mRNA_Ecto-sp9_F_contig107.621.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig107.621.1
Unique NamemRNA_Ecto-sp9_F_contig107.621.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: SET (translocation n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX59_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 6.150e-177
Identity = 296/322 (91.93%), Postives = 296/322 (91.93%), Query Frame = 1 
Query:    1 MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSVVNWKDTDESRDLQSCLLWNLDPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFDAEAPEEEEEGGAAAQPEGDGEGGEYDGGVNQIGDGLEEGGGDTIVDEG 966
            MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKV        PYISDGDQLALSYLEAVAVHKATPTAAA XXXXXXXXXXXXXXXXXXXXXXXXXXX     GGEG KLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSVVNWKDTDESRDLQSCLLWNLDPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFDAEA E        AQPEGDGEGGEYD GVNQIG GLEEGGGDTIVDEG
Sbjct:    1 MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKV--------PYISDGDQLALSYLEAVAVHKATPTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGGKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSVVNWKDTDESRDLQSCLLWNLDPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFDAEASEXXXXXXXXAQPEGDGEGGEYDSGVNQIGGGLEEGGGDTIVDEG 314
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Protein (set isoform 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBP8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.480e-34
Identity = 92/247 (37.25%), Postives = 130/247 (52.63%), Query Frame = 1 
Query:  115 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGE----GEKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSV--VNWKDTDESRDLQSCLLWNL---DPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFDAE 828
            ++A++ VQ ELN+LE  + Q +  + K + + K+P+Y +RQEAI QVP+FW KVLLAHP    +ISD DQ AL +L AV V   T                                   ES GG+    G  L D     +RV F F  N +F NS LW+E+   +++A+ S   V WKDT ES+ LQ  L+ +L   DP      PSFFSIF  +  D E+G+ L+ ++  +P+ IY+  DF+ E
Sbjct:   53 VKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERL-------------------------DGAREEESEGGQEQGGGRILPD-----YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEE 269
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D956_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.190e-22
Identity = 76/206 (36.89%), Postives = 101/206 (49.03%), Query Frame = 1 
Query:  238 EAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGE----GEKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSV--VNWKDTDESRDLQSCLLWNL---DPALHEETPSFFSIFGDDMEDYELGEALRGDITDNPLDIYMRHDFDAE 828
            +AIA VP+FW KVLLAHP    +ISD DQ AL +L AV V   T                                   ES GG+    G  L D     +RV F F  N +F NS LW+E+   +++A+ S   V WKDT ES  LQ  L+ +L   DP      PSFFSIF  +  D E+G+ L+ ++  +P+ IY+  DF+ E
