mRNA_Ecto-sp9_F_contig107.622.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig107.622.1
Unique NamemRNA_Ecto-sp9_F_contig107.622.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX58_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 2.780e-118
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLVSGPV 825
            MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLVSGPV
Sbjct:    1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLVSGPV 177
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: S1 (motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX29_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.530e-70
Identity = 117/177 (66.10%), Postives = 143/177 (80.79%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITV--TNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAG-GYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLVS 816
            MFYLK L++ +L+ P  FGP L + + R L+E+VEG S+G+ GFVI+V   N ++  ++MGTIE+DTG AN++  Y AICFRPF NEVLDA VS+VT+LGFFAEVGPLE+FVSR  MP+DIA  GYD VGDMWVS ED + EIK GCGVRLRIIG+TV AELKAVGS+KDD+LGLVS
Sbjct:    1 MFYLKTLKKDLLLEPQFFGPNLHEVVGRLLLEQVEGMSLGNDGFVISVFSQNSANTSMEMGTIEYDTGAANIICTYEAICFRPFRNEVLDATVSNVTDLGFFAEVGPLEIFVSRFNMPEDIANTGYDSVGDMWVS-EDKEVEIKKGCGVRLRIIGITVEAELKAVGSMKDDYLGLVS 176
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LV75_HETAK)

HSP 1 Score: 214 bits (546), Expect = 3.450e-64
Identity = 105/175 (60.00%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV-GAELKAVGSIKDDFLGLVS 816
            MF+LK+L R + +PP+  GPKLK+TIRR+LIEEVEG +VG LG+VITVT + D+ I  G IE+D+GF    VVY AICFRPF +EVLDA +S VTELGFFA+VGPL VFVSR  MP D+  GYDP  ++W  SED + E+++G GVRLRI+G++V  A++ A+G++ DD+LGLVS
Sbjct:    1 MFFLKQLTRELQLPPAFLGPKLKETIRRRLIEEVEGQAVGKLGYVITVTEMKDEAISQGLIEYDSGFVTFNVVYSAICFRPFRDEVLDATISSVTELGFFADVGPLTVFVSRHAMPADLQEGYDPARELW-QSEDREVELRAGAGVRLRIMGLSVDAADISAIGTVADDYLGLVS 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2T3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 7.150e-60
Identity = 101/175 (57.71%), Postives = 134/175 (76.57%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV-GAELKAVGSIKDDFLGLVS 816
            MF+LKEL R +L+PP+  GPK+K+TIRR+LIEEVEGT +G  G+VITVT V ++ ++ G I  + G     + Y AICFRPF  EVLDA V+ VTELGFFAEVGPL+VFVSR  MP D+  G+D   ++WVS ED + E++ GCGVRLRI+G++V  A++ A+G+IKDD+LGL+S
Sbjct:    1 MFFLKELTRELLLPPAYLGPKIKETIRRRLIEEVEGTCLGKYGYVITVTEVKEEGMKTGVISNEFGEVIFHISYDAICFRPFKGEVLDANVTVVTELGFFAEVGPLQVFVSRHAMPQDLQEGFDAANEVWVS-EDKEVELRQGCGVRLRIMGLSVDAADISAIGTIKDDYLGLIS 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Uncharacterized (protein n=27 Tax=Oomycota TaxID=4762 RepID=K3XAJ8_GLOUD)

HSP 1 Score: 198 bits (504), Expect = 5.530e-58
Identity = 100/175 (57.14%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLVS 816
            MF+LK+L R +L+ P  FGPKL D IR +LIEEVEGTS+G  G+VITVT V D+ I  G I+ ++GF    + YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+ GCGVRL+I+GV+V   E+ A+G+IKDD+LGL+S
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKGCGVRLKIMGVSVDVTEINAIGTIKDDYLGLIS 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLJ0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.950e-55
