mRNA_Ecto-sp9_F_contig10689.610.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10689.610.1
Unique NamemRNA_Ecto-sp9_F_contig10689.610.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI36_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 7.250e-80
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
            FCQFAFPGQCSVLGVYQPELP+GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNS+RKG EHNVPYLAKYCFMSSYVTTLL  GYGFPAEEHIHFVDEVGGYKV
Sbjct:  352 FCQFAFPGQCSVLGVYQPELPQGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSLRKGREHNVPYLAKYCFMSSYVTTLLGGGYGFPAEEHIHFVDEVGGYKV 473          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.060e-78
Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKVRA 372
            FCQ AFPGQCS+LGVYQPELP+GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIV EGKRVC MS EELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLL DGYGFPAEE IHFVDEVGGYK  A
Sbjct:  300 FCQSAFPGQCSLLGVYQPELPQGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVSEGKRVCAMSHEELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLRDGYGFPAEERIHFVDEVGGYKFPA 423          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV38_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 1.360e-20
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELPK--GGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
            +C FA  G CS+ G+YQP+LP+   G  G F  FS YY +WQFL L ++ ++A++       C ++ + L ++ +     E+    L  YCF S+YV  LL +GYGF   + I  V  + G+KV
Sbjct:  434 WCDFAHQGDCSLAGIYQPDLPRQENGNFGEFLAFSNYYHVWQFLSLPDTASLAQLYNATSFACSLNHDNLVSFAAGSNIDENE---LDSYCFRSTYVFQLLHNGYGFGMNDTIRAVRVIDGHKV 554          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Hypothetical (protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWR8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-18
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELP-KGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
            +C F+  G CS+ GVYQP+LP K    G F  FS Y+ +W+FL L E  T+ ++    +  C ++ ++L  +   +   +     L  YCF S+YV  LL +GYGF   + I   + + G KV
Sbjct:  457 WCNFSHKGDCSLAGVYQPQLPTKSESFGEFIAFSNYHHVWKFLHLKERATIQQLYDATQHACSLNHDDLKVFARGKVEDDQ----LDSYCFRSAYVFQLLHNGYGFQMNDTIRVSNVINGKKV 575          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Nucleoside (phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.340e-15
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDL-DESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
            +C++A+ G+CS+ G+YQPELP       FY FSG+ + +  ++L  E  T+A+     + VC +  + L   N  R G       +   C+  +Y+ TLL+DGYGF  +  ++ V ++ GYKV
Sbjct:  398 WCEYAYNGECSMGGIYQPELPAAANRV-FYAFSGFRRAFDMMNLPSERLTLAQYREGAREVCSLDMQALLDRNE-RAGKPLLPNLVRAACYTVTYMVTLLADGYGFKDDFELNVVAKIDGYKV 518          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7S3X2_PHATC)

HSP 1 Score: 73.2 bits (178), Expect = 1.650e-12
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    1 FCQFAFPGQCSVLGVYQPELPKGG-EHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPY------LAKYCFMSSYVTTLLSDGYGFPAEEHIHFVDEVGGYKV 366
            +C F+    CS  G+YQP LP    + G F   S +Y +W FL L+E +TV E++                     +G  HN P       L +YCF +++V  L   G+GFP + HI  VD+V G K+
Sbjct:  389 WCNFSHDRDCSFAGIYQPPLPINEYDFGEFIATSNFYHVWDFLGLEERSTVDEVL---------------------EGARHNRPKPLSDDDLIQYCFRATFVAELFR-GWGFPGDYHITSVDQVNGLKL 495          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=2 Tax=Testudinoidea TaxID=8486 RepID=A0A8C0GV06_CHEAB)

HSP 1 Score: 62.4 bits (150), Expect = 9.170e-9
Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 1
Query:   28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKVRACSPVFL 390
            C   GVYQP       HG+F+ FSG+Y ++ FL+L     ++++    +  C    +E+   +        N   L  YC  S+Y+ TLL  GY F  +   +IHF  +VG    + C   ++
Sbjct:  332 CGFNGVYQPP-----GHGQFFAFSGFYSVFHFLNLTSGHPLSDVSATIEHFCAKDWKEVQMVDPGM-----NKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHRQVGHLPGKVCCAAWV 444          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Ectonucleoside (triphosphate diphosphohydrolase 8 n=17 Tax=Durocryptodira TaxID=1579337 RepID=A0A452I422_9SAUR)

