mRNA_Ecto-sp9_F_contig10694.615.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10694.615.1
Unique NamemRNA_Ecto-sp9_F_contig10694.615.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10694.615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U0_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.560e-88
Identity = 153/181 (84.53%), Postives = 155/181 (85.64%), Query Frame = -1 
Query:    1 MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRTVHSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGALVVGTSGGARAAATAAAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDS 543
            MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDAS+DFRAQHNLALSEHGARGFADPAKLESTLR +HSRLARASA GDG                       SSRALTGALVVGTSGGARAAATA AGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDS
Sbjct:    1 MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASSDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASASGDGSNNYSDAEDDDASDQEQANASRRSSRALTGALVVGTSGGARAAATAVAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDS 181
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BLAST of mRNA_Ecto-sp9_F_contig10694.615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 2.220e-81
Identity = 175/181 (96.69%), Postives = 179/181 (98.90%), Query Frame = -1 
Query:    1 MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRTVHSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGALVVGTSGGARAAATAAAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDS 543
            MATQAL+SYTAGKYSEALSHLS+LSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLR +HSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTG LVVGTSGGARAAATAAAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLH+EPLDDS
Sbjct:    1 MATQALSSYTAGKYSEALSHLSSLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGTLVVGTSGGARAAATAAAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHMEPLDDS 181
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BLAST of mRNA_Ecto-sp9_F_contig10694.615.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-16
Identity = 72/184 (39.13%), Postives = 95/184 (51.63%), Query Frame = -1 
Query:    4 SSMATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRTVHSRL-ARASAGG-DGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGALVVGTSGGARAAATAAAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDD 549
            S +A QA   Y +G Y   L  LS L+     S +          D    HN A+ E+   GFA+  +  + LR V S+L ARAS G  DG                        + +L+ A   G      +AA+AA GLA+LD DASV+LYN++AL FQQ QYGAA+A+LE LFLHIEP+D+
Sbjct:   18 SELAAQAHELYNSGDYDATLRLLSELAARHEPSDEE-------EEDLTLTHNTAICEYAKTGFAETQQFGAALRDVRSKLRARASMGSSDGTRATGAGDGGEDASG--------GAASLSTAYRQGIPF-TESAASAAEGLADLDTDASVVLYNMAALHFQQMQYGAARAILEHLFLHIEPVDE 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10694.615.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.560e-8884.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.220e-8196.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.070e-1639.13protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10694contigEcto-sp9_F_contig10694:2977..3534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928287.99239-CDS-Ecto-sp9_F_contig10694:2976..34981622928287.99239-CDS-Ecto-sp9_F_contig10694:2976..3498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10694 2977..3498 +
