mRNA_Ecto-sp9_F_contig10731.643.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10731.643.1
Unique NamemRNA_Ecto-sp9_F_contig10731.643.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10731.643.1 vs.
Match: Glycosyl (transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 1.420e-145
Identity = 225/233 (96.57%), Postives = 226/233 (97.00%), Query Frame = 1 
Query:    1 IFNAVTGETTVPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQQQGPREESGGTAAVFTLLVADAKKPQPFLSALGGRQSWDPEHRVTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVTELSR 699
            +FNAVTGET VPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQ QGPREESGGTAAV TLLVADAKKPQPFLSALGGRQSWDPEHR T AAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVV  LSR
Sbjct:  105 VFNAVTGETKVPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQLQGPREESGGTAAVLTLLVADAKKPQPFLSALGGRQSWDPEHRATAAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVARLSR 337
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BLAST of mRNA_Ecto-sp9_F_contig10731.643.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 2.990e-123
Identity = 198/233 (84.98%), Postives = 206/233 (88.41%), Query Frame = 1 
Query:    1 IFNAVTGETTVPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQQQGPREESGGTAAVFTLLVADAKKPQPFLSALGGRQSWDPEHRVTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVTELSR 699
            +FNAVTGET VPDDSPPKKIE LIKPGK YPI+S+DWA+RVYAAKSARSQASKGAGPDE                GPREESGGTAAV TLLVAD K+PQPFLSALGGRQ+WDPEHR TTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGE EAWREALERGAVKLVPCS GGADERRAGELSLACAAGDASVSEFVW+PGP VAEALG ADAKRSTPSGRGAEVV+EL R
Sbjct:  100 VFNAVTGETKVPDDSPPKKIEKLIKPGKTYPIQSRDWASRVYAAKSARSQASKGAGPDE----------------GPREESGGTAAVLTLLVADTKQPQPFLSALGGRQNWDPEHRTTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEREAWREALERGAVKLVPCSFGGADERRAGELSLACAAGDASVSEFVWLPGPRVAEALGRADAKRSTPSGRGAEVVSELYR 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10731.643.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Glycosyl1.420e-14596.57transferase family 2 protein n=1 Tax=Ectocarpus si... [more]
Uncharacterized2.990e-12384.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10731contigEcto-sp9_F_contig10731:334..3276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10731.643.1prot_Ecto-sp9_F_contig10731.643.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10731 334..3276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928293.0801585-CDS-Ecto-sp9_F_contig10731:333..3961622928293.0801585-CDS-Ecto-sp9_F_contig10731:333..396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 334..396 +
1692277824.2283537-CDS-Ecto-sp9_F_contig10731:333..3961692277824.2283537-CDS-Ecto-sp9_F_contig10731:333..396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 334..396 +
1622928293.0974848-CDS-Ecto-sp9_F_contig10731:1119..12331622928293.0974848-CDS-Ecto-sp9_F_contig10731:1119..1233Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 1120..1233 +
1692277824.2483733-CDS-Ecto-sp9_F_contig10731:1119..12331692277824.2483733-CDS-Ecto-sp9_F_contig10731:1119..1233Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 1120..1233 +