Sbjct:   54 KAIATVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERL-------------------------DGAREEESEGGQEQGGGRILPD-----YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESEGLQEILVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLKEEVWRDPVGIYLSADFEEE 229
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Uncharacterized (protein n=5 Tax=Platyrrhini TaxID=9479 RepID=A0A2K6SAC3_SAIBB)

HSP 1 Score: 89.0 bits (219), Expect = 1.000e-16
Identity = 68/254 (26.77%), Postives = 113/254 (44.49%), Query Frame = 1 
Query:  115 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWREW---EPADEKASFSVVNWKDTDESRDLQSCLLWNLDPAL----HEETPSFFSIFGD--DMEDYELGEALRGDITDNPLDIYMRHDFDAEAPEEEEE 849
            +E +  VQ+E++ L E+ ++++L V + + + ++P + KR E IA++P+FW+   + HP     + + D+ AL YL                                              +G E  + +D    G+++ F F ENP+F N  + RE+   E  D  ++ + + WK     +DL        + A+    HEE  SFF+ F D  D    +LGE ++ DI  NPL  Y+  D D E   E EE
Sbjct:   39 IENIDEVQNEIDRLNEQASEEILKVEQKYNRLRQPFFQKRSELIAKIPNFWVTTFVNHPQISTLLGEEDEEALHYL----------------------------------------------IGVEVTEFEDIIKSGYKIDFHFDENPYFENKVISREFHLNESGDPSSTSTEIKWKS---GKDLTKRSSQRQNIAIRKRKHEEPESFFTWFKDHSDAGADDLGEVIKDDIWQNPLQYYLVPDMDDEEEGEGEE 243
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: CTP (synthase 2-like isoform X1 n=1 Tax=Cebus imitator TaxID=2715852 RepID=UPI00080A5201)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-15
Identity = 68/254 (26.77%), Postives = 112/254 (44.09%), Query Frame = 1 
Query:  115 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWREW---EPADEKASFSVVNWKDTDESRDLQSCLLWNLDPAL----HEETPSFFSIFGD--DMEDYELGEALRGDITDNPLDIYMRHDFDAEAPEEEEE 849
            +E +  VQ+E++ L E+ ++++L V + + + ++P + KR E IA++P+FW+   + HP     + + D+ AL YL                                              +G E  + +D    G+++ F F ENP+F N  + RE+   E  D  ++ + + WK     +DL        + A     HEE  SFF+ F D  D    +LGE ++ DI  NPL  Y+  D D E   E EE
Sbjct:  411 IENIDEVQNEIDRLNEQASEEILKVEQKYNRLRQPFFQKRSELIAKIPNFWVTTFVNHPQISTLLGEEDEEALHYL----------------------------------------------IGVEVTEFEDIIKSGYKIDFHFDENPYFENKVISREFHLNESGDPSSTSTEIKWKF---GKDLTKRSSQKQNKASRKRKHEEPESFFTWFKDNSDAGADDLGEVIKDDIWQNPLQYYLVPDMDDEEEGEGEE 615
[Close]
BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: CTP (synthase n=12 Tax=Platyrrhini TaxID=9479 RepID=A0A6J3IIM7_SAPAP)

HSP 1 Score: 87.0 bits (214), Expect = 3.490e-15
Identity = 68/254 (26.77%), Postives = 112/254 (44.09%), Query Frame = 1 
Query:  115 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWREW---EPADEKASFSVVNWKDTDESRDLQSCLLWNLDPAL----HEETPSFFSIFGD--DMEDYELGEALRGDITDNPLDIYMRHDFDAEAPEEEEE 849
            +E +  VQ+E++ L E+ ++++L V + + + ++P + KR E IA++P+FW+   + HP     + + D+ AL YL                                              +G E  + +D    G+++ F F ENP+F N  + RE+   E  D  ++ + + WK     +DL        + A     HEE  SFF+ F D  D    +LGE ++ DI  NPL  Y+  D D E   E EE
Sbjct:  633 IENIDEVQNEIDRLNEQASEEILKVEQKYNRLRQPFFQKRSELIAKIPNFWVTTFVNHPQISTLLGEEDEEALHYL----------------------------------------------IGVEVTEFEDIIKSGYKIDFHFDENPYFENKVISREFHLNESGDPSSTSTEIKWKF---GKDLTKRSSQKQNKASRKRKHEEPDSFFTWFKDNSDAGADDLGEVIKDDIWQNPLQYYLVPDMDDEEEGEGEE 837
