTPGLFHRMI+DPVDDKRTVTMHLPPSYRLALEMLEELASS
Sbjct: 463 SLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPNANVILVGNKWDRVVRTRGTVADDVECESRRWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQ-SCLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASS 680
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 360 bits (924), Expect = 2.570e-114 Identity = 177/219 (80.82%), Postives = 193/219 (88.13%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRT-VADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELAS 666
SLRRSI TG PCMT+ GG ESTVHVDVEDH +D HPIR+FDCAGQV+YYGLLQLFLTPRAVYLLVWDAAKASEM GL+LEDLAIAPWLR+LTFRVPDA+V+LVGNK DRVVR RRT VA DVE ESRQWL+SW+E A GHQP G+SLEDGVSLVSCA SG+G AP+FG R+GWPCDKSTPGLFHR+I+D DD R VTM LP SYRLALEMLEELAS
Sbjct: 391 SLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGHPIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLAIAPWLRHLTFRVPDASVILVGNKCDRVVRTRRTAVAVDVEHESRQWLESWIEIARGHQPRGISLEDGVSLVSCAA-SGVGAVAPSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEMLEELAS 608
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE) HSP 1 Score: 329 bits (844), Expect = 1.970e-105 Identity = 163/217 (75.12%), Postives = 184/217 (84.79%), Query Frame = 1
Query: 19 RRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTV-ADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELAS 666
+ SI TG PCMT+ GVESTVHVDVEDH+VD HPIR+FDCAGQV+YYGLLQLFLTPRAVY+LVWDAAKASEM GL+LEDL IAPWLRYLTFRVPDA+V+LVGNK D VVR RRTV A DVE ESRQWL+S +E A GHQP G+SLEDGVSLVSCA SG+GV AP+FG +GWP DK+TPGL+ R+ ++ R VTMHLP SYRLAL+MLEELAS
Sbjct: 103 KTSIKTGRPCMTRGCGVESTVHVDVEDHEVDGHPIRVFDCAGQVVYYGLLQLFLTPRAVYMLVWDAAKASEMEGLNLEDLGIAPWLRYLTFRVPDASVILVGNKCDHVVRTRRTVVAADVEHESRQWLESLIEIARGHQPRGISLEDGVSLVSCAA-SGVGVVAPSFGAGSGWPFDKNTPGLYRRIAYNSASRTRAVTMHLPESYRLALKMLEELAS 318
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE) HSP 1 Score: 313 bits (801), Expect = 2.500e-98 Identity = 159/228 (69.74%), Postives = 176/228 (77.19%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDC-------HPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPG---LFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELAS 666
SLR SI G PCMT+ GGV+STVHVDV+DH +D HPIRIFDCAGQ YYGLLQLFLTPRAVYLLVWDA KAS+M L+LEDLAIAPWLR +TFRVPDANVVLVGNKWD V A VADDVER+SR+WL +W+E AH HQP LSLE GVSLVSCAP SG AP+FG R WPCDK+ PG LF R+I++PVDD R VTM L P Y LAL +LEELAS
Sbjct: 83 SLRCSIKAGKPCMTRGGGVDSTVHVDVQDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAPWLRQMTFRVPDANVVLVGNKWDLVAEANLHVADDVERKSREWLTAWIESAHRHQPPQLSLEAGVSLVSCAP-SGRAGWAPSFGGRKAWPCDKNKPGQPGLFRRIIYNPVDDMRAVTMRLSPVYVLALNLLEELAS 309
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: G (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.170e-87 Identity = 161/305 (52.79%), Postives = 177/305 (58.03%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQ--------------------------------------------------------------------------------------VIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELASS 669
SLRRSITTG PCMT+D GVESTVHV+VEDHKVD PIRIFDCAGQ V+YYGLLQ FLTPRAVYLLVWD AKASEM GL+LEDLAIAP LR LTFRVPDAN+VLVGNK DRV +ARRTVADD+E ESRQWL +LVSC+P SGLG+ AP+FG RT WPC KSTP LFHR+I +PVDDKR VTMH+PP Y++ALEMLEELASS
Sbjct: 50 SLRRSITTGKPCMTRDSGVESTVHVNVEDHKVDGRPIRIFDCAGQAVKTWLSVEDDPEVLEEEIAMELQAVDEQLAGVTLDDDVPSEEEDDDGMYPVILHPVAQFTLFDTMFQSSAPLQVSVLPHVDHCRQVVYYGLLQQFLTPRAVYLLVWDTAKASEMNGLNLEDLAIAPRLRCLTFRVPDANMVLVGNKLDRVAKARRTVADDLESESRQWL---------------------NLVSCSP-SGLGILAPSFGARTDWPCGKSTPELFHRIIFNPVDDKRAVTMHIPPGYQVALEMLEELASS 332