1622928293.1087406-CDS-Ecto-sp9_F_contig10731:2094..24211622928293.1087406-CDS-Ecto-sp9_F_contig10731:2094..2421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 2095..2421 +
1692277824.2654126-CDS-Ecto-sp9_F_contig10731:2094..24211692277824.2654126-CDS-Ecto-sp9_F_contig10731:2094..2421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 2095..2421 +
1622928293.1215599-CDS-Ecto-sp9_F_contig10731:3078..32761622928293.1215599-CDS-Ecto-sp9_F_contig10731:3078..3276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 3079..3276 +
1692277824.2758408-CDS-Ecto-sp9_F_contig10731:3078..32761692277824.2758408-CDS-Ecto-sp9_F_contig10731:3078..3276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10731 3079..3276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10731.643.1

>prot_Ecto-sp9_F_contig10731.643.1 ID=prot_Ecto-sp9_F_contig10731.643.1|Name=mRNA_Ecto-sp9_F_contig10731.643.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=234bp
IFNAVTGETTVPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQ
ASKGAGPDEIGRAALSKRLAARQQQGPREESGGTAAVFTLLVADAKKPQP
FLSALGGRQSWDPEHRVTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGS
RGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVW
VPGPAVAEALGMADAKRSTPSGRGAEVVTELSR*
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mRNA from alignment at Ecto-sp9_F_contig10731:334..3276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10731.643.1 ID=mRNA_Ecto-sp9_F_contig10731.643.1|Name=mRNA_Ecto-sp9_F_contig10731.643.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2943bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10731:334..3276+ (Ectocarpus species9 EcSCA_722f female)
ATTTTTAACGCCGTCACGGGCGAGACGACGGTTCCGGACGATTCGCCACC
GAAGAAAATCGAGGTGGGTGTCTTTTTCAGTCGCCGCACTACTGCTGCTG
TTCTGTGACTTCTAGAAAGGTGTGGTACCCGTCTTTGGGGGTAGTTGGCT
TGCGACCACGGAAGGAGGCCGCGTGAGTTGGACCAGTGCGGGTATTAGAA
GGTACTGAGCGGAGACCGGAACGGTGTTTAATACGAAGACGACAACAACA
ACCAACAACAACAACTGTGTATCGGTCTTGCTTTGTACGAACCAATTCAG
CTACATTCTCCTTCTATAGGCCGTGCCCCAAACCATCCCCCACGCCCGGT
TTTTCAACTATCGTACGTACTACCAATGCCCCTGCCAAGTCGTCTGGAAG
CTGCTGAATGGCGCGGCCTCTCCATCTAGACGTGGCTGTGTTCCAAACGC
GTTGTCGAGCAAAGAACTTTACCCCCTCCTGCGTCTATTGTCCGCGCTAC
CATCCGTGCACATATCTCGGGTTTGCAATAGACGAGTGTTGCTGCTTGTT
TTCGGGGAATGATCTCTCCATCCATCCATCTATCTAGGTCGGCCGGTGCA
TGTTCATGGCTGCAATTGTTTCGTGGACCCAACACCACTCATCAGAATCG
TGTTCTTCTCAAGGGCTGCGTTCGTTCCATCCAAGTCCAGATCACATTAA
CCTGCCCCCCAAGACCCCACAAAGATGGTGTCATAACCACCACCACTACC
CCACCGCGCCGCTTCGCTCTTGTGGCCGTCCCTCAGACGTTGATCAAGCC
CGGGAAGGCTTACCCCATTAAGTCTCAGGACTGGGCCACACGCGTGTACG
CGGCTAAGTCGGCCAGGAGCCAGGCTTCCAAGGGGGCGGGACCGGACGAG
GTGTGGGCTGAATTGATCCGTGAACGCGGGCACGGCGGGGAAACTGATTT
GTTCTCTTCTTCTATGTTTCGCGTGTCTCGCTTTGATTTGGTAGGCCGTG
TGGTCACGGGTGCACCCGATGGTCTCCCTTTTCAACAATCTCGACACATT
TTTACGCGATTAATGTACATACCTGAACCAGAGACGGGATTCACCTCGTA
CATGGTGCACCTGGTCTGTTGAAGAAAAGCTGGAAATATCGGCGACGAAG
TTCCTCGAGGGGGGCGGGGATTGTTTGGCGGTAGTGTTGAGGCCATTGGC
CCTACCTGAAGCAGTGGAGACGAAAAAAACGCGGGGGGGGTGGGGTTACC
ATCTGCCGACTCAGCTGGCATTGAGCCAAGCGCGAATCACCGTTTGGGGG
GGGTGCGGTCTGGAGGGATACATAGGGTAGACCCAACCGACTACGGATCG
CTCCCCCCCTGACAACGATGAGGCATGTGTCGCCGCGCTACGTTGAGGCC
ACACCATGCAAAGACCGGAGGGAGGGGACGAGCAGTACTACCCTTGGTGT
GAAAACTGTGGCAGAAACGAGCACCGAATATTGACGGTGTCTCAATTTGG
TTGTCAACGTCGGTAGGGATGTAGGACCCGCAAGGTCAGTTGACAAAAGG
CAAACAAAGACGCTCCCCTGCCCCCCCCCCCCCCCCCCCCACCGTCCGGC