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMP4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.860e-11
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = 1 
Query:   13 LLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAVHKATPTAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWRE 588
            +   P  KRQR     D N  +P   E +Q  + L +V+ V++EL  +  E+A+++L++   +  +KRP Y+KR   + ++P FW +VL+ HPL   YI+  D++ + +LE   V                                         VG         DD  F++  TF+ENP+FS + LW++
Sbjct:    1 MTGPPSPKRQRT----DDN--KPDEKEMEQVQKVLNSVAKVEEELEKVNVEQAKEILVIETKYNAKKRPTYVKRNNLLVEIPQFWKQVLVNHPLVGNYITKDDEMLMDFLEKFDV---------------------------------------TFVG---------DDGSFKMEMTFKENPYFSPTTLWKQ 138
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Protein (SET n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AD51_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 8.270e-11
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   16 LSEPPAKRQRAQ-GEGDGNADRP--GLAEEDQEFQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAV 357
            ++EP  KRQRA+ G+GD   D P  G      +   +  + + Q  L+ + +E + +VL V + + K++RP+Y +R E I +VP FW +VLLAHP+   ++SD D   L+YL  + V
Sbjct:    1 MAEPSPKRQRAEDGDGDVALDEPLEGDVLPGPDAHLVVELEDCQKALDKVNDEASDRVLAVEQEYNKKRRPIYTQRAEIINKVPQFWQRVLLAHPILADHLSDDDNAVLAYLTELDV 117
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: NAP1-related (protein 1-like isoform X1 n=4 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D161D)

HSP 1 Score: 68.6 bits (166), Expect = 9.920e-10
Identity = 32/81 (39.51%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:  115 LEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAV 357
            LE + + Q+EL+ + EE + +VL V + + + +RP+Y++R E I+ +PDFWL  LL+HP     +S+ DQ+   YL+A+ V
Sbjct:   34 LEKLQDFQNELDKVNEEASDKVLEVERKYNEIRRPVYVRRNEIISSIPDFWLTALLSHPSLCDLLSEEDQMIFKYLDALDV 114
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BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Match: Uncharacterized (protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LYJ7_ORYBR)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-9
Identity = 29/84 (34.52%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:  106 FQRLEAVSNVQDELNALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQPYISDGDQLALSYLEAVAV 357
             Q +E +  +QDE+  + EE   +VL + + + + +RP+Y++R E I Q+PDFWL   L+HP+    +++ DQ    +LE++ V
Sbjct:   26 LQSIEKLQEIQDEIEKVNEEACDKVLELEQKYNEVRRPVYVRRNEIIKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDV 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig107.621.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SET6.150e-17791.93translocation n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
Protein5.480e-3437.25set isoform 2 n=2 Tax=Nannochloropsis gaditana Tax... [more]
