mRNA_Ecto-sp9_F_contig1076.662.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1076.662.1
Unique NamemRNA_Ecto-sp9_F_contig1076.662.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G295_ECTSI)

HSP 1 Score: 493 bits (1269), Expect = 6.750e-171
Identity = 286/319 (89.66%), Postives = 291/319 (91.22%), Query Frame = 1 
Query:  430 DFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDGTGSTRLVPDGKGRASSXXXXXXXXXXXKADD---KSTEDLLAEQLGGLGLXXXXXXXXXKSESKPTSGLTCEKRGQLLGHDAKVLELKTKNSRYADEINWKDIYWQLALGGAHALILGLHNRGTFGAGDMRHHSIGEVKARAEESGSASMVFLANTLRGITEAAHRIIGAASTAPARXXXXXXXXXXXXXXXXXXTRGESNPRVAAAAAVVVEYSPGRDSRRIRIRLATAADGAVPPF 1377
            DFKF IHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVV KMNMDGMALLVRSEVDACDGTGSTRLVP GKGRAS XXXXXXXXXXX       KSTEDLL EQLGGLGL         KSESKP SGLTCEKRGQLLGHDAKVLELKTKNSRYA+EI+WKDIYWQL LGGAHAL+LGLHNRGTFGAGD +HHSIGEVKARAEESGSASMVFLANTLRGIT+AAHRIIGAAST PARXXXXXXXXXXXXXXXXXXT GESNPRVAAAAAVVVEYSPGRDSR IRIRLATAADGAV PF
Sbjct:   43 DFKFIIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVTKMNMDGMALLVRSEVDACDGTGSTRLVPAGKGRASXXXXXXXXXXXXXXXXXXAKSTEDLLVEQLGGLGLSSSSPGGEGKSESKPASGLTCEKRGQLLGHDAKVLELKTKNSRYANEISWKDIYWQLTLGGAHALVLGLHNRGTFGAGDTKHHSIGEVKARAEESGSASMVFLANTLRGITKAAHRIIGAASTTPARXXXXXXXXXXXXXXXXXXTHGESNPRVAAAAAVVVEYSPGRDSRCIRIRLATAADGAVSPF 361
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LGG5_PERM5)

HSP 1 Score: 132 bits (331), Expect = 6.190e-31
Identity = 106/311 (34.08%), Postives = 144/311 (46.30%), Query Frame = 1 
Query:   82 LPTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDGTGSTRLVPDGKGRASSXXXXXXXXXXXKADDKSTEDLLAEQLGGLGLXXXXXXXXXKSESKPTSGLTCEKRGQLLGHDAKVLELKTKNSRYADEINWKDIYWQLALGGAHALIL 1014
            LP+  + +A+YNW   S  E PRIIVPG P   +   S+    L  D G  F DEN  R K  S  E LF+++ +C+PDFD   VDIVTDRNNLR L+R  +   DT     F +Q F+  +  +G        T+V TR       + G GH+FE+++T          G+FR V+ +N+  +AL+VRSE+DA DG G+ R V                    KA+  S      E   G GL                      K G    H     ELKTK+ +     +W D+Y QL LG  H L++
Sbjct:   19 LPSDAKEIATYNWHPSSTTEVPRIIVPGLPPFLID--SQEPPKLEYDQGTFFCDENLYRQKE-SPTESLFQAVAVCTPDFDWQAVDIVTDRNNLRKLMRALQPNWDT-----FDDQSFQIDLDVVGR-------TIVLTRVGPAEVQVFGCGHSFERQMTTAST-----LGSFRRVVALNLGSVALVVRSEIDAVDG-GAWRSVS------------------RKAEWSSLPGSRIEMKRGGGL----------------------KNGSECPH---YWELKTKSVKR--RFDWADVYGQLCLGDVHNLLI 263
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6THT4_PEROL)

HSP 1 Score: 124 bits (312), Expect = 3.120e-29
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 1 
Query:   85 PTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDG 672
            P+  + +A+YNW   S  E PR++VPG P   V   SR    L  D G  F DEN+ R K  S  E LF+++ IC+P+FD   VDIVTDRNNLR L+R  +   D+     F +Q F+  +  +G        T+V TR       + G GH+FE ++T   P      G+FR V+ +N+  +AL+VRSE+DA DG