Identity = 93/178 (52.25%), Postives = 131/178 (73.60%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDD-QIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLVSGP 822
            MF+ K+LR  +L+ P   GPKLK TIRR+LI+E+EG+ +  +G+V+ VT+++D   I+ G IE++TG  + +V Y A+ FRPF NEVLDA V+ V +LGFF + GPL+VFVSR  +P DI  G+DP  DMWVS ED + EIK GC VRLRI+G+ + A ++ AVG+++DDFLG++  P
Sbjct:    1 MFFYKKLRHEVLISPEYLGPKLKQTIRRRLIDEIEGSCINKIGYVVCVTDINDTTDIEAGLIEYETGHTSFMVTYGAVLFRPFKNEVLDATVTTVNQLGFFCKAGPLQVFVSRYNLPGDIREGFDPNQDMWVS-EDGEVEIKRGCVVRLRIMGLAMEASKINAVGNMRDDFLGVIELP 177
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Uncharacterized (protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TU38_9STRA)

HSP 1 Score: 190 bits (482), Expect = 9.780e-55
Identity = 96/175 (54.86%), Postives = 129/175 (73.71%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLVS 816
            MF+LK+L+R +L+ P  FGPKL D IR +LIEEVEGTS+G  G+VI VT V D+ I  G I+ ++GF    + YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +D + EI+ G GVRL+I+GV++   E++A+G+IKD++LG++S
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGFVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSIDVTEIQAIGTIKDNYLGVIS 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: ING (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUM2_9STRA)

HSP 1 Score: 196 bits (499), Expect = 5.320e-54
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1 
Query:  292 SMFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLVS 816
            +MF+LK+L R +L+ P  FGPKL D IR +LIEEVEGTS+G  G+VITVT V D+ I  G I+  +G+    + YRAI FRPF N+VLDA VS V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+  CG+RLRI+GV++   E+ A+G+IKDD+LGL+S
Sbjct:  264 NMFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDSSGYVCFNIRYRAILFRPFKNQVLDAVVSVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKSCGIRLRIMGVSIDVTEINAIGTIKDDYLGLIS 438
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DP05_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.330e-51
Identity = 93/171 (54.39%), Postives = 125/171 (73.10%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFL 804
            MF+LK+L+R +L+ P  FGPKL D IR +LIEEVEGTS+G  G+VI VT V D+ I  G I+ ++G+    + YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +D + EI+ G GVRL+I+GV++   E++A+G+IKD++L
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGYVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSIDVTEIQAIGTIKDNYL 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVR4_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.060e-50
Identity = 89/155 (57.42%), Postives = 115/155 (74.19%), Query Frame = 1 
Query:  295 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV 759
            MF+LK+L R +L+ P  FGPKL D IR +LIEEVEGTS+G  G+VITVT V D+ I  G I+ ++GF    + YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+ GCGVRL+I+GV+V
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWIS-DDREVEIRKGCGVRLKIMGVSV 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig107.622.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.780e-118100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
S12.530e-7066.10motif domain-containing protein n=1 Tax=Tribonema ... [more]
