mRNA_Ecto-sp9_F_contig10707.630.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL5_ECTSI) HSP 1 Score: 550 bits (1416), Expect = 7.870e-193 Identity = 269/280 (96.07%), Postives = 276/280 (98.57%), Query Frame = 1
Query: 1 VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPVVHPV 840
VC+RLVNENV+ARCEAQ+CVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVT+QTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDID DS SGSGRSVS RESGDTPRGTCLIVDDTASIRKM+HHFLKKHDVDLACNG EGLERLKKKEYDIVLMDISMPVMDGR+CLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSP+VHPV
Sbjct: 307 VCSRLVNENVDARCEAQACVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTHQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDTDSTSGSGRSVSLRESGDTPRGTCLIVDDTASIRKMMHHFLKKHDVDLACNGEEGLERLKKKEYDIVLMDISMPVMDGRKCLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPMVHPV 586
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F2_9PHAE) HSP 1 Score: 498 bits (1282), Expect = 3.280e-175 Identity = 248/279 (88.89%), Postives = 258/279 (92.47%), Query Frame = 1
Query: 1 VCTRLVNENVEARCEAQSCVPPSLLTD-----VEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGS 822
VC RLVNENVEARC+AQ+CVP SLLTD VEWVWQILMNLVTNAAKYTHRGRI+VIVGYRD L LRVEDTGIGIDDSKKGAVFG YVT+QTYGHASHGIGLYSVKTKVDALGGSCRV DNPGGGT+FEVLIPAKVDKDIDIDSPSGSGRSVS RESGDT RGTCLIVDDTASIRKM+ HFLK+HDVDLACNGVEGLERLK KEYDIVLMDISMPVMDGRECLARFR+WEAVNR NRQRIY+MSANV+EVD GFDGSLPKPMD KRLR LLQKR S
Sbjct: 106 VCNRLVNENVEARCQAQACVPASLLTDGLLTDVEWVWQILMNLVTNAAKYTHRGRINVIVGYRDGRLSLRVEDTGIGIDDSKKGAVFGMYVTHQTYGHASHGIGLYSVKTKVDALGGSCRVFDNPGGGTIFEVLIPAKVDKDIDIDSPSGSGRSVSLRESGDTTRGTCLIVDDTASIRKMMRHFLKQHDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVEVDTGFDGSLPKPMDGKRLRGLLQKRES 384
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Response (regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN7_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.200e-107 Identity = 156/174 (89.66%), Postives = 162/174 (93.10%), Query Frame = 1
Query: 319 VDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQKRGSPVVHPV 840
VDALGGSCRV DNPGGGT+FEVLIPAKVDKDIDIDSPSGSGRSVS RESGDT RGTCLIVDDTASIRKM+ HFLK+HDVDLACNGVEGLERLK KEYDIVLMDISMPVMDGRECLARFR+WEAVNR NRQRIY+MSANV+EVD GFDGSLPKPMD KRLR LLQKR S VHPV
Sbjct: 2 VDALGGSCRVFDNPGGGTIFEVLIPAKVDKDIDIDSPSGSGRSVSLRESGDTTRGTCLIVDDTASIRKMMRHFLKQHDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVEVDTGFDGSLPKPMDGKRLRGLLQKRESLKVHPV 175
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: EsV-1-112 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV4_ESV1K) HSP 1 Score: 231 bits (590), Expect = 1.600e-68 Identity = 132/275 (48.00%), Postives = 173/275 (62.91%), Query Frame = 1
Query: 1 VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGY-RDDCLELRVEDTGIGIDDSKKGAVFGKYVTNQ-TYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNR---SNRQRIYSMSANVIEVDAGFDGSLPKPMDAKRLRRLLQ 810
VC R+ E V +RC +P +LTD EW++QILM L TNAA+YTH G IDV + + L + V DTG+GI DS+K VF K TN T GH S G+GL SVK KV ALGG + DN GGGTV V IP K + D +G+ S + + R + L+VDDT S+RK++ FLK H V++A +G +GL+++K K YD+V +D+ MPVMDG +CL +FREWE +NR N Q +Y MSA GFDGS+PKP+D RL +LQ
Sbjct: 314 VCIRV--EAVNSRCIVGDGIPAFVLTDGEWLFQILMTLATNAARYTHSGSIDVDINLVQSTHLLIVVRDTGVGIPDSEKRDVFDKDFTNDATNGHGSTGLGLNSVKRKVSALGGLYTITDNDGGGTVLSVQIPVK----LSADCYAGNVESNTDNVNACRVR-SILVVDDTPSVRKLMWRFLKDHMVEVAVDGADGLQKMKDKRYDVVFLDMMMPVMDGTQCLVQFREWEKLNRCGADNHQVVYCMSATSTNHLPGFDGSMPKPVDPTRLLSMLQ 581
