mRNA_Ecto-sp9_F_contig108.703.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig108.703.1
Unique NamemRNA_Ecto-sp9_F_contig108.703.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig108.703.1 vs.
Match: FirrV-1-A29 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC)

HSP 1 Score: 94.7 bits (234), Expect = 8.200e-23
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:   25 FAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAEVSSIKAIPRYQRHDNLVVYVCRVNSSGRFMNSRPCINCLTFMKANHVTRVFFTDGSG-FTKINL 342
            F  C+ L   SQH  F HGA+   R    ++GKGSNR + HAEVS+++ +   Q H  L VYVCRVN+ G+FMNS+PC NC+ +MK   V RV+++D +G F+K+ L
Sbjct:    9 FLECQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNVQGGQ-HMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.703.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
FirrV-1-A298.200e-2347.66n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig108contigEcto-sp9_F_contig108:40127..40471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.777053-CDS-Ecto-sp9_F_contig108:40126..404711622928300.777053-CDS-Ecto-sp9_F_contig108:40126..40471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 40127..40471 +
1692277827.0292225-CDS-Ecto-sp9_F_contig108:40126..404711692277827.0292225-CDS-Ecto-sp9_F_contig108:40126..40471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 40127..40471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig108.703.1prot_Ecto-sp9_F_contig108.703.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig108 40127..40471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig108.703.1

>prot_Ecto-sp9_F_contig108.703.1 ID=prot_Ecto-sp9_F_contig108.703.1|Name=mRNA_Ecto-sp9_F_contig108.703.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MKRQHTDYFAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHA
EVSSIKAIPRYQRHDNLVVYVCRVNSSGRFMNSRPCINCLTFMKANHVTR
VFFTDGSGFTKINL*
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mRNA from alignment at Ecto-sp9_F_contig108:40127..40471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig108.703.1 ID=mRNA_Ecto-sp9_F_contig108.703.1|Name=mRNA_Ecto-sp9_F_contig108.703.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=345bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:40127..40471+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGAGGCAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGTCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATCCCACGGTACCAGCGCCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCCC
GACCATGCATAAATTGTTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGGTCAGGCTTCACCAAAATAAACCTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:40127..40471+

>mRNA_Ecto-sp9_F_contig108.703.1 ID=mRNA_Ecto-sp9_F_contig108.703.1|Name=mRNA_Ecto-sp9_F_contig108.703.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:40127..40471+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGAGGCAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTC
GAGGTCTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAA
GAGGTCACCGCGTGCTGGGAAAAGGCAGCAATCGTCACAATGCGCATGCT
GAAGTCAGCTCAATCAAGGCCATCCCACGGTACCAGCGCCACGACAACTT
GGTCGTGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCCC
GACCATGCATAAATTGTTTAACTTTTATGAAGGCCAACCACGTCACAAGA
GTCTTCTTCACAGACGGGTCAGGCTTCACCAAAATAAACCTTTAAATGAA
GAGGCAACACACGGATTACTTCGCGATGTGCAGGGATCTCTGTTCGAGGT
CTCAGCACTCGAGATTCCACCACGGCGCGGTGACAGTGCTCAGAAGAGGT
CACCGCGTGCTGGGAAAAGGCAGCAATCGTCACAATGCGCATGCTGAAGT
CAGCTCAATCAAGGCCATCCCACGGTACCAGCGCCACGACAACTTGGTCG
TGTACGTCTGTAGAGTGAACTCTTCCGGCAGATTCATGAACTCCCGACCA
TGCATAAATTGTTTAACTTTTATGAAGGCCAACCACGTCACAAGAGTCTT
CTTCACAGACGGGTCAGGCTTCACCAAAATAAACCTTTAA
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