mRNA_Ecto-sp9_F_contig10756.657.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Alpha-type (protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH4_ECTSI) HSP 1 Score: 355 bits (912), Expect = 1.130e-108 Identity = 203/232 (87.50%), Postives = 207/232 (89.22%), Query Frame = 3
Query: 3 HASVHQPSAGTAADGATSYARADRLMAGGTQLSIGGGGAGAFAAGG----SAVDYGHGAEEYLRGGGGWAXXXXXXXXXXXXXXXSRKRGREEVFLGFAPRPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKLPGSRSPEAEAAEKAANANA----GAREWGGRGAKSRRVHNP 674
HASVHQPSAGTAADGATSYARADRLMAGGTQ+SIGG +AVDYG AEEYLRGGGGWAXXXXXXXXXXXXXXXSRKRGREEVF+GFAPRPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLL LPGSRSPEAE AEKAANA GAREWGGRGAK RR+HNP
Sbjct: 565 HASVHQPSAGTAADGATSYARADRLMAGGTQVSIGGXXXXXXXXXXXXXXNAVDYGDWAEEYLRGGGGWAXXXXXXXXXXXXXXXSRKRGREEVFVGFAPRPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLNLPGSRSPEAEVAEKAANAXXXXXXGAREWGGRGAKFRRMHNP 796
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU5_ECTSI) HSP 1 Score: 120 bits (301), Expect = 1.200e-24 Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 3
Query: 282 FAPRPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKL 563
F P P Y+QAFSHFS+ +S K LVCDLQGV+ AGV+ELTDPVIH S R+Q++GRTDLGKKGM KFF TH CNDVCRLL L
Sbjct: 624 FDPEPESYVQAFSHFSYRKSRRKMLVCDLQGVQSTSCIHEDR-AGVFELTDPVIHYRSASGRRQVYGRTDLGKKGMRKFFETHQCNDVCRLLGL 716
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT5_ECTSI) HSP 1 Score: 113 bits (283), Expect = 2.510e-22 Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 3
Query: 282 FAPRPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLL 557
FAP+ Y QAFSHFS+ ++ K LVCDL+GV P AGV+ELTDPVIH S+ R Q++G+TDLGK GM+KFF+TH CNDVCRLL
Sbjct: 806 FAPKAECYPQAFSHFSYWQTRRKMLVCDLRGVLSSSAPGEDR-AGVFELTDPVIHYRSKSGRTQVYGKTDLGKSGMNKFFKTHRCNDVCRLL 896
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RYM7_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 5.700e-17 Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 3
Query: 258 GREEVFLGFAP---RPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLK 560
G E+VF+ D QAF+HF+++ S K +VCDLQGV + V+ELTDPVIH S R+ +FGRTD G GMH F TH C D+CR L+
Sbjct: 85 GNEQVFVSSDELNITAADIPQAFTHFTYIHSRRKTMVCDLQGVL-----NTASSPPVFELTDPVIHYRSDKGRRNVFGRTDKGVAGMHAFLGTHKCTDLCRALR 183
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PI67_ALECA) HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16 Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 297 TDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKLPGSRSPEAE 590
+D QAFSHF++ ++ + LVCDLQ V D +E TDPVIH S+ RQQ+FGRTD G KG H+FF TH C+D+CR+L R EAE
Sbjct: 511 SDVPQAFSHFTYRKTQRRMLVCDLQRVL-----DENSTPPRFEFTDPVIHYRSRTGRQQVFGRTDNGTKGFHRFFETHECSDLCRMLNRRFVRQGEAE 603
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Kinase-like (protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CGS9_9FUNG) HSP 1 Score: 92.0 bits (227), Expect = 1.130e-15 Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 297 TDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIAR-QQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKLP 566
+D+ QAFSH+++ S + LVCDLQGV D V+E TDP IHS+S R ++ FGRTD GK G+ FF+TH CNDVCRLL LP
Sbjct: 570 SDFPQAFSHWTYRNSNREFLVCDLQGVL-----DTTVYPPVFEFTDPAIHSSSSKKRSERKFGRTDRGKFGIIDFFKTHQCNDVCRLLGLP 655
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Uncharacterized (protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WT72_9CNID) HSP 1 Score: 90.5 bits (223), Expect = 4.000e-15 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 3
Query: 300 DYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLL 557
D QAFSHFS RS +R+VCDLQGV D ++ELTDPVIH S R+ ++G+TD G+KG++ FF+TH CN++CR L
Sbjct: 673 DVPQAFSHFSHKRSRRRRMVCDLQGVL-----DTSQKPPMFELTDPVIHYKSSRNRENVYGKTDKGQKGINDFFQTHKCNNLCRAL 753
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Alpha-type (protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3U5_THAOC) HSP 1 Score: 87.8 bits (216), Expect = 9.200e-15 Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 3
Query: 294 PTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKL 563
P++YLQAFSHF+ + + LVCDLQGV + ELTDP IH S R+ +FGRTD G+ GM+ FF+TH CN++C+ L L
Sbjct: 306 PSEYLQAFSHFTKCFTNKRLLVCDLQGVF-----NTNTSPPTIELTDPAIHYASAKGRRAVFGRTDKGRSGMNAFFKTHRCNNICKYLHL 390
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Hypothetical (protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAB5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.400e-14 Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query: 294 PTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIH--SNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLL 557
P + QAFSH+S+ SGHK L+CDLQGV L ++ LTDPVIH S + +++++GRTD G+KGM FF +HVCN +C ++
Sbjct: 233 PDEVAQAFSHYSYQYSGHKILICDLQGVYDDQLR-------LFRLTDPVIHYYSPHKPDKKKVYGRTDRGRKGMDDFFESHVCNALCHVV 315
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEJ8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.030e-14 Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 3
Query: 291 RPTDYLQAFSHFSFVRSGHKRLVCDLQGVECPGLPDNPFCAGVYELTDPVIHSNSQIARQQMFGRTDLGKKGMHKFFRTHVCNDVCRLLKL 563
+P+DYLQAFSHF+++ + K LVCDLQGV + F EL+DP IH S R +FGRTD G+KG+ FF +H C +C++++L
Sbjct: 601 KPSDYLQAFSHFTYLFTNRKVLVCDLQGVYNTEMKPPTF-----ELSDPAIHYRSNKGRA-IFGRTDKGQKGIQLFFNSHKCTGICKIMQL 685 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10756.657.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10756.657.1 >prot_Ecto-sp9_F_contig10756.657.1 ID=prot_Ecto-sp9_F_contig10756.657.1|Name=mRNA_Ecto-sp9_F_contig10756.657.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=200bp MAGGTQLSIGGGGAGAFAAGGSAVDYGHGAEEYLRGGGGWAGGGSGGGSGback to top mRNA from alignment at Ecto-sp9_F_contig10756:1061..3951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10756.657.1 ID=mRNA_Ecto-sp9_F_contig10756.657.1|Name=mRNA_Ecto-sp9_F_contig10756.657.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2891bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10756:1061..3951- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10756:1061..3951- >mRNA_Ecto-sp9_F_contig10756.657.1 ID=mRNA_Ecto-sp9_F_contig10756.657.1|Name=mRNA_Ecto-sp9_F_contig10756.657.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10756:1061..3951- (Ectocarpus species9 EcSCA_722f female)back to top |