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.010e-51 Identity = 96/160 (60.00%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 19 RRSITTGGPCMTQDGGVESTVHVDVEDHKVDC-------HPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWD---------RVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSL 450
+ SI G PCMT+ GGV+STVHVDVEDH +D HPIRIFDCAGQ YYGLLQLFLTPRAVYLLVWDA KAS+M L+LEDLAIAPWLR +TFRVPDANVVLVGNKWD RV++A D E Q K + + A G +L
Sbjct: 247 KTSIKAGKPCMTRGGGVDSTVHVDVEDHNLDVQDHKAGGHPIRIFDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAPWLRQMTFRVPDANVVLVGNKWDXPRHEDKSMRVLKANVVEYSDTEFSDAQLRKQFADNAKRMARQGRAL 406
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI) HSP 1 Score: 168 bits (426), Expect = 2.040e-44 Identity = 106/231 (45.89%), Postives = 130/231 (56.28%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWD----AAKASEMAGLHLEDLAIAPWLRYLTFRVPDANVVLVGNKWDRV-------VRARRT-VADDVERESRQWLKSWL-EKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTGWPCDKSTPGLFHRMIHDPVDDK-RTVTMHLPPSYRLALEMLEELA 663
SLR+SI G T++ G ESTVH+DVEDH++D PIRIFDCAGQV Y GLLQLFLTP+ ++LLV D LEDL W+R L+FRVP A V+LVG K DRV AR + A VE R W+ W ++ H H ++ E+GVSLV+C GL P GWPCD S P L HR+ D K R V LP S+ AL +L+E A
Sbjct: 382 SLRQSIVAGKARPTRNHGGESTVHIDVEDHELDGRPIRIFDCAGQVAYTGLLQLFLTPQVIHLLVVDMPSVVGNIENGTSNPLEDLGALRWVRSLSFRVPGAAVILVGTKCDRVKDTDGETTEARLSRAAGMVEDNIRSWIHKWTTQRLHNHHAQSIAFENGVSLVNC----GL----PCDELDGGWPCDVSQPSLLHRITFK--DGKARGVDADLPLSWGCALSLLDETA 602
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 150 bits (379), Expect = 4.190e-38 Identity = 93/243 (38.27%), Postives = 131/243 (53.91%), Query Frame = 1
Query: 13 SLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVIYYGLLQLFLTPRAVYLLVWDAAKASEMAG--LH----------LEDLAIAPWLRYLTFRVPDANVVLVGNKWDRVVRARRTVADDVERESRQWLKSWLEKAHGHQPHGLSLEDGVSLVSCAPPSGLGVRAPTFGWRTG------WPCD-------KSTPGLFHRMIHDPVDDKRTVTMHLPPSYRLALEMLEELAS 666
SLR+S+ TG P T G ESTV +DVE V+ +R++DCAGQV Y GLLQ+FL+PRAV LLV D + G +H L++L + WLR L+FR+PD++VV+V K D A +E +WL+SW G + + +EDGVSL SC PP+ G R W CD +S P L HR++++ + R ++ LP S+ +ALE+L+ L S
Sbjct: 299 SLRQSLRTGRPTPTS-GSEESTVQIDVEQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLAAGMGTDAAGRIEGAIGEWLESWS----GAGMNAVHVEDGVSLTSCFPPTPNEDGGAALGKRKSPDEDSTWACDWREGVSVESQPSLLHRVMYNSKGNVRGASLVLPRSWNIALEVLDALGS 536 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1082.719.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1082.719.1 >prot_Ecto-sp9_F_contig1082.719.1 ID=prot_Ecto-sp9_F_contig1082.719.1|Name=mRNA_Ecto-sp9_F_contig1082.719.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=223bp MHCRSLRRSITTGGPCMTQDGGVESTVHVDVEDHKVDCHPIRIFDCAGQVback to top mRNA from alignment at Ecto-sp9_F_contig1082:24960..26171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1082.719.1 ID=mRNA_Ecto-sp9_F_contig1082.719.1|Name=mRNA_Ecto-sp9_F_contig1082.719.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1082:24960..26171- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1082:24960..26171- >mRNA_Ecto-sp9_F_contig1082.719.1 ID=mRNA_Ecto-sp9_F_contig1082.719.1|Name=mRNA_Ecto-sp9_F_contig1082.719.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1338bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1082:24960..26171- (Ectocarpus species9 EcSCA_722f female)back to top |