1692277822.3607647-CDS-Ecto-sp9_F_contig10694:2976..34981692277822.3607647-CDS-Ecto-sp9_F_contig10694:2976..3498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10694 2977..3498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928288.008181-UTR-Ecto-sp9_F_contig10694:3498..35341622928288.008181-UTR-Ecto-sp9_F_contig10694:3498..3534Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10694 3499..3534 +
1692277822.3702354-UTR-Ecto-sp9_F_contig10694:3498..35341692277822.3702354-UTR-Ecto-sp9_F_contig10694:3498..3534Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10694 3499..3534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10694.615.1prot_Ecto-sp9_F_contig10694.615.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10694 2977..3498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10694.615.1

>prot_Ecto-sp9_F_contig10694.615.1 ID=prot_Ecto-sp9_F_contig10694.615.1|Name=mRNA_Ecto-sp9_F_contig10694.615.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=174bp
AIVQGLDVQEQPLQHRLGGPVLLLLEAERAQVVEEDGGVDVELGQPGSRR
RRRPGPAGGTHHKRPGQGAAASPGSVGLLLVRGVVVLGVRVVVAAVAASA
CSGQAGVDGAERGLELGRVGEAAGAVLAQGEVVLGPEVIGGVGGRPAGVA
AAPWCNREVREVGEGLAVLSRGV*
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mRNA from alignment at Ecto-sp9_F_contig10694:2977..3534+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10694.615.1 ID=mRNA_Ecto-sp9_F_contig10694.615.1|Name=mRNA_Ecto-sp9_F_contig10694.615.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10694:2977..3534+ (Ectocarpus species9 EcSCA_722f female)
GCTATCGTCCAGGGGCTCGATGTGCAGGAACAGCCGCTCCAGCACCGCCT
GGGCGGCCCCGTACTGCTTCTGCTGGAAGCGGAGCGCGCTCAGGTTGTAG
AGGAGGACGGAGGCGTCGACGTCGAGCTCGGCCAGCCCGGCAGCCGCCGT
CGCCGCCGCCCTGGCCCCGCCGGAGGTACCCACCACAAGCGCCCCGGTCA
AGGCGCGGCTGCTTCGCCTGGAAGCGTTGGCTTGCTCCTGGTCCGAGGCG
TCGTCGTCCTCGGCGTCCGAGTTGTTGTTGCTGCCGTCGCCGCCAGCGCT
TGCTCTGGCCAGGCGGGAGTGGACGGTGCGGAGCGTGGACTCGAGCTTGG
CCGGGTCGGCGAAGCCGCGGGCGCCGTGCTCGCTCAGGGCGAGGTTGTGC
TGGGCCCGGAAGTCATTGGAGGCGTCGGAGGAAGACCCGCCGGCGTCGCC
GCTGCTCCCTGGTGCAACCGAGAGGTTAGAGAGGTGGGAGAGGGCCTCGC
TGTACTTTCCCGCGGTGTATGACGCAAGGGCTTGGGTAGCCATGCTACTA
GTGCAGTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10694:2977..3534+

>mRNA_Ecto-sp9_F_contig10694.615.1 ID=mRNA_Ecto-sp9_F_contig10694.615.1|Name=mRNA_Ecto-sp9_F_contig10694.615.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10694:2977..3534+ (Ectocarpus species9 EcSCA_722f female)
GCTATCGTCCAGGGGCTCGATGTGCAGGAACAGCCGCTCCAGCACCGCCT
GGGCGGCCCCGTACTGCTTCTGCTGGAAGCGGAGCGCGCTCAGGTTGTAG
AGGAGGACGGAGGCGTCGACGTCGAGCTCGGCCAGCCCGGCAGCCGCCGT
CGCCGCCGCCCTGGCCCCGCCGGAGGTACCCACCACAAGCGCCCCGGTCA
AGGCGCGGCTGCTTCGCCTGGAAGCGTTGGCTTGCTCCTGGTCCGAGGCG
TCGTCGTCCTCGGCGTCCGAGTTGTTGTTGCTGCCGTCGCCGCCAGCGCT
TGCTCTGGCCAGGCGGGAGTGGACGGTGCGGAGCGTGGACTCGAGCTTGG
CCGGGTCGGCGAAGCCGCGGGCGCCGTGCTCGCTCAGGGCGAGGTTGTGC
TGGGCCCGGAAGTCATTGGAGGCGTCGGAGGAAGACCCGCCGGCGTCGCC
GCTGCTCCCTGGTGCAACCGAGAGGTTAGAGAGGTGGGAGAGGGCCTCGC
TGTACTTTCCCGCGGTGTATGAGCTATCGTCCAGGGGCTCGATGTGCAGG
AACAGCCGCTCCAGCACCGCCTGGGCGGCCCCGTACTGCTTCTGCTGGAA
GCGGAGCGCGCTCAGGTTGTAGAGGAGGACGGAGGCGTCGACGTCGAGCT
CGGCCAGCCCGGCAGCCGCCGTCGCCGCCGCCCTGGCCCCGCCGGAGGTA
CCCACCACAAGCGCCCCGGTCAAGGCGCGGCTGCTTCGCCTGGAAGCGTT
GGCTTGCTCCTGGTCCGAGGCGTCGTCGTCCTCGGCGTCCGAGTTGTTGT
TGCTGCCGTCGCCGCCAGCGCTTGCTCTGGCCAGGCGGGAGTGGACGGTG
CGGAGCGTGGACTCGAGCTTGGCCGGGTCGGCGAAGCCGCGGGCGCCGTG
CTCGCTCAGGGCGAGGTTGTGCTGGGCCCGGAAGTCATTGGAGGCGTCGG
AGGAAGACCCGCCGGCGTCGCCGCTGCTCCCTGGTGCAACCGAGAGGTTA
GAGAGGTGGGAGAGGGCCTCGCTGTACTTTCCCGCGGTGTATGA
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