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Homology
BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: Alpha-(1,6)-fucosyltransferase, (family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI) HSP 1 Score: 548 bits (1411), Expect = 1.740e-193 Identity = 287/312 (91.99%), Postives = 291/312 (93.27%), Query Frame = 1
Query: 1 MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSYVRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAATAAA-PAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFPSAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGE-ASMYLCK 930
MLATMADSSHRNEKSRTVRRGGRPRRGG TPRAAL+ASVVLAVLGRCSSYVR AEAEVAEAEDGSKTPALSMELDVGDESRVT ADGSEGGDA PAVLFSSEWA EYARGEEGCDLARGSFMWRG GLGSN+NNMLNAWVYALSVEKWSDMTVVV ENQMK VDCGEESGGEAQTGWDC+FKPMPHLCTFPSAESWKEYMVSKDLPEA+LVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVT G ASMYLCK
Sbjct: 1 MLATMADSSHRNEKSRTVRRGGRPRRGGCTPRAALQASVVLAVLGRCSSYVR---AEAEVAEAEDGSKTPALSMELDVGDESRVTAADGSEGGDAXXXXXXXXXPAVLFSSEWAVEYARGEEGCDLARGSFMWRGQGLGSNINNMLNAWVYALSVEKWSDMTVVVGENQMKWVDCGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCK 309
BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: GT23 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE) HSP 1 Score: 528 bits (1360), Expect = 7.500e-186 Identity = 277/310 (89.35%), Postives = 288/310 (92.90%), Query Frame = 1
Query: 1 MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSYVRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAATAAAPAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFPSAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGEASMYLCK 930
MLA MADSS RNEK+RTVRRGGRPRR GGTP AALRASVVL +LGRCSSYVRGAVAEAE DG +TPALS+ELDVGDESRV TADGSEGG++AAAA A APAVLFSSEWAAEYARGE GCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMK+VDC EESGGEAQ GWDCLFKPMPHLCTFPSAE E+MVSK LP+ADLVE ARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKV+QGEASMYLC+
Sbjct: 1 MLAMMADSSDRNEKARTVRRGGRPRRVGGTPAAALRASVVLVMLGRCSSYVRGAVAEAE-----DGLETPALSLELDVGDESRVNTADGSEGGESAAAA-ATAPAVLFSSEWAAEYARGEAGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKQVDCEEESGGEAQAGWDCLFKPMPHLCTFPSAE---EHMVSKGLPKADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCE 301
BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: GT23 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 8.530e-9 Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 763 MAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGEA 912
MA+ LW N+TPWLQ DV DVF+ PF+GLH+RRGDKV +GEA
Sbjct: 105 MARLLWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEA 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 550.8 |
| Seed ortholog evalue | 4e-154 |
| Seed eggNOG ortholog | 2880.D7G435 |
| KEGG ko | ko:K00717 |
| KEGG Reaction | R05988,R09319 |
| KEGG Pathway | ko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202 |
