mRNA_Ecto-sp9_F_contig1071.633.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1071.633.1
Unique NamemRNA_Ecto-sp9_F_contig1071.633.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1071.633.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX8_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.220e-63
Identity = 273/322 (84.78%), Postives = 275/322 (85.40%), Query Frame = 1 
Query:    1 RNDEDLGDDFALDLPLDLETLTFAFAFNRLPADGVEIXXXXXXXXXXXXXXXXPRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEWAVLLPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQAADGGWPPAGLKSVVVGSKFSGDATESAXXXXXXXXXXXXXXXXXFSITRRLSPRRARRRGSKINT 966
            RNDEDLGDDFALDLPLDLETLTFAFAFNRLPADGVEIXXXXXXXXXXXXXXXXPRPAAA                         XXXXXXXXX   AAEWAV LPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQAADGGWPPAGLKSVVVGSKFSGDA ES+                 FSITRRLSPRRARRRGSKI+T
Sbjct:  842 RNDEDLGDDFALDLPLDLETLTFAFAFNRLPADGVEIXXXXXXXXXXXXXXXXPRPAAAAIAAAGRPSSPRPSSGGDKAAMVVPXXXXXXXXXGAGAAEWAVFLPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQAADGGWPPAGLKSVVVGSKFSGDAAESSSAAATSEGTGDEGGGEGFSITRRLSPRRARRRGSKIDT 1163
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1071.633.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.810e-48
Identity = 261/288 (90.62%), Postives = 262/288 (90.97%), Query Frame = 1 
Query:    1 RNDEDLGDDFALDLPLDLETLTFAFAFNRLPADGVEIXXXXXXXXXXXXXXXXPRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AAEWAVLLPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQAADGGWPPAGLKSVVVGSKFSGDATESA 852
            RNDEDLGDDFA DLPLDLETLTFAFAFNRLPADGVEI                PRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    A  WAVLLPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQ+ADGGWPPAGL SVVVGSKFSGDA E A
Sbjct: 1095 RNDEDLGDDFARDLPLDLETLTFAFAFNRLPADGVEIDWPPDLKAVHFGMAFNPRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGAVGWAVLLPPSLEEVVFGGHFNQPVEGVAWXXXXXXXXXXXXXXXXXXXXXXXDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSPWPTPSLTHLTFGKGFDQPLPQSADGGWPPAGLTSVVVGSKFSGDAAEPA 1382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1071.633.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.220e-6384.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.810e-4890.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1071contigEcto-sp9_F_contig1071:23483..26414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-07_002010.1
Exons4
Model size969
