mRNA_Ecto-sp9_F_contig1076.661.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1076.661.1
Unique NamemRNA_Ecto-sp9_F_contig1076.661.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G294_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 3.470e-157
Identity = 232/235 (98.72%), Postives = 232/235 (98.72%), Query Frame = 3 
Query:  174 HAQGDSGRRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDEEEYGNDGSEN 878
            HAQGDS RRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEA SRRDAVSMEDMMPPSYSDEEEYGN GSEN
Sbjct:   44 HAQGDSWRRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGNHGSEN 278
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ70_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.740e-98
Identity = 148/223 (66.37%), Postives = 181/223 (81.17%), Query Frame = 3 
Query:  201 NGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDEEEYGNDG 869
            +GG A E  D +   +   A+ + V LRMWDFEQCD K+CTGR+LCRLG ++EM+LGAPF GLVLSPNGE TVSP DRE+V+TLG+SVIDCSWARLD++PFHQMRRGHHRLLPFLVAANPVNYGKP KLTCAEA+AATL IVG +++   VMDQFGWG EFL++N DVL+ YAAC+ GAEV+ AQAA+LA+CE EA +RR     +DM+PP+Y   +E  ++G
Sbjct:   52 SGGRAAETADEQEGAAAAAAKGLGVRLRMWDFEQCDPKRCTGRRLCRLGFIKEMDLGAPFQGLVLSPNGEKTVSPEDREIVDTLGISVIDCSWARLDDVPFHQMRRGHHRLLPFLVAANPVNYGKPFKLTCAEALAATLVIVGLREQGALVMDQFGWGPEFLKINADVLDRYAACSSGAEVITAQAAYLAQCEAEAAARRRP---DDMLPPAYDSSDEGESEG 271
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8Q2_PYTOL)

HSP 1 Score: 255 bits (651), Expect = 4.180e-76
Identity = 125/201 (62.19%), Postives = 156/201 (77.61%), Query Frame = 3 
Query:  195 RRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISR 797
            RR+G AA      E  E     +S  V+LRMWDF+QCD K+CTGRK+CRLG V+ M+ G PF G+VLSP GE  VSPAD E+V +LG+SVIDCSWA++ E+P+ Q+R G+HRLLPFLVAAN VNYG+P KLTCAEAIAATLYIVG +DEAV+V+++F WG EFL++N + LE YAAC   A+VV+AQ A+LA CEEE  +R
Sbjct:   32 RRDGAAAPRERGEEETEINFKRRSFPVTLRMWDFQQCDSKRCTGRKMCRLGYVKSMKPGQPFRGIVLSPAGEQAVSPADLEIVTSLGISVIDCSWAKVQELPYKQLRSGYHRLLPFLVAANSVNYGRPHKLTCAEAIAATLYIVGMKDEAVQVLEEFQWGMEFLKINFECLEAYAACETSADVVEAQNAYLAACEEELRAR 232
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA7_PHYSP)

HSP 1 Score: 251 bits (641), Expect = 4.240e-75
Identity = 123/196 (62.76%), Postives = 152/196 (77.55%), Query Frame = 3 
Query:  261 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDE 848
            ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR +VE  G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC D A+VV AQ A+LA C+ E   R   +    M+P   SD+
Sbjct:   40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGESIVSPADRGIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACEDSAQVVAAQEAYLAACQAENEQRLQRM----MLPSLESDD 231
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYV1_PYTIN)