Sbjct:   20 PSDAKEIATYNWHPSSTIEVPRMVVPGLPPFLVD--SRDPPKLEYDQGTFFCDENQYRQKE-SPTESLFQAVAICTPNFDWQAVDIVTDRNNLRKLMRALQPQWDS-----FDDQSFQIDLDIVGR-------TVVLTRVGPAESQVFGCGHSFEDQMTTPSPE-----GSFRRVVSLNLGRVALVVRSEIDAVDG 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LVX4_9AGAM)

HSP 1 Score: 126 bits (316), Expect = 1.480e-28
Identity = 103/347 (29.68%), Postives = 156/347 (44.96%), Query Frame = 1 
Query:   37 ELIRARDV-----QTGHRNVLPTGTEVVASYNW-STRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSS-VEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTR----ATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDGTGSTRLVPDGKGRASSXXXXXXXXXXXKADDKSTEDLLAEQLGGLGLXXXXXXXXXKSESKPT--SGLTCEKRGQLLGHDAKVLELKTKNSRYADEINWKDIYWQLALGGAHALILGLHNRGTF 1038
            ELIR  +V           V  +  + VASYNW S RS    P II+PG P  +  +     F + +D G S++D+N AR  P  + + PLF +L++ +P+FD+++VD+VTDRNNLR L R+  +  D         +DF+  +  IG        T+V  R     T G +   GYGH+FE++ T   P         R+V + +   + +L R E DACD                                 S  D L E +GG             S   PT  S +   + GQL+   + ++ELKT++++    + WKDI+ Q    G   +++G H  G F
Sbjct:   22 ELIRTLEVPEAKSSVDFNEVAISDLQPVASYNWTSARS----PTIIIPGCPMVWTKKEPP--FTIPRDSGVSYIDQNAARCLPLMNPLNPLFLALNVMAPEFDMASVDLVTDRNNLRKLHRWVTNSAD---------KDFRIDVQLIGRE------TVVLRRWEMHNTEGGNKSRGYGHSFERETTSVPPGFEGSTSHHRIV-RYSFGSLRILCRFEADACD-------------------------------LGSPSDGLEELVGGFSQIKVSAPPKLPSTGGPTKASKIRVVRAGQLVPQSS-LMELKTRSAK--GNVRWKDIWPQAFFSGTPTVVVGRHEEGNF 312
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PRJ3_PEROL)

HSP 1 Score: 125 bits (313), Expect = 2.100e-28
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 1 
Query:   85 PTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDG 672
            P+  + +A+YNW   S  E PR++VPG P   V   SR    L  D G  F DEN+ R K  S  E LF+++ IC+P+FD   VDIVTDRNNLR L+R  +   D+     F +Q F+  +  +G        T+V TR       + G GH+FE ++T   P      G+FR V+ +N+  +AL+VRSE+DA DG
Sbjct:   20 PSDAKEIATYNWHPSSTTEVPRMVVPGLPPFLVD--SRDPPELEYDQGTFFCDENQYRQKE-SPTESLFQAVAICTPNFDWQEVDIVTDRNNLRKLMRALQPQWDS-----FDDQSFQIDLDVVGR-------TVVLTRVGPAESRVFGCGHSFEDQMTTPSPE-----GSFRRVVSLNLGQVALVVRSEIDAVDG 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MD14_PEROL)

HSP 1 Score: 125 bits (313), Expect = 1.340e-27
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 1 
Query:   85 PTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDG 672
            P+  + +A+YNW   S  E PR++VPG P   V   SR    L  D G  F DEN+ R K  S  E LF+++ IC+P+FD   VDIVTDRNNLR L+R  +   D+     F +Q F+  +  +G        T+V TR       + G GH+FE ++T   P      G+FR V+ +N+  +AL+VRSE+DA DG
Sbjct:   20 PSDAKEIATYNWHPSSTTEVPRMVVPGLPPFLVD--SRDPPKLEYDQGTFFCDENQYRQKE-SPTESLFQAVAICTPNFDWQAVDIVTDRNNLRKLMRALQPQWDS-----FDDQSFQVDLDVVGR-------TVVLTRVGPAESQVFGCGHSFEDQMTTPSPE-----GSFRRVVSLNLGRVALVVRSEIDAVDG 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RED7_PEROL)

HSP 1 Score: 125 bits (313), Expect = 6.280e-27