Hypothetical3.450e-6460.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical7.150e-6057.71protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized5.530e-5857.14protein n=27 Tax=Oomycota TaxID=4762 RepID=K3XAJ8_... [more]
Hypothetical6.950e-5552.25protein n=2 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized9.780e-5554.86protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A... [more]
ING5.320e-5455.68domain-containing protein n=1 Tax=Albugo candida T... [more]
Uncharacterized2.330e-5154.39protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized6.060e-5057.42protein n=1 Tax=Phytophthora megakarya TaxID=4795 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig107contigEcto-sp9_F_contig107:42548..47690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue3.7e-96
Seed eggNOG ortholog2880.D7FX58
Preferred namePOLR2G
KEGG rclassRC00003,RC00060,RC00181,RC00496,RC02795
KEGG koko:K03015,ko:K09186
KEGG ReactionR00435,R00441,R00442,R00443,R03875,R03938,R04866,R04867
KEGG Pathwayko00230,ko00240,ko00310,ko01100,ko03020,ko04934,ko05016,ko05169,ko05202,map00230,map00240,map00310,map01100,map03020,map04934,map05016,map05169,map05202
KEGG ModuleM00180
GOsGO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010590,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012501,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031369,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0045935,GO:0045948,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051302,GO:0051716,GO:0055029,GO:0060147,GO:0060211,GO:0060213,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0061014,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097159,GO:0097393,GO:0097394,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1903313,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGsCOG1095@1,KOG3298@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size1432
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig107.622.1prot_Ecto-sp9_F_contig107.622.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig107 42842..47086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928289.351608-UTR-Ecto-sp9_F_contig107:42547..428411622928289.351608-UTR-Ecto-sp9_F_contig107:42547..42841Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig107 42548..42841 +
1692277822.9710333-UTR-Ecto-sp9_F_contig107:42547..428411692277822.9710333-UTR-Ecto-sp9_F_contig107:42547..42841Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig107 42548..42841 +
1622928289.5923088-UTR-Ecto-sp9_F_contig107:47086..476901622928289.5923088-UTR-Ecto-sp9_F_contig107:47086..47690Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig107 47087..47690 +
1692277823.0452292-UTR-Ecto-sp9_F_contig107:47086..476901692277823.0452292-UTR-Ecto-sp9_F_contig107:47086..47690Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig107 47087..47690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928289.3641706-CDS-Ecto-sp9_F_contig107:42841..428531622928289.3641706-CDS-Ecto-sp9_F_contig107:42841..42853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 42842..42853 +
