mRNA_Ecto-sp9_F_contig10757.659.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10757.659.1
Unique NamemRNA_Ecto-sp9_F_contig10757.659.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10757.659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.020e-17
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  109 MVPHAGAQGSEQEDQGGVERGEFSVRRRLRRRPAWNTESGARSFSACSSSVHLEE 273
            MVPHAGAQGSEQEDQGGVER EFSVRR LRRRPAW+ ESG  SFS   SSVHLEE
Sbjct:   97 MVPHAGAQGSEQEDQGGVERVEFSVRR-LRRRPAWDAESGGPSFSTSRSSVHLEE 150
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10757.659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC70_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.140e-17
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  109 MVPHAGAQGSEQEDQGGVERGEFSVRRRLRRRPAWNTESGARSFSACSSSVHLEE 273
            MVPHAGAQGSEQEDQGGVER EFSVRR LR RPAW+ ESG  SFSA  SSVHLEE
Sbjct:    1 MVPHAGAQGSEQEDQGGVERVEFSVRR-LRPRPAWDAESGGPSFSASRSSVHLEE 54
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10757.659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 2 
Query:   74 INLKHHWETWAAWSRMRAHKVRSKRIRAEWSVENSV 181
            I+ KHHWETWAAWSRMRAHKVRS  IRAE SVENSV
Sbjct:   14 IHPKHHWETWAAWSRMRAHKVRSNGIRAERSVENSV 49
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10757.659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R9_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 3.550e-5
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:  109 MVPHAGAQGSEQEDQGGVERGEFS 180
            MVPHAGAQGSEQEDQGGVER EFS
Sbjct:    1 MVPHAGAQGSEQEDQGGVERVEFS 24
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10757.659.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.020e-1783.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.140e-1783.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.050e-1086.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.550e-595.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10757contigEcto-sp9_F_contig10757:2879..3864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928295.223607-CDS-Ecto-sp9_F_contig10757:2878..30791622928295.223607-CDS-Ecto-sp9_F_contig10757:2878..3079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10757 2879..3079 -
1692277825.2534723-CDS-Ecto-sp9_F_contig10757:2878..30791692277825.2534723-CDS-Ecto-sp9_F_contig10757:2878..3079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10757 2879..3079 -
1622928295.23824-CDS-Ecto-sp9_F_contig10757:3792..38641622928295.23824-CDS-Ecto-sp9_F_contig10757:3792..3864Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10757 3793..3864 -
1692277825.267779-CDS-Ecto-sp9_F_contig10757:3792..38641692277825.267779-CDS-Ecto-sp9_F_contig10757:3792..3864Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10757 3793..3864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10757.659.1prot_Ecto-sp9_F_contig10757.659.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10757 2879..3864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10757.659.1

>prot_Ecto-sp9_F_contig10757.659.1 ID=prot_Ecto-sp9_F_contig10757.659.1|Name=mRNA_Ecto-sp9_F_contig10757.659.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
MQRAADHEEAGDLLEQAEEHLRNDDQSQTSLGNVGSMVPHAGAQGSEQED
QGGVERGEFSVRRRLRRRPAWNTESGARSFSACSSSVHLEE
back to top

mRNA from alignment at Ecto-sp9_F_contig10757:2879..3864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10757.659.1 ID=mRNA_Ecto-sp9_F_contig10757.659.1|Name=mRNA_Ecto-sp9_F_contig10757.659.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=986bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10757:2879..3864- (Ectocarpus species9 EcSCA_722f female)
ATGCAGAGGGCGGCCGACCACGAAGAGGCAGGAGATCTACTGGAGCAAGC
CGAGGAACATCTCCGAAACGATGTAAGCCTAACGAGTTTTCGTTCGTGGT
GTCTCGTGATGCAGCTCTCGCTCTCCACCCACCTCTAGATACACCTCATG
CGGGTGACCTCGCATGTTCTCCAACAGCAGCTTGGATGTATAGGATCTAA
AGGGGTTTGCTCGCTGCCGTAGTCATATGAACGTTGAAGGCTCAGCACAT
GTCGACAATAGCAGCTCTTCTCTACTACCCTCGCCCCTGTGCTGCCTGTG
CTTGAGCTCTTGACCAACAACATCTGCTACATACGTAATGTAGAGATGAC
ACCATATGGATCAGCTCTATATGCAGGCCCTGTATGGGGCAAGCGTTTGT
CCTCGTTGCCCCGTTGCCCCGTTGCCCCTGTTCTCAACGTCTGCTCTCGA
CATGTATGTCTGCTCTCGATATGTATCTGTGCGTGAACACTTGAAAGTCT
ATCCTTCCCCCGTGAGAAGCGCTTATTCGAACAAGTCAACACACAGGGGA
GAATGTCTGCATATGCCTTATTATTCGTGCACAGCAAGCGGTACTTTCGA
GCCAGTAGTTTCAGCCCCCCGCCACCTGACGGAGGTTTCCAAGAAGGCAT
GAGTTGAGCCCCTTATTGTCGTCGCGTTGGGTCCTCTCTCCACCACCACG
GTCTCACGTGAGTGCATCGATCTGATGGCACGTGCTTGGGCTTTCCCATG
TCCCCACCGTTCATTCTCCTGCATTTCGTTTCTAGGATCAATCTCAAACA
TCATTGGGAAACGTGGGCAGCATGGTCCCGCATGCGGGCGCACAAGGTTC
GGAGCAAGAGGATCAGGGCGGAGTGGAGCGTGGAGAATTCAGTGTACGTC
GACGACTGCGTCGACGACCAGCATGGAACACGGAATCTGGTGCTCGTTCT
TTCTCGGCCTGCAGCTCTTCAGTCCATCTGGAGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10757:2879..3864-

>mRNA_Ecto-sp9_F_contig10757.659.1 ID=mRNA_Ecto-sp9_F_contig10757.659.1|Name=mRNA_Ecto-sp9_F_contig10757.659.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10757:2879..3864- (Ectocarpus species9 EcSCA_722f female)
ATGCAGAGGGCGGCCGACCACGAAGAGGCAGGAGATCTACTGGAGCAAGC
CGAGGAACATCTCCGAAACGATATGCAGAGGGCGGCCGACCACGAAGAGG
CAGGAGATCTACTGGAGCAAGCCGAGGAACATCTCCGAAACGATGATCAA
TCTCAAACATCATTGGGAAACGTGGGCAGCATGGTCCCGCATGCGGGCGC
ACAAGGTTCGGAGCAAGAGGATCAGGGCGGAGTGGAGCGTGGAGAATTCA
GTGTACGTCGACGACTGCGTCGACGACCAGCATGGAACACGGAATCTGGT
GCTCGTTCTTTCTCGGCCTGCAGCTCTTCAGTCCATCTGGAGGAGGATCA
ATCTCAAACATCATTGGGAAACGTGGGCAGCATGGTCCCGCATGCGGGCG
CACAAGGTTCGGAGCAAGAGGATCAGGGCGGAGTGGAGCGTGGAGAATTC
AGTGTACGTCGACGACTGCGTCGACGACCAGCATGGAACACGGAATCTGG
TGCTCGTTCTTTCTCGGCCTGCAGCTCTTCAGTCCATCTGGAGGAG
back to top