mRNA_Ecto-sp9_F_contig1080.708.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 382 bits (980), Expect = 2.690e-122 Identity = 194/203 (95.57%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 10 LKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVGGFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLMVK 618
LKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEV+GGFYALMALWRSVEDLSGDNQLEASTYGAT+KPSEESEASEDVAYLTWAVGRLFELQGK AEAE LYD+CQA+ E+ALGPEHPSVATTLH RAGLMVK
Sbjct: 493 LKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVMGGFYALMALWRSVEDLSGDNQLEASTYGATVKPSEESEASEDVAYLTWAVGRLFELQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLMVK 695
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 179 bits (454), Expect = 9.110e-50 Identity = 110/232 (47.41%), Postives = 140/232 (60.34%), Query Frame = 1
Query: 1 FRELKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLK-ERVRLVTCRQAQYLGRMSVVKDYAKAGEVVGGFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQ-----------------------------GKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAG 606
F L A+ RFR+LGVLA GA AP++M+++LW+ +S L + LVDKSLV+ EH Y LHDLVL F K +L LK ERV LVT R AQYL R+SV+++YA+A E+ GG +ALM LW SVE+LS DN L+ + YG + E EA+ D A AVG LF LQ GK A+AE L ++ A+ EK LGPEHP VA +L+NRAG
Sbjct: 209 FSALDADAKERFRRLGVLAGGALAPMEMLSYLWDQGPGNSLLFVGQLVDKSLVQAVEHKYRLHDLVLAFVKSKLCCLKMERVVLVTSRLAQYLSRLSVLQEYAEADEMQGGLFALMGLWGSVEELSRDNTLQTTMYGKILSELEACEATADTAISYGAVGNLFFLQVRATRNFLLVSSVSSSRAVPSQTPLLAVRGKYADAEPLCERSPAIREKVLGPEHPDVAQSLNNRAG 440
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 158 bits (400), Expect = 4.160e-42 Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 1
Query: 40 KLGVLAKGARAPVDMVAHLWELDHDDSTLL-LDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVG--GFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRA 603
K+ VLA GA AP++M+ +LWE++ + T + LV K L++ V Y +HDLVL+F K +R +E V T QAQYLGR+ V+K Y G G + L ALWRSVE LSGD +LE ++Y A++ E EA+EDVA VG LF +QGK EAE LY + QA+ EK LGPEHP VAT+L+NRA
Sbjct: 279 KMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 160 bits (406), Expect = 5.810e-42 Identity = 96/199 (48.24%), Postives = 128/199 (64.32%), Query Frame = 1
Query: 34 FRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDD---LVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVGG--FYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLM 612
F K+ VLA GA AP++M+ +LWE++ + T DD LV K L+ V Y +HDLVL+FAK +R +E V+ T QAQYLGR+ V++ Y GG + L ALWRSVE LSGD +LE ++Y ++ E EA++ VA W+VG LF +QGK AEAE LY++ A+ EK LGPEHP VAT+L NRA L+
Sbjct: 536 FLKMAVLAAGALAPIEMLRNLWEVEDAEGTR--DDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 157 bits (397), Expect = 9.850e-41 Identity = 91/197 (46.19%), Postives = 129/197 (65.48%), Query Frame = 1
Query: 34 FRKLGVLAKGARAPVDMVAHLWELDHDDSTL-LLDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVG--GFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLM 612
F ++ VLA GA AP++M+ +LWE++ + T + LV+K L+ V + Y +HD+VL+FAK +R +E V T QAQ+LGR+ V+K Y G G + L +LWRSVE LSGD +LE +TY A+++ E +A+ED+A AVG LF+ Q K EAE L+++ QAM EK LGPEHP VA +L+NRA L+
Sbjct: 494 FLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLL 690
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.140e-37 Identity = 90/195 (46.15%), Postives = 122/195 (62.56%), Query Frame = 1
Query: 34 FRKLGVLAKGARAPVDMVAHLWELDHDDSTLL-LDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVG--GFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAG 606
F + VLA GA AP++M+++LWE++ + T + LV K L+ V Y +HDLVLDFAK +R +E V+ T QAQYLGR+ VV+ Y G G + L ALWRSVE LSGD QLE ++Y A++ E EA+E A ++VG LF +QGK +AE+LY + A EK LG EHP VA +L++ AG