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1071.633.1prot_Ecto-sp9_F_contig1071.633.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1071 23485..26414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.2945657-CDS-Ecto-sp9_F_contig1071:23484..238781622928291.2945657-CDS-Ecto-sp9_F_contig1071:23484..23878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 23485..23878 -
1692277823.6286461-CDS-Ecto-sp9_F_contig1071:23484..238781692277823.6286461-CDS-Ecto-sp9_F_contig1071:23484..23878Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 23485..23878 -
1622928291.3233294-CDS-Ecto-sp9_F_contig1071:24486..245491622928291.3233294-CDS-Ecto-sp9_F_contig1071:24486..24549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 24487..24549 -
1692277823.6380064-CDS-Ecto-sp9_F_contig1071:24486..245491692277823.6380064-CDS-Ecto-sp9_F_contig1071:24486..24549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 24487..24549 -
1622928291.3382134-CDS-Ecto-sp9_F_contig1071:25362..255081622928291.3382134-CDS-Ecto-sp9_F_contig1071:25362..25508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 25363..25508 -
1692277823.6481009-CDS-Ecto-sp9_F_contig1071:25362..255081692277823.6481009-CDS-Ecto-sp9_F_contig1071:25362..25508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 25363..25508 -
1622928291.3522594-CDS-Ecto-sp9_F_contig1071:26051..264141622928291.3522594-CDS-Ecto-sp9_F_contig1071:26051..26414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 26052..26414 -
1692277823.658286-CDS-Ecto-sp9_F_contig1071:26051..264141692277823.658286-CDS-Ecto-sp9_F_contig1071:26051..26414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 26052..26414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1071.633.1

>prot_Ecto-sp9_F_contig1071.633.1 ID=prot_Ecto-sp9_F_contig1071.633.1|Name=mRNA_Ecto-sp9_F_contig1071.633.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=322bp
RNDEDLGDDFALDLPLDLETLTFAFAFNRLPADGVEIDWPPDLKAVHFGM
AFNPRPAAAAAAAAGRPSSPRPSSGGDKAAMVVPAKGSGPPPPGAGAAEW
AVLLPPSLEEVVFGGHFNQPVEGVAWPPGLRRLVFGANFKQKVEEADWPD
SLEEMTFGSYFNNPIERVKWPKSLRKLVFGTGFNQPVENCSFSGSLEDIV
FGTHFNQPVAGLRWPSSLQRATFGDRFNKPVVSSPWPTPSLTHLTFGKGF
DQPLPQAADGGWPPAGLKSVVVGSKFSGDATESAAAAAAAEGTGEEGGGG
GFSITRRLSPRRARRRGSKINT
back to top

mRNA from alignment at Ecto-sp9_F_contig1071:23483..26414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1071.633.1 ID=mRNA_Ecto-sp9_F_contig1071.633.1|Name=mRNA_Ecto-sp9_F_contig1071.633.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2932bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1071:23483..26414- (Ectocarpus species9 EcSCA_722f female)
AGGAATGACGAGGACCTCGGAGACGACTTCGCGCTCGACCTCCCGCTGGA
CCTGGAGACCCTTACCTTCGCCTTCGCCTTCAACCGCCTTCCCGCCGACG
