mRNA_Ecto-sp9_F_contig10723.642.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10723.642.1
Unique NamemRNA_Ecto-sp9_F_contig10723.642.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U0_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.170e-59
Identity = 118/175 (67.43%), Postives = 125/175 (71.43%), Query Frame = 2 
Query:  224 PPVTSADNPRAGLVATACPCTTAKCTPSTEVAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTTAYTTWTTTETPPVWTWTMGPFFTGQDGTTTAAPSVYTTDRTARPPXXXXXXXXXXXXXXXXXXVTISTPDSISAXXXXXXXXXXTEGWRRSVLAFTPVTSAALPCR 748
            PP TSAD PRA LV+TACPC TAKCTPSTEVAASTARVYTA GV+ESVVL+CTWAQVT PTLVATRNTTA T+W  T T PV TWT+ PF T QDGTTT APSVYTTDRTARPP                  VT  T   IS+          TEGWRR+VLA TPVTSAALPCR
Sbjct:    2 PPRTSADKPRAALVSTACPCMTAKCTPSTEVAASTARVYTAEGVRESVVLKCTWAQVTTPTLVATRNTTACTSWRGTGTLPVRTWTIAPFLTDQDGTTTEAPSVYTTDRTARPPARPACVAECGARTS----VTTFTSGRISSTSSTGSS---TEGWRRAVLAVTPVTSAALPCR 169
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY11_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.970e-56
Identity = 142/176 (80.68%), Postives = 147/176 (83.52%), Query Frame = 2 
Query:  224 PPVTSADNPRAGLVATACPCTTAKCTPSTEVAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTTAYTTWTTTETPPVWTWTMGPFFTGQDGTTTAAPSVYTTDRTARPPXXXXXXXXXXXXXXXXXXVTISTPDSISAXXXXXXXXXXT-EGWRRSVLAFTPVTSAALPCR 748
            PP TSAD PRA LV+TACPCTTAK TPS EVAAST RVYTAAGVKESVVL CTWAQVT+PTLVA+ NTTA TTW  T T PV TW M PF TGQDGTTT AP VYTTDRTARPPXXXXXXXXXXXXXXXXX   ISTPDSI  XXXXXXXXXX  E WR++VLA TPVTSA LPCR
Sbjct:    2 PPRTSADKPRAALVSTACPCTTAKGTPSMEVAASTTRVYTAAGVKESVVLLCTWAQVTMPTLVASGNTTACTTWRETGTLPVRTWIMAPFLTGQDGTTTEAPPVYTTDRTARPPXXXXXXXXXXXXXXXXXSEAISTPDSIXXXXXXXXXXXXXXEEWRQAVLAVTPVTSAPLPCR 177
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.030e-43
Identity = 93/114 (81.58%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:  224 PPVTSADNPRAGLVATACPCTTAKCTPSTEVAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTTAYTTWTTTETPPVWTWTMGPFFTGQDGTTTAAPSVYTTDRTARPP 565
            PP TSAD PRA LV TACPCTTAK TPS EVAASTARVYTAAGVKESVVL CTWAQVT+PTLVA +NTTA TTW  T T PV TWTM PF TGQDGTT  AP VYTTDRTARPP
Sbjct:    2 PPRTSADKPRAALVPTACPCTTAKGTPSMEVAASTARVYTAAGVKESVVL-CTWAQVTMPTLVAIQNTTACTTWRGTRTLPVRTWTMAPFLTGQDGTTIEAPPVYTTDRTARPP 114
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.670e-42
Identity = 106/154 (68.83%), Postives = 113/154 (73.38%), Query Frame = 2 
Query:  299 TPSTEVAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTTAYTTWTTTETPPVWTWTMGPFFTGQDGTTTAAPSVYTTDRTARPPXXXXXXXXXXXXXXXXXXVTISTPDSIS----AXXXXXXXXXXTEGWRRSVLAFTPVTSAALPCR 748
            TPSTEVAAS A VYTAAGV+ESVVL+CTWAQVT PTLVA+ NTTA T+W  T T PV TWTM PF TGQDGTTTAAPSVYTTDRTARPP                  +T  TP  IS    +XXXXXXXXX TEGWRR+VLA TPVTSA LPCR
Sbjct:  153 TPSTEVAASMASVYTAAGVRESVVLKCTWAQVTTPTLVASGNTTACTSWRGTGTLPVRTWTMAPFLTGQDGTTTAAPSVYTTDRTARPPARPACVAECGARTLV---MTTFTPGRISTGTSSXXXXXXXXXSTEGWRRAVLAVTPVTSAPLPCR 303
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.520e-36
Identity = 89/130 (68.46%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:   83 TVDCTSTTDPAXXXXXXXXXXXXXXAKEKKKWR*CMSGRVALPTECTPPVTSADNPRAGLVATACPCTTAKCTPSTEVAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTT-AYTTWTTTETPPV 469