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP) HSP 1 Score: 145 bits (367), Expect = 3.420e-36 Identity = 101/302 (33.44%), Postives = 149/302 (49.34%), Query Frame = 1
Query: 58 VPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDD----CLELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIP-----AKVDKDIDIDSPSGSG--------------RSVSPRESGDTP------------RGTCLIVDDTASIRKMVHHFLKKHDVDL--ACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWE---AVNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQKRGSP 825
V ++TD EW W +LMN ++NA K+T G I VG + L+++V DTGIGI + ++ +F + Q + + G+GLYSV K++ LGG+C V N G+VF IP + + ++ PSG G R+ E G + +GT L+++D R+++ L+K + A NG EGLE+LK+ Y +VL DI MPVMDG EC+ RFR+WE A Q + ++SAN D G + PKP+ K L LQ + P
Sbjct: 304 VAEQIITDKEWFWHMLMNFLSNARKFTTEGYIRTSVGIASEGGVEYLDVKVADTGIGIQEEQRKKLFAAFSQLQDFAGGT-GLGLYSVLKKINVLGGACGVEANTPKGSVFWFKIPYVPCTPEAESSLEEVQPSGRGVWHNSAELTFSSNTRAERVVERGASAGDVLTGSAKAAGKGTVLLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMNDFFPKPVKIKELLSHLQGKFLP 604
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L196_9EUKA) HSP 1 Score: 139 bits (349), Expect = 5.830e-34 Identity = 93/277 (33.57%), Postives = 143/277 (51.62%), Query Frame = 1
Query: 61 PPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDV---IVGYRDDC--LELRVEDTGIGIDDSKKGAVFGKYVTNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGT----------CLIVDDTASIRKMVHHFLKK---HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEA--VNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQK 813
PP L TD +W IL++L+TNA ++T G I+V + G++D +++ V+DTG GI + + +F + N G + G+G Y+V+ + LGGSC +DN G+VF + P + D+ S SP + + T L++DD +IRKM L+K +VD+A NG +GLE LKK Y +V D MPVM+G EC+ +REWE + + R I MSAN D G D KP+ +L+ ++++
Sbjct: 260 PPFLGTDEGLLWHILVDLLTNACQWTDEGSIEVKFSVSGWKDQVQLIKVEVKDTGCGIHQNIRSRLFQEPFVNT--GKSGFGLGCYNVRKNISMLGGSCGFVDNVPKGSVFWIEFP-NIPSVHDLQPMKQVATSGSPAKRPASQAATPPPLMPSSHKLLVIDDCMTIRKMTQRLLQKLGHENVDIAENGKDGLELLKKSSYSLVFCDFLMPVMNGVECVRAYREWEKGQPDLAKRTVIVGMSANAEPNDVQNAQNNGMDEFCVKPITLSKLKEVIER 533
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LDX2_MAGMO) HSP 1 Score: 139 bits (351), Expect = 7.900e-34 Identity = 88/273 (32.23%), Postives = 140/273 (51.28%), Query Frame = 1
Query: 43 EAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDCLELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSP-RESGDTPRGTCLIVDDTASIRKMVHHFLKK--HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVDA------GFDGSLPKPMDAKRLRRLLQKRGSP 825
+ Q +P ++ D V Q+L+NL++NA K+T GRI + + + L VED+GIGIDD++ A+F K+ + T G+GL + V+ +GG V N G F IP + S R +SP ++ TP L+V+D+ R ++ FLK+ H + LACNG EG+E ++ + + ++LMD+ MPVMDG R+WEA I +++A+ +E DA G D + KP+ L + +Q+ P
Sbjct: 397 DQQETLPVQVVGDAGRVRQVLLNLISNAIKFTDAGRIAISAHMQSEQLLFEVEDSGIGIDDTQIHAIFEKFTQVDSGMTRRFGGSGLGLTISRQLVELMGGQIGVKRNTTIGCTFYFSIPYQQA------SQQKQNRPLSPPKDDATTPPCKILLVEDSEDNRLLIQSFLKRTNHQLVLACNGQEGVESVQSESFQLILMDMQMPVMDGYSATRAIRQWEAAQHHPATPIVALTAHALEGDAEKSLQAGCDAHITKPIKKNTLLKTIQRFALP 663
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: PAS (domain-containing hybrid sensor histidine kinase/response regulator n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE4A7B0) HSP 1 Score: 137 bits (344), Expect = 6.160e-33 Identity = 87/258 (33.72%), Postives = 135/258 (52.33%), Query Frame = 1
Query: 97 QILMNLVTNAAKYTHRGRIDVIVGYRDD-----CLELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEV---LIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKK--HDVDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVD------AGFDGSLPKPMDAKRLRRLLQK 813