GCGTCGAAATCGACTGGCCCCCCGACCTCAAGGCCGTGCACTTCGGGATG
GCCTTCAACCCCCGCCCCGCCGCCGCCGCCGCTGCCGCCGCCGGACGCCC
TTCTTCTCCCCGTCCTTCTAGCGGAGGCGATAAGGCGGCGATGGTGGTGC
CCGCTAAGGGGTCGGGGCCGCCGCCGCCTGGAGCGGGGGCGGCAGAGTGG
GCCGTTTTGTTGCCGCCGTCACTGGAAGAGGTGGTGTTCGGTGGGCATTT
CAATCAGCCTGTGGTGAGACAAGCGGGGGTGCGGGACGTTGGTTGGCGGC
GGTCGCCGTGGGGGTGTACTCATAGCCCTGCATGCCGTAGTCGTTAGACC
ATTGACCTCGGGGGGCGAGGTTAAGCTGGATACAGAGGCGGAAGAGGGGC
AAATTTTGAGTTGATTCCATTCCAGGTTCTCGAGTGTATGCACATTTGAT
GTTGCAGCTAGGTCATGCTTGTGTCGCAGCAGGTCCTTCCTGCCTGCGTT
TCCGTAACGTTTGGCATATCGATTGATGAGAGTTCGTTGTCCTCCCACCA
TCCAGCTGCGGCACGAAAGACAACACGTGAATCCACAAACACCATGTGAA
TGCTACAACATCACCATGCCTTCATATTGTTCTGTGTTTTGTTTGTCTCT
TACCTCTCTTGTTTTTTTTCTTGTTTCGATGCGTGCCGGCTTCGTTCAAG
GCGATGTATCGGCGCTGATGTTGTTTTGGCCGACACTTCTGTTGCCTTGT
CTGTCTCCGACCTGTCCATGCGCTTTGCCTGCCCCCCCCTCTCCGCGAGC
GAGCAGGAAGGCGTTGCGTGGCCTCCAGGGCTCAGACGCCTCGTCTTCGG
AGCGAACTTCAAGCAGAAGGTCGAGGAAGCCGACTGGCCAGACAGCTTGG
AGGAGATGACCTTTGGATCCTACTTCAACAACCCGATCGAGCGCGTGAAG
TGGTGCGTGGTAGAAATAACGTTCAGCAAGCATCTTGTTATGTTTCGGAT
AGCGGTCGAGTTTTTTCCTGACATGTGAAGTTGCGGCACGCGCTATTGGT
GGCCGAGTTTTTCGTGACGTGTGAAGTGCGACACGCGCTATTATAGTTGA
TGGCCGAGATTTTCTTGACATCTGCAGTGCGGCACGAGCTACGCCCGGGG
TTCGGTAATAGCAGGTTCTCTCGAAGTGCGTTGTGGGGTCCTGTCCCAAA
AAAACATGGAAAAAAAGAGGCTCGGCGATGCATGTTCCGGTTCGGGCATG
CGGGAGAATAACGTCGGTTCTCCCTTCGGTGAGCATGAACGAAAGAATTA
CACACACACACACATGCGGGTCAGACGCGCTTGGGCCTTGGGACGAAAAC
CGGGGCTCATGTATCGACCTCCGCCCCCTCGTGCCTCTGGGCAGTGGCAG
CAACCAAGAATATAGGGTCGTCCTTGATTTACGTGTGCATCGCCTTTGCA
AGCGCAACCAGCAGTATCATTGCTAAAAACCCGAGCACGAAACCAAACAC
GGAGCGGGAGAGGGCAAGCAGCACACGATAACCCTATGGCCCCCTCGAAA
TACTCTGTTACAGATCGTTGCGGCCGCGGCACACCCCAAACGCGAGGATG
CTGATCAGATTCTGTTTTTTTCCTTGTGAAACGTAGCCTGGGCCGGCGTG
AACACGGGCATATCGCTCCTTCCCGGCATTGAAGAGATGCGAGATCAACG
GTCTCACGACTACGGCATGCGTATCCATGAGTACCCCCCCCCCCCCCCCC
CTGCTAACATGTCAGGCCTAAATCTCTAAGAAAACTCGTGTTCGGGACGG
GCTTCAACCAGCCGGTCGAGAATTGCAGGTGAAGTCATTTTTATTTTCCA
CCAAGCGAAGTGCAAATTTGTTTGGCTTGTGGTGGGCGTTGGTGTTCCTC
GGAGTCTAGACTGTTTGGGTTGGAGGTTCGGCTTTCGACGCAGGAGTTGG
ATGAACCCTTAAGAGGCGTTACTGCTGCGTTCACTCGGCCCCTCGTGTGC
TCCCGTCTCCCCATTGTAGCACACGACTGTCTCCCTTGTCGATTCCTCCG
CACCTTTTCCCGGCGGGGCAATGAGAGTCTGCGTTTTTGTTGAGGTGGCG
TAAAGCGGAAGTGTCCTTGCGGATGCACGTCTCGGCATGGACTGCCTGTG
GCGATCGCCCTCTCGGCTCATGCCGCATGATGCGGCACTACGATTTTTTT
GCTAGACATTACTCTGAACTAATGCCTTGTGATGATGACAGTCGATTTCA
TCCCCGTTGTGGGGATGGTACGCCTCATGGCCTAACACAACCAGTGCAGT
GGTCGCCGGCGACGAACATGAAGCACCCCCCCACCACTTCGCATACCCTC
ACGTTTGTCTTTCCCCCGTGTACCTGTTCCCCGTTGAAACCACTACCACA
AAACAAAAACGGAAACCGAAAAATTGAAAAAAAAAGTTTCTCCGGCTCTC
TCGAGGATATCGTTTTCGGTACCCACTTCAACCAGCCGGTAGCTGGTCTG
AGGTGGCCCTCCTCGCTGCAGCGCGCGACGTTCGGGGACCGCTTCAACAA