            T  CT TTDPAXXX              +KK R C  GRVALP E  PP T A+N +A LV T CPCTTAKCT STEVAASTAR YTAAGVKES VLECTWAQVT PTLVATRNTT A T+WT TETPPV
Sbjct:   25 TAKCTPTTDPAXXXPAAERPT-------EKKRRLCKPGRVALPAESIPPSTYAEN-KAALVPTGCPCTTAKCTQSTEVAASTARAYTAAGVKESEVLECTWAQVTTPTLVATRNTTTACTSWTATETPPV 146
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.120e-33
Identity = 85/140 (60.71%), Postives = 91/140 (65.00%), Query Frame = 2 
Query:  314 VAASTARVYTAAGVKESVVLECTWAQVTVPTLVATRNTTAYTTWTTTETPPVWTWTMGPFFTGQDGTTTAAPSVYTTDRTARPPXXXXXXXXXXXXXXXXXXVTISTPDSISAXXXXXXXXXXTEGWRRSVLAFTPVTSA 733
            VAASTARVYTAA VKES+ L+CTWAQVT+PTLVA+ NTTA TTW  T T PV TWTM  F TGQDGTTT AP VYTTDRTARPP                  VT  T   IS+          TEGW R+VLA TPVTSA
Sbjct:  104 VAASTARVYTAAEVKESMTLDCTWAQVTMPTLVASGNTTACTTWRGTGTLPVRTWTMATFLTGQDGTTTEAPPVYTTDRTARPPARPACVAECGARTS----VTTFTSGRISSTSSTSTS---TEGWWRAVLAVTPVTSA 236
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ02_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 8.840e-7
Identity = 35/58 (60.34%), Postives = 35/58 (60.34%), Query Frame = 2 
Query:    5 AGVLPTVIAAARQALPTDRPADRSKNTVDCTSTTDPAXXXXXXXXXXXXXXAKEKKKW 178
            AGVL  VI AA  ALPTD PAD SKNTVDCT TTD A              AKEKKKW
Sbjct:   37 AGVLAMVITAAGPALPTDHPADLSKNTVDCTRTTDSATTTTAAR-------AKEKKKW 87
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.530e-6
Identity = 46/84 (54.76%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:   83 TVDCT-STTDPAXXXXXXXXXXXXXXAKEKKKWR*CMSGRVALPTECTPPVTSADNPRAGLVATACPCTTAKCT-PSTEVAAST 328
            T  CT STTDPA              AK KKKWR C  GR AL T+CTP  T AD   A LVATACPC TAKCT P T+ A +T
Sbjct:  351 TTKCTRSTTDPATTTTAAR-------AKAKKKWR-CTPGRAALRTDCTPR-TYADI--AALVATACPCPTAKCTCPPTDPATTT 423
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10723.642.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized6.170e-5967.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.970e-5680.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.030e-4381.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.670e-4268.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.520e-3668.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.120e-3360.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.840e-760.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.530e-654.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10723contigEcto-sp9_F_contig10723:3..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size771
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928293.003396-CDS-Ecto-sp9_F_contig10723:2..7731622928293.003396-CDS-Ecto-sp9_F_contig10723:2..773Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10723 3..773 +
1692277824.2154703-CDS-Ecto-sp9_F_contig10723:2..7731692277824.2154703-CDS-Ecto-sp9_F_contig10723:2..773Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10723 3..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10723.642.1prot_Ecto-sp9_F_contig10723.642.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10723 3..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10723.642.1

>prot_Ecto-sp9_F_contig10723.642.1 ID=prot_Ecto-sp9_F_contig10723.642.1|Name=mRNA_Ecto-sp9_F_contig10723.642.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=257bp
HGRRPAHGDRRRSSSPTHGPARGPFEEYGGLHLHHGPGRHNHHHHHHHGG