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 1 
Query:   85 PTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDG 672
            P+  + +A+YNW   S  E PR++VPG P   V   SR    L  D G  F DEN+ R K  S  E LF+++ IC+P+FD   VDIVTDRNNLR L+R  +   D+     F +Q F+  +  +G        T+V TR       + G GH+FE ++T   P      G+FR V+ +N+  +AL+VRSE+DA DG
Sbjct:   20 PSDAKEIATYNWHPSSTTEVPRMVVPGLPPFLVD--SRDPPELEYDQGTFFCDENQYRQKE-SPTESLFQAVAICTPNFDWQEVDIVTDRNNLRKLMRALQPQWDS-----FDDQSFQIDLDVVGR-------TVVLTRVGPAESQVFGCGHSFEDQMTTPSPE-----GSFRRVVSLNLGQVALVVRSEIDAVDG 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M4C2_9AGAM)

HSP 1 Score: 121 bits (303), Expect = 1.290e-26
Identity = 105/362 (29.01%), Postives = 164/362 (45.30%), Query Frame = 1 
Query:   73 RNVLPTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKP-FSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTR----ATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDGTGSTRLVPDGKGRASSXXXXXXXXXXXKADDKSTEDLLAEQLGGLGLXXXXXXXXXKSESKPTSGLTCEKRGQLLGHDAKVLELKTKNSRYADEINWKDIYWQLALGGAHALILGLHNRGTFGAGDMRHHSIGEVKARAEESGSASMVFLANTLRGI 1143
            +NV P     V SYNW        P IIVPG+P  +  R  R  + +  D G +++D+N A   P  + +EPLF +L+   P+FD++ VD+VTDRNNLR LLR+     D         +DF+     +G+       T++ TR     T       G+GH+FE++ T+  P      G  R++ +  +  + +L RS VDA D   +    PDG                        +DLL E L G+ L             + TS +   + G+L+   A ++ELK++++R    I+WK ++ Q+        +LG H RG F +  +   S+ E+ +   E   A    L   LR I
Sbjct:   60 KNVRP-----VVSYNWKDAGS---PTIIVPGSPLIWSDR--RFPYTVQPDSGIAYIDQNAAHCLPSINPLEPLFLALNTMEPEFDMAAVDLVTDRNNLRKLLRWVTDDND---------RDFRIDAQLLGEE------TVILTRWEEHNTEDSTGFRGFGHSFEREATKVPPGCRGTTGHHRII-QYTLGDLRVLCRSVVDAYDPALAGDAAPDG-----------------------VDDLL-EGLSGITLASSAPTP---KTPESTSEINIVRAGKLVPQ-ASIMELKSRSTRAV--IDWKGVWPQVFFSATPTTVLGRHERGKFVS--VERKSLEEMDSAYAEEAEAGFGKLIQALREI 363
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G653_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 2.500e-26
Identity = 114/363 (31.40%), Postives = 164/363 (45.18%), Query Frame = 1 
Query:   88 TGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRAT----VGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDGTGSTRLVPDGKGRASSXXXXXXXXXXXKADDKSTEDLLAEQLGGLGLXXXXXXXXXKSESKPTSGLTCEKRGQLLG---HDAKVLELKTKNSRYADEINWKDIYWQLALGGAHALILGLHNRGTFGAGDMRHHSIGEVKARAEESGSASMVFLANTLRGITEAA 1155
            TG + VASYNW   S      ++VPGAP   VS+  +    L ++ G + +DEN  R  P + +EPLFRS+ +CSPDFD S VDIV+DRNN+R L  F      T T      +DF+  +  +GD        LV  +      V +    G+G +FE+   E+D   P  AGT R V+  ++ GM +L+ SE DA                                 D++T+D+  +    L +         K      S L   + G  L    +DA   EL TK  ++A E ++ D + Q+ L GA  L+LG H RG   + ++    I   K R E   S +M  LA  L  I + A
