mRNA_Ecto-sp9_F_contig10757.658.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: CxC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 1.250e-133 Identity = 233/381 (61.15%), Postives = 238/381 (62.47%), Query Frame = 1
Query: 1 GSLWCPCKNRTRVRTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIG------------------------------------------------------------------------------------------------------------------EWAHVKYDDKGGSKMFQCKANNGNPCGDSKSRRKTGRCVHAAIVAVYIYHRDKIGLGGGVDLEL 801
GSLWCPCKNRTRVRTGPV VLDRSTQAKTRHV TSVFEFPA SPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC +ATGVTD LPARCPHAEVVLEAE SSTPM KADP+FSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLG+TRYFGIKDGHEN+RT IG EWAHVKYDDKGGSKMFQCK KSRRKTGRC HAAIVA+YIYHRDKIGLGGGVDLEL
Sbjct: 71 GSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC----------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIKAPGLSEPSLPRLSTKPVTSLHTPNTFTLFRKKRKIIDNARNVCRCATVRCRPHAPVSLLRCRCSGAAVAGPSTTKLDPLRFVHALVAVLPSRFLAFSLVALRRGEEGVEWAHVKYDDKGGSKMFQCKG-----WAKGKSRRKTGRCFHAAIVAIYIYHRDKIGLGGGVDLEL 436
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 362 bits (928), Expect = 6.730e-117 Identity = 188/208 (90.38%), Postives = 195/208 (93.75%), Query Frame = 1
Query: 43 TGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCK 666
TGPVPVLDRSTQAKTRHV SVFEFPARSPPVVTAATTTLSATPTSGTG T+SVCTSVSLNRVAVIKAGNKYMCSR++CRRV N+QTSAAA GVT S LPARCPHAEVVLEAERSSTPM KADPLFSA EFR+ALTTVPPGTFN+STTRAMHTRADQAAQ GVPVLVGLG+TR F IKDGHENNRT IGEWAHVKYDDKGGSKMFQCK
Sbjct: 574 TGPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 781
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 308 bits (788), Expect = 7.100e-99 Identity = 160/223 (71.75%), Postives = 181/223 (81.17%), Query Frame = 1
Query: 1 GSLWCPCKNRTRVRTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTT-VPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCK 666
G WCPC +R RVR GPVP L+RS AK+R TS+FEFPAR+ P +T A TT SATPT G G TYSVCTSV L RVAVIK G++++CSR DCRRV+N QTSAAATG TDSALPA C HAEVVL+AERSS PM ADPLFSAEEFR ALTT VP G F+E TTRAMH RADQAA++GVPVLVGLG+T+YFGI DG +NNR +G WAHVKYDD+ GSK+FQCK
Sbjct: 284 GKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCK 506
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 301 bits (771), Expect = 1.660e-95 Identity = 166/268 (61.94%), Postives = 198/268 (73.88%), Query Frame = 1
Query: 1 GSLWCPCKNRTRV-RTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCKANNGNPCGDSKSRRKTGRCVHAAIVAVYIYHRDKIGLGGGVDLEL 801
G WCPC R R+ V V+DRS A+ R T V+EFP + TAATT S TP SG GTTYSVCTS S NRVAVIKAG++++CSR DCRR+E L S+AATG T SALP+RC HAEVV+EAER+S PM KAD L SA +F+ AL VP GTFN T +M RADQAA+EG+P+LV +GNT+YF ++DG + NRT IGEW HVKYD +G SK+FQCKA+NG+PC DS SR+ TGRCVHAAIVAVYIY R K G+ G +LEL
Sbjct: 315 GREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTSSP-TAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGL--SSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRG-SKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGE-ELEL 577
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: CxC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 293 bits (750), Expect = 3.400e-91 Identity = 161/268 (60.07%), Postives = 195/268 (72.76%), Query Frame = 1
Query: 1 GSLWCPCKNRTRV-RTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCKANNGNPCGDSKSRRKTGRCVHAAIVAVYIYHRDKIGLGGGVDLEL 801
G WCPC R R+ V V+DRS A+ R T V+EFP + TAATT S TP SG GTTYSVCTS NRVAVIKAG +++CSR DCRR+E L S+AATG T SALP+RC HAEVV+EAE++S PM KAD L SA +F AL VP GTFN+ T +M RADQAA+EG+P+LV +GNT+YF ++DG + NRT IGEW HVKYD +G SK+FQCKA++G+PC D SR+ TGRC+HAAIVAVYIY R K G+ G +LEL
Sbjct: 231 GREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTSSP-TAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGL--SSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRG-SKVFQCKASDGSPCSDGASRKSTGRCIHAAIVAVYIYDRYKSGVAGE-ELEL 493