GESEGEEEMAMMHVGPRGPPHGMHPPRHLRGQPKGGPRRHGMPMHDRQMH
PFHGGRRFHGEGVHSSGGEGERGPGMHMGPGHRAHPRRHPEHHGIHHLDN
DGDTAGMDMDHGPLLHRAGRHHHRSPVGLHHRPHGPPPGPPPGPPGMRGG
MRCEDFGDDFHPRQHQRHEQHQQHQQQHGRMAAVRARVHPCHKRRAPLQM
MPMQAY*
back to top

mRNA from alignment at Ecto-sp9_F_contig10723:3..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10723.642.1 ID=mRNA_Ecto-sp9_F_contig10723.642.1|Name=mRNA_Ecto-sp9_F_contig10723.642.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10723:3..773+ (Ectocarpus species9 EcSCA_722f female)
CACGGCAGGCGTCCTGCCCACGGTGATCGCCGCCGCTCGTCAAGCCCTAC
CCACGGACCGGCCCGCGGACCGTTCGAAGAATACGGTGGACTGCACCTCC
ACCACGGACCCGGCCGCCACAACCACCACCACCACCACCACCACGGGGGC
GGCGAGAGCGAAGGAGAAGAAGAAATGGCGATGATGCATGTCGGGCCGCG
TGGCCCTCCCCACGGAATGCACCCCCCCCGTCACCTCCGCGGACAACCCA
AGGGCGGGCCTCGTCGCCACGGCATGCCCATGCACGACCGCCAAATGCAC
CCCTTCCACGGAGGTCGCCGCTTCCACGGCGAGGGTGTACACAGCAGCGG
GGGTGAAGGAGAGCGTGGTCCTGGAATGCACATGGGCCCAGGTCACCGTG
CCCACCCTCGTCGCCACCCGGAACACCACGGCATACACCACCTGGACAAC
GACGGAGACACCGCCGGTATGGACATGGACCATGGGCCCCTTCTTCACAG
GGCAGGACGGCACCACCACCGCAGCCCCGTCGGTCTACACCACCGACCGC
ACGGCCCGCCCCCCGGCCCGCCCCCCGGCCCGCCAGGCATGCGGGGCGGA
ATGCGGTGCGAGGACTTCGGTGACGATTTCCACCCCCGACAGCATCAGCG
CCATGAGCAGCACCAGCAGCACCAGCAGCAGCACGGAAGGATGGCGGCGG
TCCGTGCTCGCGTTCACCCCTGTCACAAGCGCCGCGCTCCCTTGCAGATG
ATGCCGATGCAGGCCTACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10723:3..773+

>mRNA_Ecto-sp9_F_contig10723.642.1 ID=mRNA_Ecto-sp9_F_contig10723.642.1|Name=mRNA_Ecto-sp9_F_contig10723.642.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1542bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10723:3..773+ (Ectocarpus species9 EcSCA_722f female)
CACGGCAGGCGTCCTGCCCACGGTGATCGCCGCCGCTCGTCAAGCCCTAC
CCACGGACCGGCCCGCGGACCGTTCGAAGAATACGGTGGACTGCACCTCC
ACCACGGACCCGGCCGCCACAACCACCACCACCACCACCACCACGGGGGC
GGCGAGAGCGAAGGAGAAGAAGAAATGGCGATGATGCATGTCGGGCCGCG
TGGCCCTCCCCACGGAATGCACCCCCCCCGTCACCTCCGCGGACAACCCA
AGGGCGGGCCTCGTCGCCACGGCATGCCCATGCACGACCGCCAAATGCAC
CCCTTCCACGGAGGTCGCCGCTTCCACGGCGAGGGTGTACACAGCAGCGG
GGGTGAAGGAGAGCGTGGTCCTGGAATGCACATGGGCCCAGGTCACCGTG
CCCACCCTCGTCGCCACCCGGAACACCACGGCATACACCACCTGGACAAC
GACGGAGACACCGCCGGTATGGACATGGACCATGGGCCCCTTCTTCACAG
GGCAGGACGGCACCACCACCGCAGCCCCGTCGGTCTACACCACCGACCGC
ACGGCCCGCCCCCCGGCCCGCCCCCCGGCCCGCCAGGCATGCGGGGCGGA
ATGCGGTGCGAGGACTTCGGTGACGATTTCCACCCCCGACAGCATCAGCG
CCATGAGCAGCACCAGCAGCACCAGCAGCAGCACGGAAGGATGGCGGCGG
TCCGTGCTCGCGTTCACCCCTGTCACAAGCGCCGCGCTCCCTTGCAGATG
ATGCCGATGCAGGCCTACTGACACGGCAGGCGTCCTGCCCACGGTGATCG
CCGCCGCTCGTCAAGCCCTACCCACGGACCGGCCCGCGGACCGTTCGAAG
AATACGGTGGACTGCACCTCCACCACGGACCCGGCCGCCACAACCACCAC
CACCACCACCACCACGGGGGCGGCGAGAGCGAAGGAGAAGAAGAAATGGC
GATGATGCATGTCGGGCCGCGTGGCCCTCCCCACGGAATGCACCCCCCCC
GTCACCTCCGCGGACAACCCAAGGGCGGGCCTCGTCGCCACGGCATGCCC
ATGCACGACCGCCAAATGCACCCCTTCCACGGAGGTCGCCGCTTCCACGG
CGAGGGTGTACACAGCAGCGGGGGTGAAGGAGAGCGTGGTCCTGGAATGC
ACATGGGCCCAGGTCACCGTGCCCACCCTCGTCGCCACCCGGAACACCAC
GGCATACACCACCTGGACAACGACGGAGACACCGCCGGTATGGACATGGA
CCATGGGCCCCTTCTTCACAGGGCAGGACGGCACCACCACCGCAGCCCCG
TCGGTCTACACCACCGACCGCACGGCCCGCCCCCCGGCCCGCCCCCCGGC
CCGCCAGGCATGCGGGGCGGAATGCGGTGCGAGGACTTCGGTGACGATTT
CCACCCCCGACAGCATCAGCGCCATGAGCAGCACCAGCAGCACCAGCAGC
AGCACGGAAGGATGGCGGCGGTCCGTGCTCGCGTTCACCCCTGTCACAAG
CGCCGCGCTCCCTTGCAGATGATGCCGATGCAGGCCTACTGA
back to top