HSP 1 Score: 251 bits (642), Expect = 7.990e-75
Identity = 129/232 (55.60%), Postives = 169/232 (72.84%), Query Frame = 3 
Query:  177 AQGDSGRRNGGAAREMIDRERDES-GELA---QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDEEEYG 860
            A G   R++ G    ++ +ER+E   E++   +S  ++LRMWDF+QCD K+CTGRKLCRL  V+ M+ G PF G+VLSP GE  +SPADRE+VETLG+SVIDCSWA++ E+P+ Q+R G+HRLLPF   AN VNYGKP KL+CAEAIAATLYIVG +DEAV++M++F WG EFL++N D LE YAAC + A+VV+AQ A+LA CEEE  +R     +  +      D EE G
Sbjct:   20 AGGRQPRKSRGRDAPVVSQEREEGESEISFKRRSFPITLRMWDFQQCDSKRCTGRKLCRLAYVKSMKPGQPFRGIVLSPAGEQALSPADREIVETLGISVIDCSWAKVQELPYKQLRSGYHRLLPF--HANTVNYGKPYKLSCAEAIAATLYIVGMKDEAVQIMEEFSWGMEFLKINMDCLEAYAACENSAQVVEAQNAYLAACEEEHKARSRRFDLPSLDSDGEDDYEEEG 249
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVZ0_9STRA)

HSP 1 Score: 247 bits (631), Expect = 3.790e-73
Identity = 118/194 (60.82%), Postives = 151/194 (77.84%), Query Frame = 3 
Query:  234 ERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSM 815
            E  E+    ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VS AD ++V + G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG QDEA++VMD+F WGAEFL++N D L+ YAAC + AEVV+AQ A+LA C+ E   R+  + +
Sbjct:   31 EESETNYRRRAFPVTLRMWDFQQCDAKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQAVSRADLDLVTSSGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLQDEAIQVMDEFSWGAEFLKINADCLQAYAACTNSAEVVEAQNAYLAACQTEQKERQQHMDL 224
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG3_GLOUD)

HSP 1 Score: 248 bits (632), Expect = 4.760e-73
Identity = 124/206 (60.19%), Postives = 156/206 (75.73%), Query Frame = 3 
Query:  234 ERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDEE 851
            E  E+    +S  V+LRMWDF+QCD K+CTGRKLCR G V+ M+ GA F GLVLSP GE  VSPADRE+V ++G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATL+IVG QDEA +VM++F WG EF+++N D LE YAAC +  EV+ AQ A+LA CE+E   +RD     D +P   SD+E
Sbjct:   46 EESEANFKRRSFPVTLRMWDFQQCDSKRCTGRKLCRFGYVKSMKPGAHFRGLVLSPAGEQIVSPADREIVTSIGISVIDCSWAKVQELPYKQVRSGAHRLLPFLVAANSVNYGRPYKLSCAEAIAATLFIVGLQDEAFQVMEEFPWGMEFMKINMDCLEAYAACENSEEVIAAQNAYLAACEQE---QRDRAKRFD-LPSLESDDE 247
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNH6_9STRA)

HSP 1 Score: 241 bits (615), Expect = 2.490e-72
Identity = 118/197 (59.90%), Postives = 152/197 (77.16%), Query Frame = 3 
Query:  261 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSMEDMMPPSYSDEE 851
            ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSP+DR +VE  G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+C+EAIAATLYIVG ++EAV++MD+F WG EFL++N D LE YAAC +  +VV+AQ A+LA C+ E   R   ++    +P   SDEE