Sbjct:   26 TGLQTVASYNWLKDST-----LVVPGAP-GVVSKDLQSNLQLTREQGTNVIDENHLR-HPSAPLEPLFRSVMLCSPDFDFSDVDIVSDRNNIRKLHSFLEG---TRT------KDFRIDVCRVGD--------LVLLQRVEPKDVDYPEHAGFGFDFERVYAERD--RPHSAGTHRRVVYYDLAGMGMLIGSETDA-------------------------------VLDRNTDDIEYDLSTALAVVSINNETTQKDFKD--SDLKIRRGGAPLTTVKYDA--AELCTKAIKFAHEFDYADKWLQMYLAGAKYLLLGFHLRGYITSPELI--DIDMCKERVEGDPSRNMGRLAALLDEIVDVA 325
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MNN3_PERCH)

HSP 1 Score: 118 bits (296), Expect = 8.620e-26
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1 
Query:   85 PTGTEVVASYNWSTRSREEHPRIIVPGAPCNYVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDISTVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMDGMALLVRSEVDACDG 672
            PT  + + +YNW   S  + PR+IVPG P   +   S+    L  D G  F DEN  R K     E LF+++ IC+P FD   VD VTDRNNLR L+R  +   DT     + +Q F+  +  IG        T+V TR       + G GH+FE+++T++ P      G+FR ++ +++  ++L+VRSE+DA DG
Sbjct:   20 PTNAKEIGTYNWDPSSTTKTPRMIVPGLPPFLID--SQEPPHLEYDQGTFFCDENLYRQKK-CPTESLFQAVSICTPSFDWRKVDFVTDRNNLRKLMRAIQPNWDT-----YDDQSFQIDLDVIGT-------TVVLTRVGPAESKVFGCGHSFERQMTKERPE-----GSFRRIISLDLGSISLVVRSEIDAVDG 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1076.662.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.750e-17189.66protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.190e-3134.08protein n=2 Tax=Perkinsus marinus (strain ATCC 509... [more]
Uncharacterized3.120e-2939.80protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=... [more]
Uncharacterized1.480e-2829.68protein n=1 Tax=Botryobasidium botryosum FD-172 SS... [more]
Uncharacterized2.100e-2839.80protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID... [more]
Uncharacterized1.340e-2739.80protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID... [more]
Uncharacterized6.280e-2739.80protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID... [more]
Uncharacterized1.290e-2629.01protein n=1 Tax=Botryobasidium botryosum FD-172 SS... [more]
Uncharacterized2.500e-2631.40protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=6... [more]
Uncharacterized8.620e-2636.73protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1076contigEcto-sp9_F_contig1076:18875..23368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score494.2
Seed ortholog evalue6.5e-137
Seed eggNOG ortholog2880.D7G295
EggNOG OGs2CIRU@1,2SG1W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001990.1
Exons7
Model size1380
Cds size1353
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1076.662.1prot_Ecto-sp9_F_contig1076.662.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1076 18875..23341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.8924804-CDS-Ecto-sp9_F_contig1076:18874..191801622928295.8924804-CDS-Ecto-sp9_F_contig1076:18874..19180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 18875..19180 -
1692277825.4356565-CDS-Ecto-sp9_F_contig1076:18874..191801692277825.4356565-CDS-Ecto-sp9_F_contig1076:18874..19180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 18875..19180 -