CGCGCGCCCCCAGCGGGGGGCGGGGGCGCCGCCCCCGGGGGCCCCGNNNN
NNNNNNTGTCTCAATTTGGGTGGCAACGTCGGGGGGGAAATAGGCCCCCC
CAGGTCAGTTGAAAAAAAGCAAACAAAACCCCCCCCCCCCCCCCCCCCCC
CCCCCCGTCAGATCGGTCGGGCCGCGCTCTCGAAGCGGTTGGCTGCGCGC
CAGCAACAGGGGCCACGGGAAGAAAGCGGAGGAACCGCTGCCGTGTTTAC
TCTCCTGGTGGCCGACGCCAAGAAGCCACAGCCGTTCCTGTCCGCTCTCG
GGGGAAGACAGAGCTGGGACCCTGAACATCGCGTGACAACGGCGGCGGCA
GGAGCGGGGGAAGCTGAGTGGGCTTGGGAAGAGGTGTTCGTCTGCGAGGA
GGACGAGGGTGCCCTGGACGGAATCTTGGGCTCGCGGGGGGAGGGGGAGG
CGTGGCGAGAGGCGCTCGAACGAGGGGCGGTCAAGCTGGTGCGTTTTGCG
ACTGGCTTGTCGGGGATGGGCGGTTGTCTTCCTCTCTCTTTGTGCTTGTC
CGTACTCTTTCCCTCGCTCTTGCTCCGTGTCGACGCATTTAGAGGTATGC
GAGAGTCTGTGGAACGAAACATCTAGATAGGCCTACAAGGTGATATCATG
AGCACACCGCAACGCCGCCCTACTGACAGTATGCAAGGTATAGTCGTGCT
GCCGGTGTAGCGGCCCATAGTGTCACAAAATGTTACAACCGCTATTGAGG
GCATCGCGGCTAAACCGGATTGGCAGTTATATACTACAGCAGTAGTTTGA
CCACCGAGGTGCGGCCGTGCCACGAGATTTTGGAACCGCTATTCAGGGCA
TCCCGCCAAACAGGGAAGGAACCGCTAAACCGGGGCCATGACCCTACCCA
AAATATCGTCCACCTTTACTCATAAACACACACACACACACACACAAACA
CAAACACACCGCCGCCCTGCTGAGAGTACAACGCAGGATACCGAAATTCG
CTACTGCTGTAGCTCATAATAAAACACACACACACACAAACACGCCGCAC
AGTCGCCCTGCTGAGAGTACAATGCAAGATACTAAAATTCGTCATTGCGG
TCACTCCTAACAAAACACACACACACACACACAACCACGCCGTAGGTACC
CTGTAGCTCCGGGGGGGCGGACGAGAGGCGAGCCGGCGAGCTGTCCCTCG
CGTGCGCCGCCGGGGACGCCTCTGTGTCTGAGTTCGTGTGGGTGCCGGGG
CCGGCGGTGGCGGAGGCCCTGGGGATGGCGGACGCGAAGCGGTCGACCCC
GTCGGGCAGGGGTGCGGAGGTCGTGACGGAGCTCTCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10731:334..3276+

>mRNA_Ecto-sp9_F_contig10731.643.1 ID=mRNA_Ecto-sp9_F_contig10731.643.1|Name=mRNA_Ecto-sp9_F_contig10731.643.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1404bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10731:334..3276+ (Ectocarpus species9 EcSCA_722f female)
ATTTTTAACGCCGTCACGGGCGAGACGACGGTTCCGGACGATTCGCCACC
GAAGAAAATCGAGATTTTTAACGCCGTCACGGGCGAGACGACGGTTCCGG
ACGATTCGCCACCGAAGAAAATCGAGACGTTGATCAAGCCCGGGAAGGCT
TACCCCATTAAGTCTCAGGACTGGGCCACACGCGTGTACGCGGCTAAGTC
GGCCAGGAGCCAGGCTTCCAAGGGGGCGGGACCGGACGAGACGTTGATCA
AGCCCGGGAAGGCTTACCCCATTAAGTCTCAGGACTGGGCCACACGCGTG
TACGCGGCTAAGTCGGCCAGGAGCCAGGCTTCCAAGGGGGCGGGACCGGA
CGAGATCGGTCGGGCCGCGCTCTCGAAGCGGTTGGCTGCGCGCCAGCAAC
AGGGGCCACGGGAAGAAAGCGGAGGAACCGCTGCCGTGTTTACTCTCCTG
GTGGCCGACGCCAAGAAGCCACAGCCGTTCCTGTCCGCTCTCGGGGGAAG
ACAGAGCTGGGACCCTGAACATCGCGTGACAACGGCGGCGGCAGGAGCGG
GGGAAGCTGAGTGGGCTTGGGAAGAGGTGTTCGTCTGCGAGGAGGACGAG
GGTGCCCTGGACGGAATCTTGGGCTCGCGGGGGGAGGGGGAGGCGTGGCG
AGAGGCGCTCGAACGAGGGGCGGTCAAGCTGATCGGTCGGGCCGCGCTCT
CGAAGCGGTTGGCTGCGCGCCAGCAACAGGGGCCACGGGAAGAAAGCGGA
GGAACCGCTGCCGTGTTTACTCTCCTGGTGGCCGACGCCAAGAAGCCACA
GCCGTTCCTGTCCGCTCTCGGGGGAAGACAGAGCTGGGACCCTGAACATC
GCGTGACAACGGCGGCGGCAGGAGCGGGGGAAGCTGAGTGGGCTTGGGAA
GAGGTGTTCGTCTGCGAGGAGGACGAGGGTGCCCTGGACGGAATCTTGGG
CTCGCGGGGGGAGGGGGAGGCGTGGCGAGAGGCGCTCGAACGAGGGGCGG
TCAAGCTGGTACCCTGTAGCTCCGGGGGGGCGGACGAGAGGCGAGCCGGC
GAGCTGTCCCTCGCGTGCGCCGCCGGGGACGCCTCTGTGTCTGAGTTCGT
GTGGGTGCCGGGGCCGGCGGTGGCGGAGGCCCTGGGGATGGCGGACGCGA
AGCGGTCGACCCCGTCGGGCAGGGGTGCGGAGGTCGTGACGGAGCTCTCC
AGGTGAGTACCCTGTAGCTCCGGGGGGGCGGACGAGAGGCGAGCCGGCGA
GCTGTCCCTCGCGTGCGCCGCCGGGGACGCCTCTGTGTCTGAGTTCGTGT
GGGTGCCGGGGCCGGCGGTGGCGGAGGCCCTGGGGATGGCGGACGCGAAG
CGGTCGACCCCGTCGGGCAGGGGTGCGGAGGTCGTGACGGAGCTCTCCAG
GTGA
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