Sbjct:   35 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEHIVSPSDRSIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCSEAIAATLYIVGLKEEAVQLMDEFTWGPEFLKINADCLEAYAACENSEQVVEAQNAYLAACQTEHEQRLLRMN----LPTVESDEE 227
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KBB7_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.180e-72
Identity = 115/175 (65.71%), Postives = 143/175 (81.71%), Query Frame = 3 
Query:  261 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEE 785
            ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR +V+  G+S IDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC + AEVV+AQ A+L  C+ E
Sbjct:   40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIQSMKPGAHFRGLVLSPAGEQVVSPADRGIVQGSGISAIDCSWAKVQELPYKQVRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACENSAEVVEAQTAYLTACQTE 214
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BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Match: 18S (rRNA aminocarboxypropyltransferase n=11 Tax=Phytophthora TaxID=4783 RepID=D0P2X0_PHYIT)

HSP 1 Score: 243 bits (620), Expect = 3.380e-72
Identity = 113/181 (62.43%), Postives = 144/181 (79.56%), Query Frame = 3 
Query:  273 VSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEAISRRDAVSM 815
            ++LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR +VE  G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG + EA ++MD+F WGAEFL++N D LE Y+AC +  EVV+AQ A+L  C+ E + R   +++
Sbjct:    1 MTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQIVSPADRTIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKQEATQLMDEFSWGAEFLKINADCLEAYSACTNSTEVVEAQDAYLTACQTEHMERLQRINL 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1076.661.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
18S3.470e-15798.72rRNA aminocarboxypropyltransferase n=2 Tax=Ectocar... [more]
18S1.740e-9866.37rRNA aminocarboxypropyltransferase n=1 Tax=Tribone... [more]
Uncharacterized4.180e-7662.19protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
18S4.240e-7562.76rRNA aminocarboxypropyltransferase n=1 Tax=Phytoph... [more]
18S7.990e-7555.60rRNA aminocarboxypropyltransferase n=1 Tax=Pythium... [more]
18S3.790e-7360.82rRNA aminocarboxypropyltransferase n=2 Tax=Peronos... [more]
18S4.760e-7360.19rRNA aminocarboxypropyltransferase n=1 Tax=Globisp... [more]
18S2.490e-7259.90rRNA aminocarboxypropyltransferase n=2 Tax=Phytoph... [more]
18S3.180e-7265.71rRNA aminocarboxypropyltransferase n=2 Tax=Phytoph... [more]
18S3.380e-7262.43rRNA aminocarboxypropyltransferase n=11 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1076contigEcto-sp9_F_contig1076:10790..16732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score467.6
Seed ortholog evalue5.1e-129
Seed eggNOG ortholog2880.D7G294
Preferred nameTSR3
KEGG koko:K09140