Uncharacterized2.190e-2236.89protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Uncharacterized1.000e-1626.77protein n=5 Tax=Platyrrhini TaxID=9479 RepID=A0A2K... [more]
CTP3.080e-1526.77synthase 2-like isoform X1 n=1 Tax=Cebus imitator ... [more]
CTP3.490e-1526.77synthase n=12 Tax=Platyrrhini TaxID=9479 RepID=A0A... [more]
Uncharacterized3.860e-1127.08protein n=1 Tax=Phytophthora megakarya TaxID=4795 ... [more]
Protein8.270e-1136.75SET n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=... [more]
NAP1-related9.920e-1039.51protein 1-like isoform X1 n=4 Tax=Olea europaea va... [more]
Uncharacterized2.740e-934.52protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig107contigEcto-sp9_F_contig107:37385..42369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score506.5
Seed ortholog evalue9e-141
Seed eggNOG ortholog2880.D7FX59
Preferred nameHSF5
KEGG rclassRC00010,RC00074
KEGG koko:K01937,ko:K05621,ko:K06071,ko:K11284,ko:K11285,ko:K11286,ko:K11287,ko:K11288,ko:K11289,ko:K11290,ko:K15413
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,ko04151,ko05132,ko05168,ko05203,map00240,map01100,map04151,map05132,map05168,map05203
KEGG ModuleM00052
GOsGO:0000182,GO:0000228,GO:0000726,GO:0000775,GO:0000785,GO:0000790,GO:0000981,GO:0001558,GO:0001672,GO:0001932,GO:0003158,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0004857,GO:0004864,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0005811,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006302,GO:0006303,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006986,GO:0006996,GO:0007154,GO:0007165,GO:0008047,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010698,GO:0010847,GO:0010921,GO:0010923,GO:0010941,GO:0012505,GO:0016043,GO:0019208,GO:0019212,GO:0019219,GO:0019220,GO:0019222,GO:0019888,GO:0019899,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030234,GO:0030308,GO:0030855,GO:0030968,GO:0031056,GO:0031057,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031333,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032502,GO:0032515,GO:0032984,GO:0032986,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034506,GO:0034620,GO:0034622,GO:0034641,GO:0034645,GO:0034728,GO:0034976,GO:0035065,GO:0035066,GO:0035067,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0035966,GO:0035967,GO:0036498,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042393,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043487,GO:0043488,GO:0043523,GO:0043524,GO:0043549,GO:0043565,GO:0043666,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045446,GO:0045786,GO:0045798,GO:0045859,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046662,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051346,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0060255,GO:0060429,GO:0060548,GO:0061013,GO:0061638,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071214,GO:0071310,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090230,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0104004,GO:0140110,GO:1900049,GO:1900050,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1901576,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903097,GO:1903098,GO:1903311,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1904834,GO:1905268,GO:1905269,GO:1905783,GO:1990837,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.nucleosome assembly