1622928295.9054093-CDS-Ecto-sp9_F_contig1076:19830..199631622928295.9054093-CDS-Ecto-sp9_F_contig1076:19830..19963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 19831..19963 -
1692277825.445462-CDS-Ecto-sp9_F_contig1076:19830..199631692277825.445462-CDS-Ecto-sp9_F_contig1076:19830..19963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 19831..19963 -
1622928295.918043-CDS-Ecto-sp9_F_contig1076:20424..205161622928295.918043-CDS-Ecto-sp9_F_contig1076:20424..20516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 20425..20516 -
1692277825.4549317-CDS-Ecto-sp9_F_contig1076:20424..205161692277825.4549317-CDS-Ecto-sp9_F_contig1076:20424..20516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 20425..20516 -
1622928295.9313066-CDS-Ecto-sp9_F_contig1076:20940..211741622928295.9313066-CDS-Ecto-sp9_F_contig1076:20940..21174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 20941..21174 -
1692277825.4645376-CDS-Ecto-sp9_F_contig1076:20940..211741692277825.4645376-CDS-Ecto-sp9_F_contig1076:20940..21174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 20941..21174 -
1622928295.9434495-CDS-Ecto-sp9_F_contig1076:21676..218901622928295.9434495-CDS-Ecto-sp9_F_contig1076:21676..21890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 21677..21890 -
1692277825.4739742-CDS-Ecto-sp9_F_contig1076:21676..218901692277825.4739742-CDS-Ecto-sp9_F_contig1076:21676..21890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 21677..21890 -
1622928295.9592214-CDS-Ecto-sp9_F_contig1076:22283..226211622928295.9592214-CDS-Ecto-sp9_F_contig1076:22283..22621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 22284..22621 -
1692277825.4839225-CDS-Ecto-sp9_F_contig1076:22283..226211692277825.4839225-CDS-Ecto-sp9_F_contig1076:22283..22621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 22284..22621 -
1622928295.9768188-CDS-Ecto-sp9_F_contig1076:23305..233411622928295.9768188-CDS-Ecto-sp9_F_contig1076:23305..23341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23306..23341 -
1692277825.4942849-CDS-Ecto-sp9_F_contig1076:23305..233411692277825.4942849-CDS-Ecto-sp9_F_contig1076:23305..23341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 23306..23341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.9933674-UTR-Ecto-sp9_F_contig1076:23341..233681622928295.9933674-UTR-Ecto-sp9_F_contig1076:23341..23368Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 23342..23368 -
1692277825.5045743-UTR-Ecto-sp9_F_contig1076:23341..233681692277825.5045743-UTR-Ecto-sp9_F_contig1076:23341..23368Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 23342..23368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1076.662.1

>prot_Ecto-sp9_F_contig1076.662.1 ID=prot_Ecto-sp9_F_contig1076.662.1|Name=mRNA_Ecto-sp9_F_contig1076.662.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=451bp