GOsGO:0000154,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.rRNA processing
EggNOG OGsCOG2042@1,KOG3154@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNase L inhibitor RLI, possible metal-binding domain
Ec32 orthologEc-16_002000.1
Exons7
Model size1653
Cds size1074
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.7509384-UTR-Ecto-sp9_F_contig1076:10789..108181622928295.7509384-UTR-Ecto-sp9_F_contig1076:10789..10818Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 10790..10818 +
1692277825.3515651-UTR-Ecto-sp9_F_contig1076:10789..108181692277825.3515651-UTR-Ecto-sp9_F_contig1076:10789..10818Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 10790..10818 +
1622928295.8560443-UTR-Ecto-sp9_F_contig1076:16182..167321622928295.8560443-UTR-Ecto-sp9_F_contig1076:16182..16732Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 16183..16732 +
1692277825.4277232-UTR-Ecto-sp9_F_contig1076:16182..167321692277825.4277232-UTR-Ecto-sp9_F_contig1076:16182..16732Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1076 16183..16732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.764858-CDS-Ecto-sp9_F_contig1076:10818..111341622928295.764858-CDS-Ecto-sp9_F_contig1076:10818..11134Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 10819..11134 +
1692277825.3634322-CDS-Ecto-sp9_F_contig1076:10818..111341692277825.3634322-CDS-Ecto-sp9_F_contig1076:10818..11134Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 10819..11134 +
1622928295.7752752-CDS-Ecto-sp9_F_contig1076:11827..119161622928295.7752752-CDS-Ecto-sp9_F_contig1076:11827..11916Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 11828..11916 +
1692277825.3715098-CDS-Ecto-sp9_F_contig1076:11827..119161692277825.3715098-CDS-Ecto-sp9_F_contig1076:11827..11916Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 11828..11916 +
1622928295.7866168-CDS-Ecto-sp9_F_contig1076:12481..125561622928295.7866168-CDS-Ecto-sp9_F_contig1076:12481..12556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 12482..12556 +
1692277825.3811007-CDS-Ecto-sp9_F_contig1076:12481..125561692277825.3811007-CDS-Ecto-sp9_F_contig1076:12481..12556Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 12482..12556 +
1622928295.805745-CDS-Ecto-sp9_F_contig1076:13062..131881622928295.805745-CDS-Ecto-sp9_F_contig1076:13062..13188Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 13063..13188 +
1692277825.3895237-CDS-Ecto-sp9_F_contig1076:13062..131881692277825.3895237-CDS-Ecto-sp9_F_contig1076:13062..13188Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 13063..13188 +
1622928295.817524-CDS-Ecto-sp9_F_contig1076:14393..145131622928295.817524-CDS-Ecto-sp9_F_contig1076:14393..14513Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 14394..14513 +