QI+ NL+ NA K+T +GRIDV+V R + CL L V DTG+GI K +F K++ + H G+GL K +A+GG+ V PG G+ F V L + D+ ++ D+ + R L+V+D +V L + + D+A NG+EG+ R+++ YD++LMD+ MP MDG E R R+ E+ ++R I +M+A+V + D AG D +PKP D K+L +L +
Sbjct: 383 QIVTNLLANAVKFTDKGRIDVMVALRSEDSDQSCLSLSVADTGVGIPADKVDVIFDKFMQADASVARSHGGSGLGLSICKALAEAMGGAISVQSTPGLGSTFTVNICLAHSARDERMNADTETAEARR------------NVLVVEDFEPNVLVVSSVLDELGYSYDVATNGMEGVRRVERGAYDLILMDVQMPGMDGFESTRRIRQMESERGAHRTPIVAMTAHVFDRDKHKCLEAGMDDFIPKPFDPKQLESVLSR 628
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LJU9_MAGMO) HSP 1 Score: 134 bits (336), Expect = 7.520e-32 Identity = 89/282 (31.56%), Postives = 139/282 (49.29%), Query Frame = 1
Query: 22 ENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRD----DCLELRVEDTGIGIDDSKKGAVFGKYVTNQ---TYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHDVDL--ACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIE------VDAGFDGSLPKPMDAK-RLRRLLQKRG 819
+ VE + E P ++ DV V Q+L NL++NA K+T G I V + + +L V DTG+GI ++ + +F K+ + T G+GL+ + V +GGS +L G G+ F V +P K D P + + P L+VDD+ R ++ FLK L A NG E LE++++ YD+ LMD+ MPVMDG E R R+WE + +++A+V+ ++AG DG L KP+ + L+ L+Q G
Sbjct: 346 KGVELKMELPGSFPTTVSLDVSRVQQVLFNLLSNALKFTESGEIVVALSTKQVDGSAGFQLSVSDTGVGIAEADQIHIFDKFTQSDGSMTRRFGGTGLGLHICQRLVGLMGGSIYLLSEQGKGSRFTVELPFKEPVSTTADDKRSPAGQHPPLSTEEIPPLKILLVDDSEDNRALIQAFLKSTPCVLEEASNGAEALEKMQRNRYDLTLMDMQMPVMDGLEATRRHRQWEVEQGREPMLVIALTAHVMAEHQKMAMEAGCDGYLTKPLKKRVLLKELMQLPG 627
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Match: Histidine (kinase n=1 Tax=Halobacteriovorax marinus TaxID=97084 RepID=A0A1Y5F9X5_9PROT) HSP 1 Score: 131 bits (329), Expect = 3.990e-31 Identity = 90/257 (35.02%), Postives = 131/257 (50.97%), Query Frame = 1
Query: 73 LTDVEWVWQILMNLVTNAAKYTHRGRIDVIVGYRDDC-LELRVEDTGIGIDDSKKGAVFGKYV---TNQTYGHASHGIGLYSVKTKVDALGGSCRVLDNPGGGTVFEVLIPAKVDKDIDIDSPSGSGRSVSPRESGDTPRGTCLIVDDTASIRKMVHHFLKKHD--VDLACNGVEGLERLKKKEYDIVLMDISMPVMDGRECLARFREWEAVNRSNRQRIYSMSANVIEVD------AGFDGSLPKPMDAKRLRRLL 807
L D + QIL NL++NA K+T G I + V + L V DTGIGI++SK +F + T+ T G+GL VK GG V NPG G+ F + +P + +I + +V P D L+ +D I K++ +L+K VD+ NG +G+E K EYDIVLMDISMP+M+G E R +E + I ++SANV++ D +GF+ LPKP+ +K LR +
Sbjct: 280 LGDSHRLRQILSNLISNALKFTEVGTITLNVSRKSQGDLLFEVIDTGIGIEESKLELIFDSFSQADTSTTRKFGGTGLGLSIVKRLTALWGGVVEVKSNPGVGSTFSISLPMEESSNISL-LDEKKEFNVEPLSQIDLSSIKVLLCEDNNVIIKLMTKYLEKMSIKVDIGKNGQQGVELFKSNEYDIVLMDISMPIMNGLEATVHMRNYEVETKKMATPIVAVSANVLKEDVDCYLSSGFNAHLPKPLCSKTLRETI 535 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10707.630.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10707.630.1 >prot_Ecto-sp9_F_contig10707.630.1 ID=prot_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp VCTRLVNENVEARCEAQSCVPPSLLTDVEWVWQILMNLVTNAAKYTHRGRback to top mRNA from alignment at Ecto-sp9_F_contig10707:2066..4276- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10707.630.1 ID=mRNA_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2211bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10707:2066..4276- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10707:2066..4276- >mRNA_Ecto-sp9_F_contig10707.630.1 ID=mRNA_Ecto-sp9_F_contig10707.630.1|Name=mRNA_Ecto-sp9_F_contig10707.630.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10707:2066..4276- (Ectocarpus species9 EcSCA_722f female)back to top |