1692277822.987674-CDS-Ecto-sp9_F_contig107:42841..428531692277822.987674-CDS-Ecto-sp9_F_contig107:42841..42853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 42842..42853 +
1622928289.3780136-CDS-Ecto-sp9_F_contig107:44149..442171622928289.3780136-CDS-Ecto-sp9_F_contig107:44149..44217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 44150..44217 +
1692277822.9994612-CDS-Ecto-sp9_F_contig107:44149..442171692277822.9994612-CDS-Ecto-sp9_F_contig107:44149..44217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 44150..44217 +
1622928289.432635-CDS-Ecto-sp9_F_contig107:44732..448021622928289.432635-CDS-Ecto-sp9_F_contig107:44732..44802Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 44733..44802 +
1692277823.0084407-CDS-Ecto-sp9_F_contig107:44732..448021692277823.0084407-CDS-Ecto-sp9_F_contig107:44732..44802Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 44733..44802 +
1622928289.453204-CDS-Ecto-sp9_F_contig107:45479..456681622928289.453204-CDS-Ecto-sp9_F_contig107:45479..45668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 45480..45668 +
1692277823.0172944-CDS-Ecto-sp9_F_contig107:45479..456681692277823.0172944-CDS-Ecto-sp9_F_contig107:45479..45668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 45480..45668 +
1622928289.5641706-CDS-Ecto-sp9_F_contig107:46426..465641622928289.5641706-CDS-Ecto-sp9_F_contig107:46426..46564Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 46427..46564 +
1692277823.0264575-CDS-Ecto-sp9_F_contig107:46426..465641692277823.0264575-CDS-Ecto-sp9_F_contig107:46426..46564Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 46427..46564 +
1622928289.5782185-CDS-Ecto-sp9_F_contig107:47029..470861622928289.5782185-CDS-Ecto-sp9_F_contig107:47029..47086Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 47030..47086 +
1692277823.0358775-CDS-Ecto-sp9_F_contig107:47029..470861692277823.0358775-CDS-Ecto-sp9_F_contig107:47029..47086Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 47030..47086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig107.622.1

>prot_Ecto-sp9_F_contig107.622.1 ID=prot_Ecto-sp9_F_contig107.622.1|Name=mRNA_Ecto-sp9_F_contig107.622.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTN
VSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFF
AEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRI
IGVTVGAELKAVGSIKDDFLGLVSGPV*
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mRNA from alignment at Ecto-sp9_F_contig107:42548..47690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig107.622.1 ID=mRNA_Ecto-sp9_F_contig107.622.1|Name=mRNA_Ecto-sp9_F_contig107.622.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5143bp|location=Sequence derived from alignment at Ecto-sp9_F_contig107:42548..47690+ (Ectocarpus species9 EcSCA_722f female)
CCTCTGCTCTACGCCACTGCTGTCAGCTCCCACAGCAGTACTGCCAGCAG
CAGAGAGAACCAAAGCATTTGGGTTTCGGGACCAGCAACCGCATACGCCA
TCGTCACAATTCTTGTGAGAGGCGAAGAGGGAGATAAGGATCCGCACAAC
GGTGGCAAAGTTCACAGTCCCGTGGGCAGCAAGCAGCGTCGGCGGGCCGC
CATTTTTGTGGGCTGTTGGAGAAAGGAGGGGAGTGCTCTCTTCCACGGGC
ACAGATCCTAGGGGGGGAGGGTGCTTGTTGGCGTCGGCGGCAGCATGTTT
TACCTTGTGAGTTGGGAGAGAGAGAGAGAGCAATGGTGAAAGAGATGGCT
GTGGAGCATCCGCGGGTGCCCCTAGCGGTGAACCGGGTTTGAATTGACTA