1692277825.3995533-CDS-Ecto-sp9_F_contig1076:14393..145131692277825.3995533-CDS-Ecto-sp9_F_contig1076:14393..14513Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 14394..14513 +
1622928295.8283753-CDS-Ecto-sp9_F_contig1076:15188..153511622928295.8283753-CDS-Ecto-sp9_F_contig1076:15188..15351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 15189..15351 +
1692277825.4108884-CDS-Ecto-sp9_F_contig1076:15188..153511692277825.4108884-CDS-Ecto-sp9_F_contig1076:15188..15351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 15189..15351 +
1622928295.8402045-CDS-Ecto-sp9_F_contig1076:15997..161821622928295.8402045-CDS-Ecto-sp9_F_contig1076:15997..16182Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 15998..16182 +
1692277825.4195936-CDS-Ecto-sp9_F_contig1076:15997..161821692277825.4195936-CDS-Ecto-sp9_F_contig1076:15997..16182Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1076 15998..16182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1076.661.1prot_Ecto-sp9_F_contig1076.661.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1076 10819..16182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1076.661.1

>prot_Ecto-sp9_F_contig1076.661.1 ID=prot_Ecto-sp9_F_contig1076.661.1|Name=mRNA_Ecto-sp9_F_contig1076.661.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=358bp
MERDRPLKGKGGGKRGKGRGGGGGGGGGGRGRGGRPKSSQGRGHGHRHHA
QGDSGRRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGR
KLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSW
ARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVG
HQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCE
EEAISRRDAVSMEDMMPPSYSDEEEYGNDGSENGSENGSSEGVTEREIAE
ERAEEKESWTGGGDGGKKNGEQCPADEEENVSVAASDSRGAAVAAVDGGD
AVEQVPR*
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mRNA from alignment at Ecto-sp9_F_contig1076:10790..16732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1076.661.1 ID=mRNA_Ecto-sp9_F_contig1076.661.1|Name=mRNA_Ecto-sp9_F_contig1076.661.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5943bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:10790..16732+ (Ectocarpus species9 EcSCA_722f female)
GCACAGGGCGTGAGAGCAGCACCGCTAGCATGGAGCGTGACAGACCACTG
AAAGGAAAGGGCGGAGGGAAGAGAGGTAAAGGTAGAGGCGGCGGCGGTGG
CGGCGGCGGTGGCGGCCGCGGCAGGGGCGGTAGGCCAAAGTCGTCACAAG
GCAGGGGTCACGGCCACCGACATCATGCTCAAGGCGACAGCGGGCGGAGG
AACGGAGGAGCAGCACGGGAGATGATCGATCGCGAGAGGGACGAGTCGGG
GGAATTGGCCCAGTCCATCACTGTCAGCCTCCGCATGTGGGACTTCGAGC
AGTGTGACGTGAAGAAGTGCACGGGTCGCAAGCTTTGCCGGCTCGGTGAG
AACAGCGGCGGCACAATGGTGGTATATACAGCAGTAGTACTGTTTACGTA
AGTGTGGTTTTGGAGGTCGTGGATGGTCTTGTTCTTCCCGCCAGCAACTG
CTTGCTTCGGCGGCGTGATCGTATGGTGTAGCGCCTATGGTGCTGGCACA
GCAGTAGTTATTTGTGTCCATGCAGAGGCCTCACCTTCGTCACAAACCCG