EggNOG OGsKOG1508@1,KOG1508@2759
EC2.3.2.13,2.7.11.13,6.3.4.2
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size969
Cds size969
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928289.2151382-CDS-Ecto-sp9_F_contig107:37384..375431622928289.2151382-CDS-Ecto-sp9_F_contig107:37384..37543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 37385..37543 -
1692277822.8928993-CDS-Ecto-sp9_F_contig107:37384..375431692277822.8928993-CDS-Ecto-sp9_F_contig107:37384..37543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 37385..37543 -
1622928289.2383337-CDS-Ecto-sp9_F_contig107:37899..379861622928289.2383337-CDS-Ecto-sp9_F_contig107:37899..37986Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 37900..37986 -
1692277822.9087706-CDS-Ecto-sp9_F_contig107:37899..379861692277822.9087706-CDS-Ecto-sp9_F_contig107:37899..37986Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 37900..37986 -
1622928289.253585-CDS-Ecto-sp9_F_contig107:38366..384801622928289.253585-CDS-Ecto-sp9_F_contig107:38366..38480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 38367..38480 -
1692277822.9190285-CDS-Ecto-sp9_F_contig107:38366..384801692277822.9190285-CDS-Ecto-sp9_F_contig107:38366..38480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 38367..38480 -
1622928289.2684524-CDS-Ecto-sp9_F_contig107:39111..391801622928289.2684524-CDS-Ecto-sp9_F_contig107:39111..39180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 39112..39180 -
1692277822.9285827-CDS-Ecto-sp9_F_contig107:39111..391801692277822.9285827-CDS-Ecto-sp9_F_contig107:39111..39180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 39112..39180 -
1622928289.285534-CDS-Ecto-sp9_F_contig107:40615..408791622928289.285534-CDS-Ecto-sp9_F_contig107:40615..40879Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 40616..40879 -
1692277822.9374402-CDS-Ecto-sp9_F_contig107:40615..408791692277822.9374402-CDS-Ecto-sp9_F_contig107:40615..40879Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 40616..40879 -
1622928289.2962472-CDS-Ecto-sp9_F_contig107:41325..414241622928289.2962472-CDS-Ecto-sp9_F_contig107:41325..41424Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 41326..41424 -
1692277822.9482517-CDS-Ecto-sp9_F_contig107:41325..414241692277822.9482517-CDS-Ecto-sp9_F_contig107:41325..41424Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 41326..41424 -
1622928289.3089552-CDS-Ecto-sp9_F_contig107:42192..423691622928289.3089552-CDS-Ecto-sp9_F_contig107:42192..42369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 42193..42369 -