GCCGGTCGTGTCCTCGCCGTGGCCGACTCCCTCCCTCACGCACCTCACCT
TCGGCAAAGGCTTCGACCAGCCCTTGCCGCAAGCGGCGGACGGCGGGTGG
CCCCCCGCCGGGCTTAAGTCTGTCGTCGTCGGGTCCAAGTTCTCCGGAGA
TGCGACGGAATCAGCAGCAGCAGCAGCAGCAGCCGAGGGGACCGGGGAGG
AGGGAGGAGGAGGAGGGTTTTCCATCACGAGGAGGCTTTCGCCTCGGCGG
GCGCGGCGTAGAGGAAGCAAGATCAACACAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1071:23483..26414-

>mRNA_Ecto-sp9_F_contig1071.633.1 ID=mRNA_Ecto-sp9_F_contig1071.633.1|Name=mRNA_Ecto-sp9_F_contig1071.633.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1071:23483..26414- (Ectocarpus species9 EcSCA_722f female)
AGGAATGACGAGGACCTCGGAGACGACTTCGCGCTCGACCTCCCGCTGGA
CCTGGAGACCCTTACCTTCGCCTTCGCCTTCAACCGCCTTCCCGCCGACG
GCGTCGAAATCGACTGGCCCCCCGACCTCAAGGCCGTGCACTTCGGGATG
GCCTTCAACCCCCGCCCCGCCGCCGCCGCCGCTGCCGCCGCCGGACGCCC
TTCTTCTCCCCGTCCTTCTAGCGGAGGCGATAAGGCGGCGATGGTGGTGC
CCGCTAAGGGGTCGGGGCCGCCGCCGCCTGGAGCGGGGGCGGCAGAGTGG
GCCGTTTTGTTGCCGCCGTCACTGGAAGAGGTGGTGTTCGGTGGGCATTT
CAATCAGCCTGTGAGGAATGACGAGGACCTCGGAGACGACTTCGCGCTCG
ACCTCCCGCTGGACCTGGAGACCCTTACCTTCGCCTTCGCCTTCAACCGC
CTTCCCGCCGACGGCGTCGAAATCGACTGGCCCCCCGACCTCAAGGCCGT
GCACTTCGGGATGGCCTTCAACCCCCGCCCCGCCGCCGCCGCCGCTGCCG
CCGCCGGACGCCCTTCTTCTCCCCGTCCTTCTAGCGGAGGCGATAAGGCG
GCGATGGTGGTGCCCGCTAAGGGGTCGGGGCCGCCGCCGCCTGGAGCGGG
GGCGGCAGAGTGGGCCGTTTTGTTGCCGCCGTCACTGGAAGAGGTGGTGT
TCGGTGGGCATTTCAATCAGCCTGTGGAAGGCGTTGCGTGGCCTCCAGGG
CTCAGACGCCTCGTCTTCGGAGCGAACTTCAAGCAGAAGGTCGAGGAAGC
CGACTGGCCAGACAGCTTGGAGGAGATGACCTTTGGATCCTACTTCAACA
ACCCGATCGAGCGCGTGAAGTGGAAGGCGTTGCGTGGCCTCCAGGGCTCA
GACGCCTCGTCTTCGGAGCGAACTTCAAGCAGAAGGTCGAGGAAGCCGAC
TGGCCAGACAGCTTGGAGGAGATGACCTTTGGATCCTACTTCAACAACCC
GATCGAGCGCGTGAAGTGGCCTAAATCTCTAAGAAAACTCGTGTTCGGGA
CGGGCTTCAACCAGCCGGTCGAGAATTGCAGGCCTAAATCTCTAAGAAAA
CTCGTGTTCGGGACGGGCTTCAACCAGCCGGTCGAGAATTGCAGTTTCTC
CGGCTCTCTCGAGGATATCGTTTTCGGTACCCACTTCAACCAGCCGGTAG
CTGGTCTGAGGTGGCCCTCCTCGCTGCAGCGCGCGACGTTCGGGGACCGC
TTCAACAAGCCGGTCGTGTCCTCGCCGTGGCCGACTCCCTCCCTCACGCA
CCTCACCTTCGGCAAAGGCTTCGACCAGCCCTTGCCGCAAGCGGCGGACG
GCGGGTGGCCCCCCGCCGGGCTTAAGTCTGTCGTCGTCGGGTCCAAGTTC
TCCGGAGATGCGACGGAATCAGCAGCAGCAGCAGCAGCAGCCGAGGGGAC
CGGGGAGGAGGGAGGAGGAGGAGGGTTTTCCATCACGAGGAGGCTTTCGC
CTCGGCGGGCGCGGCGTAGAGGAAGCAAGATCAACACATTTCTCCGGCTC
TCTCGAGGATATCGTTTTCGGTACCCACTTCAACCAGCCGGTAGCTGGTC
TGAGGTGGCCCTCCTCGCTGCAGCGCGCGACGTTCGGGGACCGCTTCAAC
AAGCCGGTCGTGTCCTCGCCGTGGCCGACTCCCTCCCTCACGCACCTCAC
CTTCGGCAAAGGCTTCGACCAGCCCTTGCCGCAAGCGGCGGACGGCGGGT
GGCCCCCCGCCGGGCTTAAGTCTGTCGTCGTCGGGTCCAAGTTCTCCGGA
GATGCGACGGAATCAGCAGCAGCAGCAGCAGCAGCCGAGGGGACCGGGGA
GGAGGGAGGAGGAGGAGGGTTTTCCATCACGAGGAGGCTTTCGCCTCGGC
GGGCGCGGCGTAGAGGAAGCAAGATCAACACA
back to top