AAAAAACTGCTGTGCGTAGATTTTGAGAGTGTAGCAGCGGACGTCACGGT
CGTAAAGGTCCAGGCACATAAAGACATACATACTTTCAATGAGAGGCGTC
GTCGGCTTGTAAGAATACGGCCGCATTACATTGCTCAACGCTGAGAGGCC
CTCCCCATCATCGTGCACGACGGACTCCTTGGTATATTGCACGACAAGGT
GTCGGGTGCACCGTGGAAGCGTGCTTGTTTTGCATCACCGCCAGGCAGCG
CACAAAACACGATGTTGGTTTGTCTACTGAAAGCGCTTTCTGGGCGACAC
GGATGTTTTCAACGTCCACGCACAGAGAGGACATGGCAAATAATTGGCAG
CCGCAGGACAGCAGCAGTAATACTACTGCTGTAAGCACGTCGCCATCAAG
GGGTGGTATCACGCAGTATCCCTATTACTGTAGCAGGGTTTTCTATTATT
TATCAAGGTTGGATGAGAGCATGCAATCGGGGGAGTTGGGTTAGGGTTAG
GGATAGGGACAGGGATAGGGTCTGCGTATCCCCTCCCTGTTCTGTTTCCT
CATAAACTTTGATTTCTCGCCAAGACGGACCGTATTACGGGAAGGGCACT
CGTGGTATTGACGTCCTGTCGTCGCCGTCCAACATAGAGGCTGAACTCTT
CTTTCCAGTTCTCCTCCACTGCTGTCCCCCGCTGCAGGGGGCCCCGCGGA
TCAGAAAACTGTTCAAGCGTTTTTTCTCCCCCAGTGTACGACCTTCGTCT
TAGTCATGGATATTTTGGCAGATTTGTTGCCATTGAACGACGGTACGTAG
ATTCAAACTTTTTTAGAAAAACATTCCATCTTGTGTCGCGGAAAAAACAT
TGGCTTACTTCCCCTTTAGCTGCGGGCATCCTCAACAACAGCCTTCGTAG
CCCCGGTTTTGATTGCGGCCCAGCTGGGGCATGCGGCTGGACTCGCGTTC
TCCTGCAGCGCCATGCATGTTTTTGGTGTGTGGTGGTATACGAAGCGCCT
ACATACACACCTCCTGTCGAACAAACGCCGTGGTCTGTACAGTTGCGCTA
CAGAAGCATGCACGCCGCTTGACTGGCTGGAGCACCCATCGTGAGGGCCA
CTGCTGATAACTTCAACGCCTCCTACCTTGTTGGTTGTTGTTGTTGTTGC
TGACTCGATTCTCCGACAACGCATGCTGCCGCTGCCGCTGCCGCTGCTGC
AGAAAGAGCTGCGTCGGCCGATGCTCGTCCCGCCGTCAGATTTCGGGCCA
AAGCTCAAGGACACGATACGGTGAGGAATGACCATACGAGAATCACCCCC
CCTTCTTGGTCTTTCCTCTTGGAGACTTCAAACATTCATGCGTGTTAACT
CCGGGTGTAATGCTATCCTCGTCTCGCGATATCCGAGACACTTGGAGACT
GGCAGCCGGCGTTCGTTCGTCGTAAAGTGTTCTTGACCTCAGACGAGATC
GAATCTTTTCGTCAAGAGTTTTTTGGTTTGCTTCAGAGCGACGCAAATCC
GGAGCCTTCATGGGTGCCGCCGCTGCGCTTGAGATACTGCATGTTTCCCC
CCCTAAATACGGAGATTGTGAAGGCGGAGCAAGACCCGTGCCGAGTGACC
GTTGTATATGCTTACAGGAGCGTGTGGCCTTCGGGCCTTGGTGTTTATCC
AACGATCATTTGTGTTGTGTTTTTCCTTTGGTCTCGCCGATCGTCCAAAC
ATCAATCAAGTGGTTTTCGCTTTGCCGCTGCTCTGGCCTATCAACGTCCT
TTCACCCCCCCTACCTTGCCGACTGCGATCGACAGGCGAAAGCTTATCGA
GGAGGTCGAGGGGACTTCGGTGGGATCCCTGGGGTTCGTCATCACCGTCA
CAAACGTGAGCGGCCTTTTTTTTTCTTCTTCTGGGAAGCCGCTTGTCGTT
CCACTAGTGATTCTCCTGCCGGTTGTGTTGTGCGCGCCTCAGGTCGTCCT
CCCTTTTCGGTCGAATAGTGGGGAACGGAAGAGCCATCGAAGGAAGTATG
ACACTCTTGAGTTTTATCGTGTTTCTTGTGCTGGGGCCAGTGCGATGGTT
TGGTGGCTTTGCTCACGCGGTTGGGGGCGGCCGCTTGCCCATGATGCTGC
AGAGTCGGCGAATCCGTCAACTGCACGAGCTCTCCGCGATCGTTGGCTCT
CCGTTGTGCGAGCGTCGGTGTCAAGCTCGATTCCTGTGTCCTTGTGGTCC
TGAAGCCTGAACAATTTTTTCGTAGTGCCCACCGTGTGTTGCGTGTCTGT
CATGACGGAGCGGCGGGACCTCCGCGGGGTACTTGCCCCGAGCCCCACGA
GGGGTGTACATGGGTATGACGTACATGGGCATGACTGCATCTATTCATCC
CGTGGACACAGACTGTCGTGTTCAACAGAGTGCAAACTTCTTCTTTACCA
CATGGCTATGCCGAGTTCCCGTCCCCCCCGCGGTCGTACATATGCACCTA
TCGCATGTGACTTCTCAAGTATTTTCTTCAATTGCTCCGTGCACTCAACA
CCAACGGCCTTCCTTATGTCAACCTCACAAAGGTATCCGACGACCAGATC
CAGATGGGCACGATAGAGTTCGACACCGGGTTCGCGAACGTGTTGGTAGT
TTACCGCGCTATCTGCTTCCGGCCGTTCGTGAACGAGGTGCTCGATGCCG
CCGTGAGCCACGTGACCGAGCTCGGGTTCTTCGCGGAAGTCGGGCCCCTC
GAGGTTTTCGTCTCGCGCTTGGTGAGAGCTGCAGCTGGTGCTGCTGGTGC
TAGTCCTGGTGTTGTTGCTGTTGTTATTGTTGTTTTTGTTGCTGCTGTGG
TGGTTGACGTTGATGCTGTGTCCGCGGCCCAAACATTGTTGCCTTTTCCA
ATCGCGTTTACGTTCTGGCCTCTGCGACTCAGCCCCTTTCCTTGTTCCGT
TCTGCTTTGAGCTGTGGGTAAACCGATGCCTGCCGCATTCCCTGTGGGCA
GATTGATGACTGTCGTAAACACGGGTCACGGGCAAAGTAACGTGCGGACC
ACGATGCCACGAGAATCCTACAATCTTGTAGGAAACACGTGCGCAAGTCG