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.600e-67 Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 1
Query: 310 AATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCK 666
AATGVT S LPARCP EVVLE ERSSTPM KADPLFSA EFR+ALTTVPPGTFNESTTRAMHTRADQAA+EGVPVLVGLG+TR FGIKDGHENNRT IGEWAHVKYDDKGGSKMFQCK
Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 128
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 194 bits (493), Expect = 7.660e-58 Identity = 108/220 (49.09%), Postives = 143/220 (65.00%), Query Frame = 1
Query: 13 CPC-KNRTRVRTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLF-SAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCK 666
CPC K + R GP +LDRSTQA+TR+V TSVFE P+ TA +T A PT GTTYS CTSV NRV+V+++ +YMCSR +C+ +E L AAA G T+ L C HA+VV++A+ SS PM A L SAEEF +AL VP GTFN+ T +A+ R +A + G+PVLV LG+T++F ++DG NR +G WAHVK ++ GG +CK
Sbjct: 25 CPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADSTPTPA-PTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCK 243
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 173 bits (439), Expect = 9.680e-50 Identity = 87/136 (63.97%), Postives = 105/136 (77.21%), Query Frame = 1
Query: 394 PMLKADPLFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDKGGSKMFQCKANNGNPCGDSKSRRKTGRCVHAAIVAVYIYHRDKIGLGGGVDLEL 801
PM KAD L SA +F+ AL VP GTFN T +M RADQAA+EG+P+LV +GNT+YF ++DG + NRT IGEW HVKYD +G SK+FQCKA+NG+PC DS SR+ TGRCVHAAIVAVYIY R K G+ G +LEL
Sbjct: 2 PMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRG-SKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGE-ELEL 135
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: CxC4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI) HSP 1 Score: 145 bits (365), Expect = 5.550e-36 Identity = 82/170 (48.24%), Postives = 107/170 (62.94%), Query Frame = 1
Query: 181 GTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCRRVENLQTSAAATGVTDSALPARCPHAEVVLEAERSSTPMLKADPLFSAE-EFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGNTRYFGIKDGHENNRTDIGEWAHVKYDDK---GGSKMFQCKANNG 678
G+ TT+SVCT+++ RV+V+KA N +MCSR +CR+VE L+ +A G T+SAL RC HA+VV +AE SS + A + + EF AL +VPPGTFNE RAM R +A +EGVPVLV L T +F ++DG R IG W HVK G MFQCK +G
Sbjct: 294 GSSTTFSVCTALNQLRVSVVKANNVFMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLAETAWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCKDTDG 463
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H0_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 6.930e-17 Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 13 CPC-KNRTRVRTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDCR 282
CPC K + R GP +LDRSTQA+TR+V TSVFE P+ TA +T A PT GTTYS CTSV NRV+V+++ +YMCSR +C+
Sbjct: 11 CPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADSTPTPA-PTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECK 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10757.658.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10757.658.1 >prot_Ecto-sp9_F_contig10757.658.1 ID=prot_Ecto-sp9_F_contig10757.658.1|Name=mRNA_Ecto-sp9_F_contig10757.658.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=267bp GSLWCPCKNRTRVRTGPVPVLDRSTQAKTRHVLTSVFEFPARSPPVVTAAback to top mRNA from alignment at Ecto-sp9_F_contig10757:151..2141- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10757.658.1 ID=mRNA_Ecto-sp9_F_contig10757.658.1|Name=mRNA_Ecto-sp9_F_contig10757.658.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1991bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10757:151..2141- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10757:151..2141- >mRNA_Ecto-sp9_F_contig10757.658.1 ID=mRNA_Ecto-sp9_F_contig10757.658.1|Name=mRNA_Ecto-sp9_F_contig10757.658.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10757:151..2141- (Ectocarpus species9 EcSCA_722f female)back to top |