| KEGG Module | M00075 |
| EggNOG free text desc. | glycoprotein 6-alpha-L-fucosyltransferase activity |
| EggNOG OGs | KOG3705@1,KOG3705@2759 |
| EC | 2.4.1.68 |
| COG Functional cat. | M |
| CAZy | GT23 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 930 |
| Cds size | 930 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928296.9951026-CDS-Ecto-sp9_F_contig10770:987..1414 | 1622928296.9951026-CDS-Ecto-sp9_F_contig10770:987..1414 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 988..1414 + |
| 1692277825.9506273-CDS-Ecto-sp9_F_contig10770:987..1414 | 1692277825.9506273-CDS-Ecto-sp9_F_contig10770:987..1414 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 988..1414 + |
| 1622928297.0458293-CDS-Ecto-sp9_F_contig10770:1796..1978 | 1622928297.0458293-CDS-Ecto-sp9_F_contig10770:1796..1978 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 1797..1978 + |
| 1692277825.9673133-CDS-Ecto-sp9_F_contig10770:1796..1978 | 1692277825.9673133-CDS-Ecto-sp9_F_contig10770:1796..1978 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 1797..1978 + |
| 1622928297.0599806-CDS-Ecto-sp9_F_contig10770:2995..3145 | 1622928297.0599806-CDS-Ecto-sp9_F_contig10770:2995..3145 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 2996..3145 + |
| 1692277825.978845-CDS-Ecto-sp9_F_contig10770:2995..3145 | 1692277825.978845-CDS-Ecto-sp9_F_contig10770:2995..3145 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 2996..3145 + |
| 1622928297.0767193-CDS-Ecto-sp9_F_contig10770:4112..4283 | 1622928297.0767193-CDS-Ecto-sp9_F_contig10770:4112..4283 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 4113..4283 + |
| 1692277825.9884999-CDS-Ecto-sp9_F_contig10770:4112..4283 | 1692277825.9884999-CDS-Ecto-sp9_F_contig10770:4112..4283 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10770 4113..4283 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10770.674.1 >prot_Ecto-sp9_F_contig10770.674.1 ID=prot_Ecto-sp9_F_contig10770.674.1|Name=mRNA_Ecto-sp9_F_contig10770.674.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=310bp
MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSY VRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAAT AAAPAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVY ALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFP SAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIA ALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVT QGEASMYLCK back to topmRNA from alignment at Ecto-sp9_F_contig10770:988..4283+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig10770.674.1 ID=mRNA_Ecto-sp9_F_contig10770.674.1|Name=mRNA_Ecto-sp9_F_contig10770.674.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10770:988..4283+ (Ectocarpus species9 EcSCA_722f female) ATGCTGGCGACGATGGCGGATTCCTCCCACAGGAACGAAAAAAGCAGAAC