MAEELIRARDVQTGHRNVLPTGTEVVASYNWSTRSREEHPRIIVPGAPCN
YVSRMSRHGFVLGKDGGDSFVDENRARMKPFSSVEPLFRSLDICSPDFDI
STVDIVTDRNNLRNLLRFCRSPGDTTTANEFGNQDFKFFIHSIGDSNGHG
DPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVMKMNMD
GMALLVRSEVDACDGTGSTRLVPDGKGRASSSGGGGGASTSAKADDKSTE
DLLAEQLGGLGLSSSSSGGGGKSESKPTSGLTCEKRGQLLGHDAKVLELK
TKNSRYADEINWKDIYWQLALGGAHALILGLHNRGTFGAGDMRHHSIGEV
KARAEESGSASMVFLANTLRGITEAAHRIIGAASTAPARPAAPATPSAAG
GGRGGTGTRGESNPRVAAAAAVVVEYSPGRDSRRIRIRLATAADGAVPPF
*
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mRNA from alignment at Ecto-sp9_F_contig1076:18875..23368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1076.662.1 ID=mRNA_Ecto-sp9_F_contig1076.662.1|Name=mRNA_Ecto-sp9_F_contig1076.662.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:18875..23368- (Ectocarpus species9 EcSCA_722f female)
CGCCAGTAAACGCCCCCGATAACGCCCATGGCTGAAGAACTCATTCGCGC
TCGTGATGTTCAGGTGTGTGTGTGTGAAGAGCAGGCATATAGTCTACACA
CTCGACGCAGAGCATTCGTACATGAGCAAGGCAGTTCCTCGTGCCACAGA
TTTACAGATCACAGCCAGCTTTATTTTGTAGAAAGTCTCGGCATGACCTT
GAACTCGTGCAAGACGTACGGATCACTGCCGTAAATTGTGCTACGTGCCT
TGAGCGGATCATGCACATCAACACCACGCAGTAGTCTACAGCCGTGCCAA
CGAACCAAACAACAAGCTGTTTTACGAAACGGCAAACACTTCGAATCCAG
TCAATCGACCCGGCTGGCACCACCGTCGGTCCGTCTGCTCTTCATTGTAT
CCATATGATCAATATGTGTGTCGTCCCCCTCCTCCCCAACCCGCAGCCCG
CCTTGACCAGCAGATGCAGCAAGTTGTGTACCTAGTCTACCTGGTCGTTC
GTAGAGCACTGCTGTATGTAGTCTACACGCACGAGGCAGACAGATGTCGT
ACTCGATATATCAACAACAACTTTTTCAGTCTGCACCACCAGCTCTATCG
CCAACAGACAAGTCTTGCACCTCGTACAGCAGTATTACTGTAGAACATAA
TGTACCACTTACATAAGTCAGCAGTGTTTGTACCACAGCAAAATGTGTGT
TGCTCTTAATGGTGCCATCCAACCTCTTCGTACGATCGTATCTGCAGACT
GGCCACCGCAACGTGCTCCCCACGGGCACCGAGGTGGTAGCCTCCTACAA
TTGGAGCACGAGGTCGAGAGAGGAGCACCCTCGCATCATCGTCCCTGGCG
CGCCGTGCAATTATGTCAGCCGCATGAGCCGTCACGGGTTCGTCTTGGGG
AAGGACGGCGGAGATTCATTTGTCGACGAAAACCGCGCGCGGATGAAACC
TTTCAGCAGTGTCGAGCCGCTGTTTCGCTCCCTCGACATCTGCTCCCCCG
ATTTCGACATCAGCACGGTCGACATCGTGACGGATCGCAACAACCTGAGG
AACCTGCTCAGGTTCTGCCGCAGCCCCGGGGACACGTGAGTTGTGTTGGG
TCAACCACGCGGCGCATACCCCGGTAGGTAGCGTTCCTTTTCTGTACGTC
AAGAGGTTAGCGGGTGGGGGATGGTGCGGATTTTTTTTGAACAATGTCAA
CGGTTCTGTCATGTGCGTGTCGTGGCCCGCTTATCTACTATGTACTTGGA
TTTCGTTCGTATTTTATCCACTGCTATGCTCTTGGCCCCTTGTACAAGCT
TTGGGGATAGAAAGCGCACGTTACTGGGGCATCGGAGTCAGCGGGCACTC
CGCGCAAGCAAGTGCGCATTTTATTTTTTTCATGCACATCGAAAGGCTCC
TGATGAGCAATAATTTTGGATAGATTTCGCGCTCCCCCCGCTTCTTGCCG
CTCGCAACTTGTCGTATAATTTCCATAGCACCACGGCCAACGAATTTGGC
AATCAGGACTTTAAATTCTTTATCCACTCCATTGGCGACAGCAACGGACA
CGGCGACCCGACCCTGGTCTTCACCCGGGCGACGGTAGGCCATCACAACA
TTAACGGGTACGGCCACAACTTCGAGAAAAAGCTCACCGAGAAGGATCCG
CATGCTCCCTGGGACGCCGGGACGTTTCGCGTCGTCATGAAGGTCGAGAA
CTACTGTACCTACGTACCTGCCCATCGTTCGTAGAGTACGCCTTCCGCAA
CGCTTGCACCATGATTTCGAAATATTCTGGGTGACTACATACGGCACCGA
CGCACATAAAACATGATGATGGAGAAAACTAGGCTAATAGTCTAGACAAG
TTAGATTGACATTCTCACAACATACGTATCGCTTGTCTCCTCTAGTCGTA
GATCGATTGACATCTAGAGCATCACAGACAACTTCCCGTTCGAGGTATTG
CTCAGAGGGAACAGCGATATTTTTCTCCCTCTTCTGATATCTCTCACGCT