TGTTTGCGTGCAAGACGCCCACGTACGGTTGTGCTTGGTATTTGGCACCG
CGATTGGTGTTGTTCCTTTAGTGCAGACCACGCTGGCCTCTGGAGGCGCA
CACGGAGGCAGGCCGACCAACGGCCAGTCGCCGGAGACTGGTCTAGTCCG
CCCTCTATACCATGTCGTTGCCCCAGACTTCGTTTCCATGTGGGGCCGCC
CTGGCTGTACCTTGCCTTGTCGACCTCTGGCTATACCTCTTTTTGTCTGT
ACCCCTTTTTTTGTCGATCTCTCGCTATAGCCCTTCTGGTCGACCTCTCA
CTATTCCCGCTTTTTTGTCGACCTCTGGCTGTACTCCTTTTTGTCGACAT
CTGAATTTTCCCCTCCTACTTACGACCCCGGCACGACCGGCTCCGCGCTT
CGTTTTTCCCTCATTCGTTTTTCCCTCAGGGCATGCCGGACGACATCGCG
GGGGGTTACGATCCGGTTGGGGACATGTGGGTATCCTCCGAGGATTCGGA
TACGGAGATCAAGTCCGGCTGCGGGGTACGGCTGCGCATCATCGGAGTCA
CTGTTGGGGCAGAGTTGGTGAGATGATCCGGTGTGTTCCAGGCAATATTC
GTGTCTGCATTCGGGCTATCGCAGTCTCGCTTTGATTTTCAGCAAGGGCA
CGGCTTCAAGTGCGTGTATTGTAACCGCCTGCGCCGATGTAAAGGTGAAG
CGTCTTCGGTATCTGGAACCATCTTGCTCTCGACGGGATGTCTGGGGCGT
ACCTTTTCCGCCTCGAATGGCAAACGCTCAAACAGCTAGGGCCGGATGAG
GCAATTTCTTTCATCGAGCTTGAGGATGGCGTGCGGTGGTGTTGCTCCTG
TGTGAAGCACGTGCCGAGCGGCGCATTAATCCAGCCACTGATCCAACACG
AAGCAACAGTCGGTGTCCGTCGGCAGCGTGCCCGCTACCACCTCCTTTTT
CCCTTCCCAGGTCTTCGCTTCACACCCTTCAACTGACTTGATTTCTTGCC
TTGCTTGCGCGCGCGTACGCCCTCGGCAACAGAAAGCGGTGGGCAGCATT
AAGGACGACTTTCTGGGACTTGTGTCTGGACCGGTATAGCAGAAGCAAGC
GTCGGAAGGGCGGCGCACGCGGTCACCGGCCTGATAATTTTTGTGTAAAA
CGTTTTTTTTTCGCTAAAGCCGCCGCGGTCGACTTAGCCAGGGAGTGGAT
TCTGCTTTTTCGTGGTTGTTTTCAAGTTGATCTGCTGGGATCTCCCAGAC
CAGCCGGCTCCGCAGGGCCACATTGGAAGCAAGGAATTCGCGGGGCATCT
TTCGAAAGCCAGCACGTGGTCAGCGCACGTCGTGTCATTTTTTTTGGAAG
CAGGACTTTTGGCTAGGCTTCGGCGCAGCAGGTGTTCGGCGGTCCGTTCA
ATTTGGAAACATAGTTCATGCGATCAGACGTGCGGGTCCATTCTTGGATG
CCCTCCCTCACGTCTCGTCTGCTTGGAGATTTTCGTGTTGACGCACTTGT
GAAAGCCTGTCGCGCAACAGAAGGAAAGCCGTTGTACGGTGTCAAGAGTT
CCAGCGCCCTCAAAATGGAGTTTAGCAGCAGGTGACTGTTCGCAACGACG
TTGTTGTAGTCCCACCCGCGGTCACATTGTCTGTTGTCTCGTCGAACGCA
GGAAGAGTGACGGGCGAATTGTCTGAGATGGTGAGAAAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig107:42548..47690+

>mRNA_Ecto-sp9_F_contig107.622.1 ID=mRNA_Ecto-sp9_F_contig107.622.1|Name=mRNA_Ecto-sp9_F_contig107.622.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig107:42548..47690+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTACCTTATGTTTTACCTTAAAGAGCTGCGTCGGCCGATGCTCGT
CCCGCCGTCAGATTTCGGGCCAAAGCTCAAGGACACGATACGAAAGAGCT
GCGTCGGCCGATGCTCGTCCCGCCGTCAGATTTCGGGCCAAAGCTCAAGG
ACACGATACGGCGAAAGCTTATCGAGGAGGTCGAGGGGACTTCGGTGGGA
TCCCTGGGGTTCGTCATCACCGTCACAAACGCGAAAGCTTATCGAGGAGG
TCGAGGGGACTTCGGTGGGATCCCTGGGGTTCGTCATCACCGTCACAAAC
GTATCCGACGACCAGATCCAGATGGGCACGATAGAGTTCGACACCGGGTT
CGCGAACGTGTTGGTAGTTTACCGCGCTATCTGCTTCCGGCCGTTCGTGA
ACGAGGTGCTCGATGCCGCCGTGAGCCACGTGACCGAGCTCGGGTTCTTC
GCGGAAGTCGGGCCCCTCGAGGTTTTCGTCTCGCGCTTGGTATCCGACGA
CCAGATCCAGATGGGCACGATAGAGTTCGACACCGGGTTCGCGAACGTGT
TGGTAGTTTACCGCGCTATCTGCTTCCGGCCGTTCGTGAACGAGGTGCTC
GATGCCGCCGTGAGCCACGTGACCGAGCTCGGGTTCTTCGCGGAAGTCGG
GCCCCTCGAGGTTTTCGTCTCGCGCTTGGGCATGCCGGACGACATCGCGG
GGGGTTACGATCCGGTTGGGGACATGTGGGTATCCTCCGAGGATTCGGAT
ACGGAGATCAAGTCCGGCTGCGGGGTACGGCTGCGCATCATCGGAGTCAC
TGTTGGGGCAGAGTTGGGCATGCCGGACGACATCGCGGGGGGTTACGATC
CGGTTGGGGACATGTGGGTATCCTCCGAGGATTCGGATACGGAGATCAAG
TCCGGCTGCGGGGTACGGCTGCGCATCATCGGAGTCACTGTTGGGGCAGA
GTTGAAAGCGGTGGGCAGCATTAAGGACGACTTTCTGGGACTTGTGTCTG
GACCGGTATAGAAAGCGGTGGGCAGCATTAAGGACGACTTTCTGGGACTT
GTGTCTGGACCGGTATAG
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