CGTCCGCCGCGGGGGGCGGCCCCGCCGTGGCGGCGGCACACCAAGGGCGG
CGCTGCGGGCTTCGGTGGTGCTGGCCGTGCTCGGGAGATGTAGTAGCTAC
GTCCGTGGCGCGGTCGCAGAGGCGGAGGTCGCAGAGGCGGAGGATGGGTC
GAAGACGCCCGCGCTCTCTATGGAGCTGGACGTTGGTGACGAATCGCGGG
TGACTACCGCTGACGGATCGGAAGGCGGGGATGCAGCAGCGGCGGCGACG
GCGGCCGCGCCGGCAGTGCTGTTTTCCTCGGAGTGGGCGGCGGAGTACGC
GCGGGGGGAGGAAGGTTGCGACCTGGCCAGGGGGAGCTTCATGTGGAGGG
GGCATGGCTTGGGCAGCAACGTGAACAGTGAGTGGGAGAGAGAGCGGGAC
GGACTTGCCCCGGGTTTGAACGCTTGATCGCTCTCTGACAACATCATCTC
GGTCGATTTTGGACACCGCAAAATGGAATGCCATTGCCTGTTTTCATGTC
GTCGGGACGCATCATGCTGTCGGAATACAGAACACACACCGAACATGATC
GGAGGCAAAAACTCGCCACACCTTATTTTGCTGGGTCGGATATTTTCCTC
TCGTATAGCTGTTTCCGTTGCTGAGTCATTATGTCATCCTAGCCTGCTTG
TACAGTTGCCGGCCACTCTTCTCTCTGCCGCCGCCGGCCCTCCATCGCAT
CCACACCCCACGTGTTACGCCGCGTCTGCCTTCTGTGTCTGGGGTCGACA
AACTCTCAGACATGCTGAACGCGTGGGTGTACGCCCTCTCAGTGGAGAAG
TGGAGCGACATGACCGTGGTCGTGGACGAAAACCAGATGAAACGGGTGGA
CTGCGGGGAGGAGAGCGGTGGAGAGGCTCAGACGGGCTGGGACTGCCTTT
TCAAGCCTATGCCGCATCTTTGCACCTTCCCCTCGGCGGAGGTGAGTGGG
GGCGACCAGGGGCACCGGGGCCCGGGGACAAGAAACGACGAAATCCGGCC
GAGGCTCAACTTCTTATTATTTCATCGCCATAGTATGGTGGAGGATCCAC
CGCTGAGGTGTGATTCTTCGACCTATGTTCTTCCCTGTCGTGAAACATTT
CGAGCCTCTGCTGTTTCTTGAACGAAGCGTTTCTTAAACTGCGGGCCCGG
CTTGGAGAGATGGAGATTCGGTTGAGCGAAAGCCGTTCAGCGGCCGAGCA
ATCTCCTCGTGTGGGACCGAGCCCCGGATCGTACTACAGTAGTGGGCCTT
TAACAACAACGCCGGTTGAATAGCGCCGGTGGCCCTGTGTAGAGCCGGTG
AAGTTGCTGGGCATAGACTGAATCACCAAGTCATGCTGTACTCTCAATAG
CGCCGGTCGATTCTCCGGGAACATGCCGGCGTTTTTGAGGGCCCGCTGGT
GTGGCAAGACTGTAGACATGTCCTCCCGCAGAGAAGGCAAGGGCGGCGAA
ATGATGTGGGTGGATGCTGCGAGCAATGATAGTATTGGTGGCCTGGACGG
TCACATTAATAGAGATCTCAGTCGTTCTTTGGCTTCGCCACCGCTACGTT
TGTACATGGCACCATGACGCACCCCGGAAGTGGCTGATTTGGTTACCCGC
AAGCAGGAAAAATGTGCTCCAACAGGCTGTGTTAGCGGTTTGTCCACCCC
GCGAGTGATATCCTGTCCTCTTTCGTTTCCGCGTTTATGGAGGAACACCA
TTGCCACGCTTTGCCGTGCTGTACACTTGCGGGTGCACTTTTTTTCCTGT
GAGCAGTTATGTCGAGGAATCAAACCTGGCGGACTCGTCCAATCACGTTA
GCAGGAGACGCACCTTATTGCAGGGCCTCGCTAACCCTGATCCAAGAACT
ACCAGGTCCCAATTGGGAGGAACCAACCCCCTTGCATTCGAACGTTTCGG
AGGTATTCATGAATCTGCCAACCATCGCCCAACGACTCCTTTTTTGCTAC
TTTTCAAGTCCTGGAAGGAGTACATGGTGTCGAAAGACCTACCCGAAGCG
GACCTGGTTGAGGTGGCGAGGCTGGACCAGGACGCCGTACGGTTCCACCC
GGAAGAGATAGTGGCGTCGTTGGAAGGGTCGGGGGTCGACCACATCGCTG
CCTTGGCGGTGCGTGTTTGGACGTTGTTGTTGTTTGTTGCATTGTTATTT
CGCGAATAACTCATAACCAGCAATGTACCCAGCAACGCCTGTCTCGGCCC
CACTGGCAAGATGGGAGAAATCGTTTCAGGGGGCGCGATAGGTTTGAGAT
TTTGTTGCTGACTGGACGCGGGCTTTGGGCGAGCAGCAGCAGTGCCACCG
TGGGCGAGATTGGTTTTGAGTCCAAGCACGTATAGTATGTAGTACAGTTT
CAGTGTGGCCTTGTTCGATCGAGGTACATCAAGTGCATTTGACAGCGGCC
GGCGTCACCAAGTCACAGCAGGACCAGGACAACGCGTGTTGTTGTTGGTG
GCCTGCCTGTTCTTGCTGTCAGTCGAAGAATGGGTTCGCTCGGGGTGTTC
CCCCCCCCCCCCCCCCCCCCCCACAGCGGCGCCGGGGGGGAAAGGGGCTG
CCGCGCCCCAAAAGACACACCCCACCCCCCCCCAGGGCGCNNNNNNNNNN
CCAGGACCACGTGGGTGGTTGGTGGGGGCCCGCCTTTTCCTCCGGGCCAG
CCGAGAAAGGGTTCGCGCGGGGGGTTTCCCCCCCCCCCCCCCCCCGCCCC
GGAAAAGGGGAACCAGCGGGTATAGATCTCGCTACCATAGAACAAAGCCA