CTTGTGCATTTTGAATATACTAGGACTGCTGTTCAGACCGACCAAGTCGA
TTGCCGAGGCGCACCACACCTCCAGTACGGGAAGACCCCACAGCAATCCA
GTTACTGCTGTAGTCTAAATAGCGGCAGAGTAGACTACTGCCAAGGCCTT
CTCGTAATTGCCGTATATGGTGCGGACGTTTTTGCCTGTGTGTCGTCGTG
CCCTTCACAGCAATATCGGGCGCTAGAGAGTTCGTTTGAACCGTTAGCGG
GTCTACAAGCTCGGCGAGCTATTTAGCTGCTGTACGTAGCGATGCAGCAG
GAACTGGTGTGTGTAGACTCCCTTATGTGTACACGAACAGGTGGCGGAAG
CGCGTACTCTGTAGAGTCAAAGCAGCTTGTAACTCTGCCGAGCAAACGTG
ACGCGTTATCCCAACCATGCGTTACCCACCTGCTGTGGTTCTCACACTCT
TGCTAATGCTTGCTGACTCGCCCCCCCCCCGTTCCCAGGACTCGTGCGGG
AAATGGAGCTTGGCGCGCCGTTCTCGGGACTGGTGCTCAGCCCCAACGGC
GAACTAACGGTGTCGCCCGCCGACAGGGTAAGCTCGGGGAGGGGGGAGGA
GGGGTGGGGGCGGAATGTATTTCACGATCAAGCAGGTGTTACTCCGTAGC
AATCAGTGTCTGGCCTACTTGCCGTGCTGAAGGGCGCGCTCTGCGCGTGG
GACACGCTCGCAACGCCTTGTAACCCGTGTGTGCTCTCGACCTTTGTAGC
ACCGTAGAACCTGTGCCCCTCTTGAAGCCGGAATTACGATTGCGGAGTGG
CAGCAGGCTTGAGGACGTTTTCCATGTCACTGAATTCCAGGCAACGCCAA
TCCATTCCCATATTCTGGTGGTGTTTTGCAACGCTTGTGTCCTGGGTGTC
GCCGAACGTACACACTTACTACCACGGTACTTCTGTTCGTTTTGCTGATG
CTTCCCACGTAGAAGCCTCTCTTGCTTGATCTTGCGGATTGATGATGCTT
GTGGTTGCTTTCCGTCTGTTTCACCCCCGCACCTCCCTAGCTTCGCTAAT
TTGTAGGTATCTTGCTTCTTCTTAATCACTTTGAATGTCGTCGCCCTGTC
CCTCTCCCTCACATGTAATCCCCCTCTCACGACCCGCCACAGGAGGTCGT
TGAGACTCTGGGCATGTCGGTAATAGACTGCTCGTGGGCCCGACTCGACG
AGATACCTTTCCACCAGGTACGTGTCGCCCGCAAAAGACACCACTACCGT
GGCTTCGTGTCCGCCCCTGCTCCCGGCGATGTGTTTAGCTGTATTGGTAC
CTACGCGTGCTGGGCCATCTGCCCCGCGGGGAACAGCAAGAGGGGTGCAG
CCTTTACCTATACATACCGCGATCATGACCATCGTCTCTCGGAGGGATCG
GGTGCCCTGCATCCCCCCCCTCCATTCCCGACATTTATCATCCATCCAGA
TGACGGTAGCCGTCGTTCATCCCAACGATATGGATACCTACGCTCCAGTA
TGCTGCTGCTCCTCCGTTCACGTCCAGCGATCTAGCGTGCGGCCTTCTGA
ACCGGACTGCGAGCTGGAGAACAAATCGCTTCGCTCGAGAACACAGCAGC
AGTAGAGTAGCGAGCGTTAAATGCGGAGGATTTTGCAGGTCGTGTGTGGT
CTCTTCTCTCCTTTCGTTGTTCCTCGTCCGAATTTCTTCGCTCGCGTTTT
TGCTGCTCCGACCTTGCCTTCAGATGCGGAGAGGCCACCACCGCCTGCTC
CCTTTCCTCGTCGCGGCAAACCCGGTCAACTACGGGAAACCCATGAAGCT
CACGTGCGCGGAGGCAATAGCGGCCACTCTGTACATCGTGGGGCACCAGG
TATGGTGGGAACTTGTTTGCTCAGTCATGAACTCTGAGATCGTGATTTGT
TGTGTTTTTTTTGTTTTGAATTGAACCGGACTGGAAGACCAATCACAATC
GTATCCCTTGGCCGAAGGTGATGCGGTGACGTACTGCTGTCATGATTGGC
CCACGTTTTCGCGTCCTTGTTGCACGGTTGGACGTCCTCTCGACATGCGG
AGACGTACGTCAGTTGGTGCCTGGTATACTTTGCCAAATGGAAGAAAATA
CGAATTCAGATGACGGTCGGAACGCATATGTACAAGATGAGATGAGGACA
TACCAGAATACACACGAGACTATCAGATAAGAGAACGGTTATTCTAGATT
GCACTATTTAGGCGAGCACGGCAGAAGGAAAGTGCAGACACCTTGAGAAA
ACCTCTCTTGTTGTATGGCCTTTCTCGTGTGTGACCCAGGCTGGCGCGTG
CAAAACCCGTACCGGAACAATAGACGTCCTGAAATGAAGGGGATGACGCA
CACGCATGCGTGTCTCTGGAAGGATGCGAACAGTACGGCAACGCTACGGA
GGAAGGAGCGTGTGTTGCTTGCACGCACAACAGCGTATAAACATGCCCAT
GCAAGAGTTTTGTTTTTATCACTTGGCACAATGATGAACCCGCAGGGTGG
AAAGAGATGCAACGAAAGCACTCAACGTTACGTGGCCCGAAACAGTGCAA
ACGTGAGGCTTTCGAACGAGTGCTTGGGGGGGGCATACCATGAGATTCGG
GATGACCACCGACCGCACAGACGGACGACCGTCTTCCTCAATTTTCTCGG