1692277822.9583268-CDS-Ecto-sp9_F_contig107:42192..423691692277822.9583268-CDS-Ecto-sp9_F_contig107:42192..42369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig107 42193..42369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig107.621.1prot_Ecto-sp9_F_contig107.621.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig107 37385..42369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig107.621.1

>prot_Ecto-sp9_F_contig107.621.1 ID=prot_Ecto-sp9_F_contig107.621.1|Name=mRNA_Ecto-sp9_F_contig107.621.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=323bp
MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELN
ALEEEEAQQVLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKVLLAHPLTQ
PYISDGDQLALSYLEAVAVHKATPTAAAVAASGAAAGAADGDKGRKSGAS
EEEKEEVSESVGGEGEKLDDDDDVGFRVTFTFRENPFFSNSELWREWEPA
DEKASFSVVNWKDTDESRDLQSCLLWNLDPALHEETPSFFSIFGDDMEDY
ELGEALRGDITDNPLDIYMRHDFDAEAPEEEEEGGAAAQPEGDGEGGEYD
GGVNQIGDGLEEGGGDTIVDEG*
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mRNA from alignment at Ecto-sp9_F_contig107:37385..42369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig107.621.1 ID=mRNA_Ecto-sp9_F_contig107.621.1|Name=mRNA_Ecto-sp9_F_contig107.621.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4985bp|location=Sequence derived from alignment at Ecto-sp9_F_contig107:37385..42369- (Ectocarpus species9 EcSCA_722f female)
ATGTCTCGTGCGTTGCTGTCCGAACCTCCAGCCAAAAGGCAACGTGCCCA
AGGGGAGGGTGACGGAAACGCCGATAGGCCGGGCTTGGCGGAAGAAGACC
AAGAATTTCAGCGTTTGGAAGCGGTATCAAATGTCCAGGACGAGCTAAAC
GCTCTGGAAGAGGAGGAGGCTCAGCAGGTGTGTTTGCTACAGGGTGACAA
AGAAGAGCGTTTAGCTGCAGCAGGAGGCCAAGAGGCCGCCCGTGCTGGCT
GCTGATATTACAGCTGGTGCTTGCGGCAGTTGCTGCCGATGTCAATACGG
AGGTGCTCTCGCCTGTACCTCGACTCAAAGTGGATCCCGTGCAGGAAGAC
ATGTTTCCTACCGTTCAAGTAGATCTACAAGCACCGACATGTGGCAGAGG
GGCGCCTGCTGTGCCGATCGTCACACCCTAGCAACAACAATGCTGGGTCC
ACGCAACACTCATTTGCGTCATGGTCCATCTTGTTGCGTTTGTTCAGAGT
TTTTCGGGTGGTCGGCGACAGCCTCTCTTCCATGAAAACAGAACATGGAA
TATCCCGCACCTCCTCCCGTCCCCTCCCCATTACGTACTGTATGCATTGG
CACGTCCACACCTGGCTGGAGGACACTTTGTTACCTACCGCGTGTTCCAA
GCGTTTCACTGACCCCACTCGCGAACCCTTTCGCGTACTGTGATTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTGACATTGAAACCGT
TGCGGTCTCCCCTCAGTCCCTTCTAATGTCGTTGCTGGTTCAAAGGACTC
GGACGCCTTCAGACATGATTGCTAGGTATTTCCCCCGCTCGGTGCTCTCG
TATGCATGCCTGTCCTTCTGAGCGTGGCTGAAGTTTGTGCCCGCCAATCA
CCTACCGCGACTTGCCGGTTTGGGGCCGCGGTGTTTCTCAACAAGGTGCT
GCTTGTTCACAAGGCGTTTCTGAAGCGCAAGCGTCCGCTGTACATCAAGC
GGCAAGAGGCAATCGCGCAAGTGCCAGATTTCTGGCTGAAAGTGGTGAGG
GTTTGGTTGCTACAACATTGCTAAGTACTGTAGGTATCGACACATCGTTC
CGCGCCCCCCACAGAACCCGACAACGGCTTGCGAAGGGACGAACAGGCTG
GATCGCCTGGTCGCTGTAAGAAACGAAGACAGGATGCATCTCAAGCTGCT
GGAAACTTGCACTGCTGTTCTCCAGCTTTTGCCATTGCGACTTGCTGGCG
TCCGCTGGGGTGCGGGCTTTGTACTGTTTGTTTGTTGTGACACGGCTGAT
TTCTAACGCTGTGAAGAACGAGATGTAGCGGCACATTGACGCGAAGAGGG
TTTTGTCGTTTCCCTTCTTGCCCGTTTTCCCACCCCATCCACACCGTTTG
TCCCCCAAATACAAGCTTGCCCTTTTTCGCTTGCCTCTCTTCGTCTACAC
CTTGTCCTCCTTCCTCCTCCCCCCTCGCCCCACTCCCAAGCTCCTCGCGC
ACCCTTTGACTCAGCCGTACATATCTGACGGCGATCAGCTCGCGCTATCG