GGTGAAGTCGGGGTCAAGCTTGTTCCCCCACCTTCCTTGCGCGCAAGTGT
TCTGTTAAGTCCGTTTCTCTGATGAAAGTTGAGCAACACGCGACCGAAGA
TTTGCGCACGTTCCTGACTGTAGAGTTGTCCTCGTTTGTACACAGTTTTT
TCATCGAACGCGCCCTTCCCCGTTGCGTGTGTAACCCTCCCCAGATGAAC
ATGGATGGAATGGCGCTGCTCGTGCGCTCTGAGGTGGACGCCTGCGACGG
GACTGGTTCCACCAGGCTTGTTCCTGATGGGAAGGGGCGCGCTTCATCTT
CCGGTGGTGGTGGTGGTGCAAGTACCTCAGCCAAGGCTGACGACAAGAGT
ACGGAAGACCTGCTGGCTGAACAGCTGGGTGGCCTGGGGCTCTCTTCTTC
CTCGTCGGGAGGAGGAGGCAAGAGTGAGGTGGGCCGACGCATTTATTCGT
GATTGTTTGCTGTTGTCTTACAAAAGAAAATGAAAAACAAGATTGAAACG
AACAGGGAGTCCTGGCTAGATTGAAACGAACAGGGAGTCCTGGCTTACTT
AACAGGTCTCATATATTGTTTCGATTCGAGGACCACACATGGGGGGGGGA
GTCAATCCCATAGAAACAAGCAAATCATTTTTGCCATTGACACAACATCG
GCGCCAGCTCTCCTTCAACCTCGAATCGCAGCGGCGATTGTATTTTAACT
TTCTTCCGTCGAAGCACTTAAAGGGCTACAAGCAAGCGTAGCCTCACCAC
TAACACAACCACGCGCACCACAACATGAGTCCTTTCCTGTTTTCGTTGTT
TGATGCCCTCCCTTCTCCCCTCCCCTCTCGGGCATGCACGCTGCCGTTCA
AGTCGAAGCCTACTTCTGGCCTGACGTGCGAAAAGAGGGGGCAGCTTCTC
GGACACGACGCCAAGGTGTTGGAGCTCAAGACCAAAAACTCAAGGTATGA
TGCGTCGTCTTCGTGCTCCAAAACAACACGACATGAAACATGGTTTCTGA
GGACTAATCTATATGCCTGGGAGGCACAGGCTGCACGGCTTGACCGAGGC
TCGTTGGGGCAAAAAACCTGGGCTATTTCAGCAACCATCACCGCTATTGC
GAAACAAGCCTGGTCATTTGTGTCTTAATGAATACCTGAGGGTTGAAAAG
ACGGGAAGTGACATCGATCGGAAAAAATAGACTAGGGAAAACATATTTTG
ATCCGCTTTTAAGAAGGAACGATTGGCCATCGGTGATCGGTCCCGTGGGA
ACGATGCTCCGTCCTCTCGAGGACGCGTGGTNNNNNNNNNNGCCCTACCC
TCGTACGAAAAAAACAGACCCACCCCCCCCCCCCCCCCCCCCCCACGAAG
GTTTTCTCTCACCGCGCGTACTCACTCTTTCAACCCCATGCATGCCGTCC
CGAAGGTACGCCGATGAGATCAACTGGAAGGACATCTACTGGCAGCTGGC
CCTGGGCGGCGCTCACGCGCTGATCCTCGGCCTTCACAACCGCGGGACCT
TTGGTGCCGGGGACATGAGGCACCATTCCATCGGCGAGGTGTGGGACAAC
CCTACGAAAATTGCCTTCAACGAGAACACACATGATCCGCCTCAGGCGTA
ACGTTTTTTTTTTCTTGGTCTACAAGCATGCCGCCATGAAGTCCGATGAT
ATCTATACGCGTGCCAACATTTCTTGTTGAGAAAGCAAGCACCGAACGCC
CTTCGATATGAAGCCGTTTCGTTTGTATCGTATTTGGATTCGAGACAGAG
TTATGACGCCCGGCGTGGGGTGGCATCGATGCTCTCTCCCAGTTGAACCC
ATTCCTTTCCTTCGCGATATTCCACCTGTAAATGATGAGCTTGCTTTTGC
GCCATGGCGAACGCATCGACCGATGTTATTTTACGCAGTTGCTTCTGAGC
ACATGTGCCCGAAAACAAGTGGGGACGGCGCGACTCGAAAACGTCCAACA
GGAGACTGCTGTTTTCGTAGAGCATTTATGTCAAGCATTGACACCGTGCT
TGAGGATCAACGACGACCTTATCCAGGAAAGGGATAAACTGTTATTGACG
ACCAAACAAACAGAACCAAAATTTAGCAAGCATTGTTCCACCATAACGTG
CAGACAACCACGTCATTGTGTACAAGTATGCGAGCCGTCGCATCTAAATA
TTTTCTGCTACTGTTGTGTACGACTGTCCGTGCACCAGGTCAAAGCTCGC
GCGGAAGAGTCCGGCTCGGCGTCCATGGTGTTCCTGGCGAACACCCTGCG
CGGTATCACGGAGGCGGCGCACCGCATCATCGGTGCCGCCTCTACTGCAC
CCGCGCGCCCGGCTGCGCCTGCTACGCCGTCCGCTGCCGGCGGTGGTCGT
GGCGGGACGGGAACACGCGGCGAATCAAACCCTCGCGTCGCCGCCGCCGC
TGCCGTGGTCGTCGAGTACTCGCCCGGCCGCGACAGCAGGCGCATCCGCA
TCAGGCTTGCCACCGCCGCGGATGGAGCCGTTCCTCCCTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1076:18875..23368-

>mRNA_Ecto-sp9_F_contig1076.662.1 ID=mRNA_Ecto-sp9_F_contig1076.662.1|Name=mRNA_Ecto-sp9_F_contig1076.662.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2706bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:18875..23368- (Ectocarpus species9 EcSCA_722f female)