TTTCATCTCTTTCGGCACAAACACACTTGAGGCAACCCATCACCATCACA
CCCTGACTATCAACACTTCCCCCCCCGAAAGCGCATGAGAGTCTCTCCCG
CCCTTCTTTTTATGAGCGGTTACTTGGTTTTTTTTTTTCTTGCCATGTGT
TGTTGACACAAACGTCCCGTGCGAAGCTGTCGCGACCCGTGCGCTCACTC
CGACTCTTACGGCTCAAGAATAGACGTGTGTCTTCTTGAATCCTTGCGAA
CACGCTTCTAGGTCTTTCTTTTGTTTTGTTGTGTTTGGCTCCTCGCACGG
GTGCCTTCTTGAATCCTTGCGAACACGCTTCTAAGTGTATGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTGTGGCTTCTCGCGC
TTAGGACGAGGCCGTGAAGGTGATGGACCAGTTTGGGTGGGGGGCGGAGT
TCCTGCGCGTGAACGAGGATGTCCTGGAGACCTACGCGGCGTGCGCGGAC
GGGGCCGAGGTGGTCAAGGCCCAAGTGAGTGTGTGTGACGGCGGCGGGAT
TATTTGCCCGGCGGCGTTTTTTTGTGTTTCCACTTCGCCGGATCGACCTG
CGGGGTAATACTATTAATAGGAGCAACGTCGTGTTCTTGGTCCCTTTACG
TCAGTGTTTTTTTTTTTTCAGTAGATGCTTGGTTTTCGAATCTGATCGTT
TCGTACTTAAGGAGCAGCGCAACAGAGGTGTACTGGTACGGTTTTTTCTT
TTTTTTCGTTCAGCCCCTCTGTGCTGTGTGGTCAGGTAGTGTACCGCCTG
ACGCGCTTCTACCAATGTTGGGCCTTGTGGGACTCTGTTCTTCTGGTGTT
GTGTTTTTTTGGCGGTCTGTGTTGTTTGTTGTTGGCATGATTCAAAAGAC
AACAACATGATCCGATCTGCTGCGTGAGGGAGATTTTTTTTGTAACATGT
GTCATTCGTATTTTTGTTCTCGCTGTACCTTGCTGCCCCTCCCCCCCATA
CAACGCACATCCCTTGCATCGTTCATCCCCCACCCCCATCTACCTTTCGT
GGTGTCAGTTTTTTGTGTTTGTGCGATATCCTTGCTGCTGTTGTCTACTT
TTTAAACAACACTGTTCCACCTCCCACCCAAGGAACACAGAAAACAACGC
ACCCCGAATCCCGTCGTTTCTTTGCCTTGGTTTCGTTTTTTTCAAAAAGG
CGGCGTTTTTGGCACGATGCGAGGAAGAGGCCATCTCCCGCCGCGACGCC
GTCTCGATGGAGGACATGATGCCTCCCTCGTACTCCGACGAAGAGGAGTA
CGGCAACGACGGCTCTGAGAACGGTTCCGAGAACGGTTCTTCTGAAGGCG
TTACGGAGAGAGGCAAGTTCTGCGACGCTCTGTTATTGCCGCGGCAGTAT
TAGTCGCATCTATTTTTTTGTTTTTTCAGCCCTTGCGGCTGCATAGTCAC
TGCAGATGTGAAGACCGGACAGCAGTGGAGGCCCGCACGAGAGACAGAGG
GTCCAACGGCAACTAACCCACGTTTTTTGTGTGGCACGTGTGCGAGGCGT
GCAGGACGATTATGTGTCAAGTTTTCTCAACCCGGGGCGAAGTGTTTCCG
AGGCCCACGTAAAGAAACAATTTGTGTGCAGCGTTGGTCAGAGTAGCGCG
AGAACGGAAGGGCGGCAGGGCATCGAATGGATGGACGGGTGGAGGCGATT
TAGCGGCTGGTCGCCATTGCGAGAACCCGTGTATACAACACGAAGTAGGG
GGAACAGTCACGATCGATTTCTGCTATTTAGTCGCTGGGTACCCCGCCCC
CGTCTGCTTCTATCCTACAAGCAAGACTGCCGTTTTCGGTTCTCTTCTCA
ACTTCTCAAGGAGAAGGAAGGCGCCGACTGGCCCGACGGGGGGCCCGGCA
AGAGAAAAGACAAACTCAACAAATGTAACCCCCGTCACTCACCTCTGCTC
GCCCCGCCATATTCCGCCGCGTCTTCCCAAAATATTTATTTGGCTGAATT
TCACGCAGAAATTGCCGAAGAGCGCGCGGAGGAGAAGGAGAGCTGGACCG
GTGGCGGTGACGGCGGAAAGAAAAACGGCGAGCAGTGCCCGGCGGACGAG
GAGGAGAATGTCTCTGTTGCTGCTTCAGACAGCCGAGGGGCGGCGGTGGC
GGCAGTGGATGGAGGAGATGCTGTCGAGCAAGTACCCCGATAGCCATGAC
AGCTAGCCGTCAGTGGGCGATAGAGATGTAGGTCGCGAAAAGCTCATGTA
CCAATCGTGATCATCTTCAGAGTGAACCAACCGTAAGTACCGTAGAAGCA
AAGCACCTCGGTGGCTGAAGAGTGCTGCGATGTGATCGGTACTCACGTAT
GTAGATTTCGGATGGCTTCGGGATTTTCGGAGATTGCAATTGTTGTTGTT
GTACATAGCGGGGTCTTGAAGGGTGTTTTCGAGCGTGTAAATCTCTTGTT
TGGATTTTTCTCTAGCGGCCTGGCAATGATAACGAACAGATTGGATTGTG
AACTTTTTTTGGGGGGGGACTCCACTGTTCGCCCTTGACGAATGGAAAGA
CACCAGTCTTACCTAGCCAACATGACACACATCCGCGGCGTCCCCGACGC
GGGCTTGTGTACTGTGTTTCTTCGTCTGATGCGGGTGTGTGCTCTGTTAG