CGCACACCCCAGAGGGACGAGTCTTTGTGATCCCGGGCTAGAGGTCTCCA
GCCGAGCGAACATTTCAAAGGAAGATGCAGATAATATTGTAGCCTGCGAG
CGCGAAATTACCTAGCGACTACCATTTTTTATCATATTCGGATGGACTTT
GAGATACTCATATGACACGAACAAGAAAGCACGCACCCGATACCTCTCGG
TTTTGTGTTGAACAACAGTTGTAGACGCGCCTTAGATCCCGCCCACTCCC
CACTTGCACGGCATCCCGCCCCCCCACCGAAAGCTGACACTCGCTCGCGA
AAAAAACACACGATGACGGACGCAGGCCATGGCCAAGTACTTGTGGAGCA
ACGTCACCCCGTGGCTCCAGGCCGACGTCGACTTCGTCACGCGCGCCTCG
CCCTCGGACGTGTTCCAGGAATCCCCGTTCCTGGGCCTGCACATACGGCG
GGGTGACAAGGTCACGCAAGGAGAGGCGTCCATGTACCTGTGTAAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig10770:988..4283+ >mRNA_Ecto-sp9_F_contig10770.674.1 ID=mRNA_Ecto-sp9_F_contig10770.674.1|Name=mRNA_Ecto-sp9_F_contig10770.674.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1860bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10770:988..4283+ (Ectocarpus species9 EcSCA_722f female) ATGCTGGCGACGATGGCGGATTCCTCCCACAGGAACGAAAAAAGCAGAAC CGTCCGCCGCGGGGGGCGGCCCCGCCGTGGCGGCGGCACACCAAGGGCGG CGCTGCGGGCTTCGGTGGTGCTGGCCGTGCTCGGGAGATGTAGTAGCTAC GTCCGTGGCGCGGTCGCAGAGGCGGAGGTCGCAGAGGCGGAGGATGGGTC GAAGACGCCCGCGCTCTCTATGGAGCTGGACGTTGGTGACGAATCGCGGG TGACTACCGCTGACGGATCGGAAGGCGGGGATGCAGCAGCGGCGGCGACG GCGGCCGCGCCGGCAGTGCTGTTTTCCTCGGAGTGGGCGGCGGAGTACGC GCGGGGGGAGGAAGGTTGCGACCTGGCCAGGGGGAGCTTCATGTGGAGGG GGCATGGCTTGGGCAGCAACGTGAACAATGCTGGCGACGATGGCGGATTC CTCCCACAGGAACGAAAAAAGCAGAACCGTCCGCCGCGGGGGGCGGCCCC GCCGTGGCGGCGGCACACCAAGGGCGGCGCTGCGGGCTTCGGTGGTGCTG GCCGTGCTCGGGAGATGTAGTAGCTACGTCCGTGGCGCGGTCGCAGAGGC GGAGGTCGCAGAGGCGGAGGATGGGTCGAAGACGCCCGCGCTCTCTATGG AGCTGGACGTTGGTGACGAATCGCGGGTGACTACCGCTGACGGATCGGAA GGCGGGGATGCAGCAGCGGCGGCGACGGCGGCCGCGCCGGCAGTGCTGTT TTCCTCGGAGTGGGCGGCGGAGTACGCGCGGGGGGAGGAAGGTTGCGACC TGGCCAGGGGGAGCTTCATGTGGAGGGGGCATGGCTTGGGCAGCAACGTG AACAACATGCTGAACGCGTGGGTGTACGCCCTCTCAGTGGAGAAGTGGAG CGACATGACCGTGGTCGTGGACGAAAACCAGATGAAACGGGTGGACTGCG GGGAGGAGAGCGGTGGAGAGGCTCAGACGGGCTGGGACTGCCTTTTCAAG CCTATGCCGCATCTTTGCACCTTCCCCTCGGCGGAGACATGCTGAACGCG TGGGTGTACGCCCTCTCAGTGGAGAAGTGGAGCGACATGACCGTGGTCGT GGACGAAAACCAGATGAAACGGGTGGACTGCGGGGAGGAGAGCGGTGGAG AGGCTCAGACGGGCTGGGACTGCCTTTTCAAGCCTATGCCGCATCTTTGC ACCTTCCCCTCGGCGGAGTCCTGGAAGGAGTACATGGTGTCGAAAGACCT ACCCGAAGCGGACCTGGTTGAGGTGGCGAGGCTGGACCAGGACGCCGTAC GGTTCCACCCGGAAGAGATAGTGGCGTCGTTGGAAGGGTCGGGGGTCGAC CACATCGCTGCCTTGGCGTCCTGGAAGGAGTACATGGTGTCGAAAGACCT ACCCGAAGCGGACCTGGTTGAGGTGGCGAGGCTGGACCAGGACGCCGTAC GGTTCCACCCGGAAGAGATAGTGGCGTCGTTGGAAGGGTCGGGGGTCGAC CACATCGCTGCCTTGGCGGCCATGGCCAAGTACTTGTGGAGCAACGTCAC CCCGTGGCTCCAGGCCGACGTCGACTTCGTCACGCGCGCCTCGCCCTCGG ACGTGTTCCAGGAATCCCCGTTCCTGGGCCTGCACATACGGCGGGGTGAC AAGGTCACGCAAGGAGAGGCGTCCATGTACCTGTGTAAGGCCATGGCCAA GTACTTGTGGAGCAACGTCACCCCGTGGCTCCAGGCCGACGTCGACTTCG TCACGCGCGCCTCGCCCTCGGACGTGTTCCAGGAATCCCCGTTCCTGGGC CTGCACATACGGCGGGGTGACAAGGTCACGCAAGGAGAGGCGTCCATGTA CCTGTGTAAG back to top
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