ATGGCTGAAGAACTCATTCGCGCTCGTGATGTTCAGATGGCTGAAGAACT
CATTCGCGCTCGTGATGTTCAGACTGGCCACCGCAACGTGCTCCCCACGG
GCACCGAGGTGGTAGCCTCCTACAATTGGAGCACGAGGTCGAGAGAGGAG
CACCCTCGCATCATCGTCCCTGGCGCGCCGTGCAATTATGTCAGCCGCAT
GAGCCGTCACGGGTTCGTCTTGGGGAAGGACGGCGGAGATTCATTTGTCG
ACGAAAACCGCGCGCGGATGAAACCTTTCAGCAGTGTCGAGCCGCTGTTT
CGCTCCCTCGACATCTGCTCCCCCGATTTCGACATCAGCACGGTCGACAT
CGTGACGGATCGCAACAACCTGAGGAACCTGCTCAGGTTCTGCCGCAGCC
CCGGGGACACACTGGCCACCGCAACGTGCTCCCCACGGGCACCGAGGTGG
TAGCCTCCTACAATTGGAGCACGAGGTCGAGAGAGGAGCACCCTCGCATC
ATCGTCCCTGGCGCGCCGTGCAATTATGTCAGCCGCATGAGCCGTCACGG
GTTCGTCTTGGGGAAGGACGGCGGAGATTCATTTGTCGACGAAAACCGCG
CGCGGATGAAACCTTTCAGCAGTGTCGAGCCGCTGTTTCGCTCCCTCGAC
ATCTGCTCCCCCGATTTCGACATCAGCACGGTCGACATCGTGACGGATCG
CAACAACCTGAGGAACCTGCTCAGGTTCTGCCGCAGCCCCGGGGACACCA
CCACGGCCAACGAATTTGGCAATCAGGACTTTAAATTCTTTATCCACTCC
ATTGGCGACAGCAACGGACACGGCGACCCGACCCTGGTCTTCACCCGGGC
GACGGTAGGCCATCACAACATTAACGGGTACGGCCACAACTTCGAGAAAA
AGCTCACCGAGAAGGATCCGCATGCTCCCTGGGACGCCGGGACGTTTCGC
GTCGTCATGAAGCACCACGGCCAACGAATTTGGCAATCAGGACTTTAAAT
TCTTTATCCACTCCATTGGCGACAGCAACGGACACGGCGACCCGACCCTG
GTCTTCACCCGGGCGACGGTAGGCCATCACAACATTAACGGGTACGGCCA
CAACTTCGAGAAAAAGCTCACCGAGAAGGATCCGCATGCTCCCTGGGACG
CCGGGACGTTTCGCGTCGTCATGAAGATGAACATGGATGGAATGGCGCTG
CTCGTGCGCTCTGAGGTGGACGCCTGCGACGGGACTGGTTCCACCAGGCT
TGTTCCTGATGGGAAGGGGCGCGCTTCATCTTCCGGTGGTGGTGGTGGTG
CAAGTACCTCAGCCAAGGCTGACGACAAGAGTACGGAAGACCTGCTGGCT
GAACAGCTGGGTGGCCTGGGGCTCTCTTCTTCCTCGTCGGGAGGAGGAGG
CAAGAGTGAGATGAACATGGATGGAATGGCGCTGCTCGTGCGCTCTGAGG
TGGACGCCTGCGACGGGACTGGTTCCACCAGGCTTGTTCCTGATGGGAAG
GGGCGCGCTTCATCTTCCGGTGGTGGTGGTGGTGCAAGTACCTCAGCCAA
GGCTGACGACAAGAGTACGGAAGACCTGCTGGCTGAACAGCTGGGTGGCC
TGGGGCTCTCTTCTTCCTCGTCGGGAGGAGGAGGCAAGAGTGAGTCGAAG
CCTACTTCTGGCCTGACGTGCGAAAAGAGGGGGCAGCTTCTCGGACACGA
CGCCAAGGTGTTGGAGCTCAAGACCAAAAACTCAAGTCGAAGCCTACTTC
TGGCCTGACGTGCGAAAAGAGGGGGCAGCTTCTCGGACACGACGCCAAGG
TGTTGGAGCTCAAGACCAAAAACTCAAGGTACGCCGATGAGATCAACTGG
AAGGACATCTACTGGCAGCTGGCCCTGGGCGGCGCTCACGCGCTGATCCT
CGGCCTTCACAACCGCGGGACCTTTGGTGCCGGGGACATGAGGCACCATT
CCATCGGCGAGGTACGCCGATGAGATCAACTGGAAGGACATCTACTGGCA
GCTGGCCCTGGGCGGCGCTCACGCGCTGATCCTCGGCCTTCACAACCGCG
GGACCTTTGGTGCCGGGGACATGAGGCACCATTCCATCGGCGAGGTCAAA
GCTCGCGCGGAAGAGTCCGGCTCGGCGTCCATGGTGTTCCTGGCGAACAC
CCTGCGCGGTATCACGGAGGCGGCGCACCGCATCATCGGTGCCGCCTCTA
CTGCACCCGCGCGCCCGGCTGCGCCTGCTACGCCGTCCGCTGCCGGCGGT
GGTCGTGGCGGGACGGGAACACGCGGCGAATCAAACCCTCGCGTCGCCGC
CGCCGCTGCCGTGGTCGTCGAGTACTCGCCCGGCCGCGACAGCAGGCGCA
TCCGCATCAGGCTTGCCACCGCCGCGGATGGAGCCGTTCCTCCCTTCTGA
GTCAAAGCTCGCGCGGAAGAGTCCGGCTCGGCGTCCATGGTGTTCCTGGC
GAACACCCTGCGCGGTATCACGGAGGCGGCGCACCGCATCATCGGTGCCG
CCTCTACTGCACCCGCGCGCCCGGCTGCGCCTGCTACGCCGTCCGCTGCC
GGCGGTGGTCGTGGCGGGACGGGAACACGCGGCGAATCAAACCCTCGCGT
CGCCGCCGCCGCTGCCGTGGTCGTCGAGTACTCGCCCGGCCGCGACAGCA
GGCGCATCCGCATCAGGCTTGCCACCGCCGCGGATGGAGCCGTTCCTCCC
TTCTGA
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