TACCTCGAAGCAGTGGCTGTCCACAAAGCTACCCCTACAGCTGCGGCGGT
GGCAGCGTCGGGGGCAGCAGCGGGAGCAGCGGACGGTGACAAGGGACGGA
AGTCAGGTGCATCGGAGGAGGAGAAAGAGGAGGTGTCGGAGAGTGTCGGA
GGGGAGGGGGAGAAGCTCGACGATGACGACGACGTGGGGTTCCGGGTGAC
CTTCGTGAGTGAGGCGATACGGCCGGACGTAAGATGGACAAGCCACTTGC
CATCATATGTGCGGCACGCCTCTTGTTTATCGTCCTCTGTGTGTTTGTGT
GTTTATTATTTGCTTCGACCGCGCGAACCGGCTGACCAATGAAAAGACGT
CAGTCTCAGTGCGGTTGAAAACACAAAACACTTCTAATGCCATAAACTGG
GACCCCGTGAGGGGGCGGCATGGGAGAGACTAACCTATTCTCCGGATCAA
AGACAGAAACGGTAGCAACAGAAGAAAACTGCACACATCTACGAAGACTG
CTACTTTGCACTCGATTCCGTTTTGGAGTGCGTTCACCGTCATTCCTTCC
AACCCTATCGTTCTCATGGTCGATTTCACAGCAACTTGTCGACATTTCGC
CTCTAGCCCTGCGTCGTTTGTGGTGGGGAAGGTCATCTGGCTCGAAGCTC
TTTCTCTCTTCCACGCCATTATCCCCTCCTCGACTGCTTCTCTGGTCTCT
GTCTTGTCCTCCTCCCGTTCCCTCTCCTCCTCCTTCATCGCTGCCAAAGG
AATCCCCCTCATTGCCATCCTGGTCGTTTCTATCTGCACTACTGTCGAGA
TCCCAACCTATTGGCCGTCGTGGAAACTGATCAACAAGTAGTCGATGGCG
TTTAAAAACATAACGAGTTCGTACGGATAGAAAACGAGCGAGCTCGAAGG
TAAACCGTCTCCGAATCCTATTGGTATGAAAAGCCTTTAGGCGAAGCAAG
GCTGTTTCGTCGTCGAAATTACCCTTGCAAAAGGCTTCATAAGCCAAGTG
GTTGGCGATGGCTACGATAAGTCGATTTATGCCTCTGCCAAGACCACCAT
TCGTTGAAAAAACAGCAGTAAGGAGGGTAGATCTAGACGGGTTGAAAGTT
CCCGCATAATGATNNNNNNNNNNGCTGCGGATGGGTTGACGATTGTTACG
TCTATAAGAATGGACTTGGTGCAGAGTTCCTCTTCTTTATCTCCTGCATG
CAATCCTGGGGGGATCACCAAATCCATCTTGTAGAGCCCTTTTCCCCTAC
CAGTGTCTGTCGTAAAAGGGGAAGAATCTTCCACTGCAATAGGCATGTGG
CATTCGCGCAATGTCTTTATTATCACGCGAACCATCCTGTTGTTCAGGAA
GGTCGAGGCACCGGTTTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
TGTCGGCCCGTCTGTCTGTCTGTCCTTGAGAAAAGTTAATATGCCACCCG
GTAGTGGCCCCGGACGCGGTCCAATCAATGGTATTGCCACCAGTTGGACC
GTTCCCCGATTCACACCCTCGTCGGTGGCCTCAACCTTCCCATGTCTTAA
TCGCAGACACACTGTCTCCTTGACAAACCCATGTACCCCACCCTCCACCT
TCATTCGTTGATCGTCGATCCTGCGTCCGACGCACGCAGACTTTCCGAGA
AAACCCGTTCTTCTCTAACTCGGAGCTCTGGCGAGAATGGGAGCCCGCTG
ACGAGAAGGTGGGAACTGCGTCAACGCGTTAGCGCCACAGCAGCCCAATT
CTGCGAGAATATGAAAAATATGTAGTGCCGTCGGTCGTTGCTGACGGGGC
GGGGGCCGAGCTTTGTGTCCGTCGTGCACATCGCAGCTCACCTACCCCGC
GATTGGATTTATCTCCCTCCCCGGTGCTCTCTGGCTCTCGTGTTTTCCGA
CGTTGGCTCTACCTGCCCGCATGGTCCCACGGGTCATGATGTAACGCTTG
CCGTAACGAACGCCTTGCACGTGTGAGTCATACGTTTATTTTTGCTCACA
GTCGTGCCGGACTGGACAACGTGGGGCAATGCGGAGATGCGTAGCTCCGG
AGAGGGCGGCACTGTTTTCTATGTCCTGCCCACAGACGCCCGCTTGATTA
GCGATCCGCCAACGTTAGCAGCCCGTCAATGACGGCAGTAGGCGTGCCCA
CCCATTCCTGAGGTGCTAGAGTTTGAAGCATGACGGGCAACAGTGCCACC
TACAAGTCAAAAGCAGACATTTCAATCCCATGTGCGTGCTTTCATCGAAA
TGTTGCGAGGTTTCGCGCACCTTGGGAATCCTCGCGTATCCCAATTTACA
CAACTCTCCCTCTCTCTCTGTCTCTCTCTATAATCCCAGGCGTCGTTTTC
GGTGGTGAACTGGAAGGACACAGACGAATCCAGGGATCTGCAGTCCTGCC
TGCTCTGGAACCTTGACCCCGCGCTGCACGAGGAGACGCCGTCCTTTTTC
TCCGTGCGTGCGTTTTTTTTGTTTGCTGTTGTTGGTGTTGTTGGTGTTGG
TGGTGTTGGTGTCGGTGTTGGTATAGGTGGTGGTGGTGGTGGTGGTGGTG
GTCTTGCTGTTGTTGCTGCTGCTGCTGCTGCCATCTCATGCTGCTGCCGC
AGCTGCTTCTGCTTGTTGCTGTTGTTGTCGGCACTGCCGCTGTTGTTGGT
GTTCATCACGTACACCTCACTGTCTTTTCTCTTGAAGATAGTCCATGGTC
TTGTCGACGATGACGCCACTGCTGTGCGGCACACACGTTGTCCGACTTCG
TTCCGAACTGTTGCTGCTGCTGTTTTTCCGCGTGCGCCCGTCCTCCCTTG
TCTGTTTGATTCGTTGATTGGGTGGGGAGACAGATTTTCGGCGACGACAT
GGAGGATTACGAGCTTGGAGAGGCGCTGCGAGGAGACATCACGGACAACC