Sbjct: 320 FLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQGKYDDAESLYKRSLATQEKVLGQEHPDVAQSLNDLAG 514
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.040e-35 Identity = 88/190 (46.32%), Postives = 116/190 (61.05%), Query Frame = 1
Query: 64 ARAPVDMVAHLWELDHDDSTL-LLDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVGG--FYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLMVKQ 621
A AP++M+ +LWE++ + T + LV K L+ V Y +HDLVL++AK +R E VR VT QA +LGR+ V+K Y G + L ALWRSVE LSGD +LE + E EA+E VA W+VG LF +QGK AEAE LY++ QA+ E LGPEHP V T+L+NRA L+ KQ
Sbjct: 521 ALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVAL--------ESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 133 bits (334), Expect = 2.590e-32 Identity = 83/204 (40.69%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 1 FRELKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLL-LDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYA--KAGEVVGGFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNR 600
F L R F ++ VLA GA AP +M+ +LWE+ + T + LV+K L++ V+ Y +HDL+L + + ++++ ERV+ T QAQYLGR+ VV Y K G G + L LWR +E LSGD LE ++Y A + + EA+ +VA V L+++QGK AEAE LY++ Q + EK LG EH VA L+NR
Sbjct: 502 FNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCLEWVALLYDIQGKFAEAEPLYERSQTILEKVLGSEHSDVAKALNNR 705
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI) HSP 1 Score: 126 bits (317), Expect = 5.050e-30 Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 43 LGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVGGFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWA-VGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLMVKQ 621
L VLA G AP DM+ LW+ + LVD+S+++ A+ +HDLVL F K +L+ R + T R A+YLG++ V++ Y GE G YALMALWRSVEDL G++++ A+ Y ++ E + W GR+ EL GK AEA+ LY + + E LGP+HP++AT L+NRAGL+ Q
Sbjct: 471 LAVLAPGTLAPSDMLEDLWDEAPGATKTFAAQLVDQSMLQPAGDAFRVHDLVLLFLKPKLKADPNRP-IATSRFAEYLGQLKVLRRYLGDGETSDGVYALMALWRSVEDLVGESRV-AAVYMNNLQGVPE--------HAPWRQAGRVLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.360e-25 Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 34 FRKLGVLAKGARAPVDMVAHLWELDHDDSTLL-LDDLVDKSLVK-VEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVVG--GFYALMALWRSVEDLSGDNQLEASTYGATMKPSEESEASEDVAYLTWAVGRLFELQGKLAEAEALYDQCQAMYEKALGPEHPSVATTLHNRAGLMVKQ 621
F+K VLA GA A +M+ +LWE + T + LV K L++ V Y +HDLVLDF K +++ E + + QAQ+LGR++V+K Y G G + L ALWRSVE LSGD +LE +Y ++ E EA+ VA +VG LF +Q A+ E+ LGPEH VA +L NRA L+ Q
Sbjct: 413 FKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFSIQ--------------AIQEQILGPEHLDVAMSLINRAQLLRAQ 598 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1080.708.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1080.708.1 >prot_Ecto-sp9_F_contig1080.708.1 ID=prot_Ecto-sp9_F_contig1080.708.1|Name=mRNA_Ecto-sp9_F_contig1080.708.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=207bp FRELKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKback to top mRNA from alignment at Ecto-sp9_F_contig1080:18568..19587+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1080.708.1 ID=mRNA_Ecto-sp9_F_contig1080.708.1|Name=mRNA_Ecto-sp9_F_contig1080.708.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:18568..19587+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1080:18568..19587+ >mRNA_Ecto-sp9_F_contig1080.708.1 ID=mRNA_Ecto-sp9_F_contig1080.708.1|Name=mRNA_Ecto-sp9_F_contig1080.708.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:18568..19587+ (Ectocarpus species9 EcSCA_722f female)back to top |