CACTCGAACGGTCTCAGTCACGACCCAAGAAGTGGGGGTACCCTTGCCTT
CCTTTACGTTGTTATTCACCACAATCAGTCTCCACCTCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1076:10790..16732+

>mRNA_Ecto-sp9_F_contig1076.661.1 ID=mRNA_Ecto-sp9_F_contig1076.661.1|Name=mRNA_Ecto-sp9_F_contig1076.661.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2148bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1076:10790..16732+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGCGTGACAGACCACTGAAAGGAAAGGGCGGAGGGAAGAGAGGTAA
AGGTAGAGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCCGCGGCAGGGGCG
GTAGGCCAAAGTCGTCACAAGGCAGGGGTCACGGCCACCGACATCATGCT
CAAGGCGACAGCGGGCGGAGGAACGGAGGAGCAGCACGGGAGATGATCGA
TCGCGAGAGGGACGAGTCGGGGGAATTGGCCCAGTCCATCACTGTCAGCC
TCCGCATGTGGGACTTCGAGCAGTGTGACGTGAAGAAGTGCACGGGTCGC
AAGCTTTGCCGGCTCGATGGAGCGTGACAGACCACTGAAAGGAAAGGGCG
GAGGGAAGAGAGGTAAAGGTAGAGGCGGCGGCGGTGGCGGCGGCGGTGGC
GGCCGCGGCAGGGGCGGTAGGCCAAAGTCGTCACAAGGCAGGGGTCACGG
CCACCGACATCATGCTCAAGGCGACAGCGGGCGGAGGAACGGAGGAGCAG
CACGGGAGATGATCGATCGCGAGAGGGACGAGTCGGGGGAATTGGCCCAG
TCCATCACTGTCAGCCTCCGCATGTGGGACTTCGAGCAGTGTGACGTGAA
GAAGTGCACGGGTCGCAAGCTTTGCCGGCTCGGACTCGTGCGGGAAATGG
AGCTTGGCGCGCCGTTCTCGGGACTGGTGCTCAGCCCCAACGGCGAACTA
ACGGTGTCGCCCGCCGACAGGGACTCGTGCGGGAAATGGAGCTTGGCGCG
CCGTTCTCGGGACTGGTGCTCAGCCCCAACGGCGAACTAACGGTGTCGCC
CGCCGACAGGGAGGTCGTTGAGACTCTGGGCATGTCGGTAATAGACTGCT
CGTGGGCCCGACTCGACGAGATACCTTTCCACCAGGAGGTCGTTGAGACT
CTGGGCATGTCGGTAATAGACTGCTCGTGGGCCCGACTCGACGAGATACC
TTTCCACCAGATGCGGAGAGGCCACCACCGCCTGCTCCCTTTCCTCGTCG
CGGCAAACCCGGTCAACTACGGGAAACCCATGAAGCTCACGTGCGCGGAG
GCAATAGCGGCCACTCTGTACATCGTGGGGCACCAGATGCGGAGAGGCCA
CCACCGCCTGCTCCCTTTCCTCGTCGCGGCAAACCCGGTCAACTACGGGA
AACCCATGAAGCTCACGTGCGCGGAGGCAATAGCGGCCACTCTGTACATC
GTGGGGCACCAGGACGAGGCCGTGAAGGTGATGGACCAGTTTGGGTGGGG
GGCGGAGTTCCTGCGCGTGAACGAGGATGTCCTGGAGACCTACGCGGCGT
GCGCGGACGGGGCCGAGGTGGTCAAGGCCCAAGACGAGGCCGTGAAGGTG
ATGGACCAGTTTGGGTGGGGGGCGGAGTTCCTGCGCGTGAACGAGGATGT
CCTGGAGACCTACGCGGCGTGCGCGGACGGGGCCGAGGTGGTCAAGGCCC
AAGCGGCGTTTTTGGCACGATGCGAGGAAGAGGCCATCTCCCGCCGCGAC
GCCGTCTCGATGGAGGACATGATGCCTCCCTCGTACTCCGACGAAGAGGA
GTACGGCAACGACGGCTCTGAGAACGGTTCCGAGAACGGTTCTTCTGAAG
GCGTTACGGAGAGAGGCGGCGTTTTTGGCACGATGCGAGGAAGAGGCCAT
CTCCCGCCGCGACGCCGTCTCGATGGAGGACATGATGCCTCCCTCGTACT
CCGACGAAGAGGAGTACGGCAACGACGGCTCTGAGAACGGTTCCGAGAAC
GGTTCTTCTGAAGGCGTTACGGAGAGAGAAATTGCCGAAGAGCGCGCGGA
GGAGAAGGAGAGCTGGACCGGTGGCGGTGACGGCGGAAAGAAAAACGGCG
AGCAGTGCCCGGCGGACGAGGAGGAGAATGTCTCTGTTGCTGCTTCAGAC
AGCCGAGGGGCGGCGGTGGCGGCAGTGGATGGAGGAGATGCTGTCGAGCA
AGTACCCCGATAGAAATTGCCGAAGAGCGCGCGGAGGAGAAGGAGAGCTG
GACCGGTGGCGGTGACGGCGGAAAGAAAAACGGCGAGCAGTGCCCGGCGG
ACGAGGAGGAGAATGTCTCTGTTGCTGCTTCAGACAGCCGAGGGGCGGCG
GTGGCGGCAGTGGATGGAGGAGATGCTGTCGAGCAAGTACCCCGATAG
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