CGCTCGACATCTACATGCGGGTAAGGAACGGCCACTGCTGTGTACGACGG
TTTACTCCCTCACGGTGCCAGAGAACGAAGGTGTCGCCGCACACATACTC
GTGGGGTACAGATTTTCTTTGGGTTGTTGAATGACTCGTAACACCCTTAA
CTTTTCAACGAGCAGTAGCGGACAGTTCGATTTAGGCGAATAGTACCGGG
ACGCTTGCTTGAGGCCTGAGGTGTTGTATCGCCACCCTCACCTTGCCGAC
GGCAGAAGCAGCAGCAGCAGAAGCAGCACCAGCACCAGCAGCCTTGGCCG
TTCCGCCGTCTTGCTCTTGTCTCACCCCTCAACCCCGCCTATTCATTCCG
CTATCTGGTACGGTATACCGTACCAGCACGACTTCGACGCAGAAGCACCA
GAGGAGGAAGAGGAAGGCGGAGCCGCGGCGCAGCCCGAGGGAGACGGGGA
GGGAGGAGAGTATGATGGTGGTGTCAACCAAATCGGCGACGGGTTGGAGG
AGGGCGGAGGAGACACGATTGTCGATGAAGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig107:37385..42369-

>mRNA_Ecto-sp9_F_contig107.621.1 ID=mRNA_Ecto-sp9_F_contig107.621.1|Name=mRNA_Ecto-sp9_F_contig107.621.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1938bp|location=Sequence derived from alignment at Ecto-sp9_F_contig107:37385..42369- (Ectocarpus species9 EcSCA_722f female)
ATGTCTCGTGCGTTGCTGTCCGAACCTCCAGCCAAAAGGCAACGTGCCCA
AGGGGAGGGTGACGGAAACGCCGATAGGCCGGGCTTGGCGGAAGAAGACC
AAGAATTTCAGCGTTTGGAAGCGGTATCAAATGTCCAGGACGAGCTAAAC
GCTCTGGAAGAGGAGGAGGCTCAGCAGATGTCTCGTGCGTTGCTGTCCGA
ACCTCCAGCCAAAAGGCAACGTGCCCAAGGGGAGGGTGACGGAAACGCCG
ATAGGCCGGGCTTGGCGGAAGAAGACCAAGAATTTCAGCGTTTGGAAGCG
GTATCAAATGTCCAGGACGAGCTAAACGCTCTGGAAGAGGAGGAGGCTCA
GCAGGTGCTGCTTGTTCACAAGGCGTTTCTGAAGCGCAAGCGTCCGCTGT
ACATCAAGCGGCAAGAGGCAATCGCGCAAGTGCCAGATTTCTGGCTGAAA
GTGGTGCTGCTTGTTCACAAGGCGTTTCTGAAGCGCAAGCGTCCGCTGTA
CATCAAGCGGCAAGAGGCAATCGCGCAAGTGCCAGATTTCTGGCTGAAAG
TGCTCCTCGCGCACCCTTTGACTCAGCCGTACATATCTGACGGCGATCAG
CTCGCGCTATCGTACCTCGAAGCAGTGGCTGTCCACAAAGCTACCCCTAC
AGCTGCGGCGGTGGCAGCGTCGGGGGCAGCAGCGGGAGCAGCGGACGGTG
ACAAGGGACGGAAGTCAGGTGCATCGGAGGAGGAGAAAGAGGAGGTGTCG
GAGAGTGTCGGAGGGGAGGGGGAGAAGCTCGACGATGACGACGACGTGGG
GTTCCGGGTGACCTTCCTCCTCGCGCACCCTTTGACTCAGCCGTACATAT
CTGACGGCGATCAGCTCGCGCTATCGTACCTCGAAGCAGTGGCTGTCCAC
AAAGCTACCCCTACAGCTGCGGCGGTGGCAGCGTCGGGGGCAGCAGCGGG
AGCAGCGGACGGTGACAAGGGACGGAAGTCAGGTGCATCGGAGGAGGAGA
AAGAGGAGGTGTCGGAGAGTGTCGGAGGGGAGGGGGAGAAGCTCGACGAT
GACGACGACGTGGGGTTCCGGGTGACCTTCACTTTCCGAGAAAACCCGTT
CTTCTCTAACTCGGAGCTCTGGCGAGAATGGGAGCCCGCTGACGAGAAGA
CTTTCCGAGAAAACCCGTTCTTCTCTAACTCGGAGCTCTGGCGAGAATGG
GAGCCCGCTGACGAGAAGGCGTCGTTTTCGGTGGTGAACTGGAAGGACAC
AGACGAATCCAGGGATCTGCAGTCCTGCCTGCTCTGGAACCTTGACCCCG
CGCTGCACGAGGAGACGCCGTCCTTTTTCTCCGCGTCGTTTTCGGTGGTG
AACTGGAAGGACACAGACGAATCCAGGGATCTGCAGTCCTGCCTGCTCTG
GAACCTTGACCCCGCGCTGCACGAGGAGACGCCGTCCTTTTTCTCCATTT
TCGGCGACGACATGGAGGATTACGAGCTTGGAGAGGCGCTGCGAGGAGAC
ATCACGGACAACCCGCTCGACATCTACATGCGGATTTTCGGCGACGACAT
GGAGGATTACGAGCTTGGAGAGGCGCTGCGAGGAGACATCACGGACAACC
CGCTCGACATCTACATGCGGCACGACTTCGACGCAGAAGCACCAGAGGAG
GAAGAGGAAGGCGGAGCCGCGGCGCAGCCCGAGGGAGACGGGGAGGGAGG
AGAGTATGATGGTGGTGTCAACCAAATCGGCGACGGGTTGGAGGAGGGCG
GAGGAGACACGATTGTCGATGAAGGATGACACGACTTCGACGCAGAAGCA
CCAGAGGAGGAAGAGGAAGGCGGAGCCGCGGCGCAGCCCGAGGGAGACGG
GGAGGGAGGAGAGTATGATGGTGGTGTCAACCAAATCGGCGACGGGTTGG
AGGAGGGCGGAGGAGACACGATTGTCGATGAAGGATGA
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