HSP 1 Score: 61.2 bits (147), Expect = 2.460e-8
Identity = 36/115 (31.30%), Postives = 55/115 (47.83%), Query Frame = 1
Query:   28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKV 366
            C   GVYQP      EHG+F+ FSG+Y ++ FL+L     ++++    +  C    +E+   +        N   L  YC  S+Y+ TLL  GY F  +   +IHF  +V    V
Sbjct:  455 CGFNGVYQPP-----EHGQFFAFSGFYSVFHFLNLTSGHPLSDVSATIEHFCAKDWKEVQMVDPGM-----NKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHRQVAAVDV 559          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Ectonucleoside (triphosphate diphosphohydrolase 8-like n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674IUE2_TERCA)

HSP 1 Score: 59.7 bits (143), Expect = 6.900e-8
Identity = 36/115 (31.30%), Postives = 54/115 (46.96%), Query Frame = 1
Query:   28 CSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE--EHIHFVDEVGGYKV 366
            C   GVYQP      EHG F+ FSG+Y ++ FL+L     ++++    +  C    +E+   +        N   L  YC  S+Y+ TLL  GY F  +   +IHF  +V    V
Sbjct:  156 CGFNGVYQPP-----EHGHFFAFSGFYSVFHFLNLTSEHPLSDVSATIEHFCAKDWKEVQMVDP-----GVNKTRLQDYCAASTYILTLLLQGYKFDNQTWSNIHFHWQVAAVDV 260          
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Match: Uncharacterized (protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DAG2_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 8.100e-8
Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 1
Query:   13 AFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDES-TTVAEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLSDGYGFPAE 324
            A P  CS+ GVYQP +       +F  FSG+  +W FL L  + TT A++       CG S E     N           YLA +C  ++   TLL+ GYG PA+
Sbjct:  342 ASPLTCSIGGVYQPPV----NVTKFVAFSGFSYIWDFLKLAPAGTTPAQLAAAATTFCGTSWEHAKQQNP-----SEPEKYLAAFCATATLSHTLLTTGYGIPAQ 437          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10689.610.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.250e-8095.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.060e-7891.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Predicted1.360e-2037.10protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical1.970e-1834.96protein n=2 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Nucleoside3.340e-1534.15phosphatase family-domain-containing protein n=1 T... [more]
Predicted1.650e-1233.33protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Uncharacterized9.170e-929.27protein n=2 Tax=Testudinoidea TaxID=8486 RepID=A0A... [more]
Ectonucleoside2.460e-831.30triphosphate diphosphohydrolase 8 n=17 Tax=Durocry... [more]
Ectonucleoside6.900e-831.30triphosphate diphosphohydrolase 8-like n=1 Tax=Ter... [more]
Uncharacterized8.100e-835.24protein n=3 Tax=Cafeteria roenbergensis TaxID=3365... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10689contigEcto-sp9_F_contig10689:629..1892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue3.3e-65
Seed eggNOG ortholog2880.D7FI36
EggNOG free text desc.nucleoside-diphosphatase activity
EggNOG OGsCOG5371@1,KOG1386@2759
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928286.599638-CDS-Ecto-sp9_F_contig10689:628..9201622928286.599638-CDS-Ecto-sp9_F_contig10689:628..920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10689 629..920 -
1692277821.861253-CDS-Ecto-sp9_F_contig10689:628..9201692277821.861253-CDS-Ecto-sp9_F_contig10689:628..920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10689 629..920 -
1622928286.6189804-CDS-Ecto-sp9_F_contig10689:1791..18921622928286.6189804-CDS-Ecto-sp9_F_contig10689:1791..1892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10689 1792..1892 -
1692277821.871105-CDS-Ecto-sp9_F_contig10689:1791..18921692277821.871105-CDS-Ecto-sp9_F_contig10689:1791..1892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10689 1792..1892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10689.610.1prot_Ecto-sp9_F_contig10689.610.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10689 629..1892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10689.610.1

>prot_Ecto-sp9_F_contig10689.610.1 ID=prot_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=131bp
FCQFAFPGQCSVLGVYQPELPKGGEHGRFYGFSGYYKLWQFLDLDESTTV
AEIVGEGKRVCGMSREELSAYNSVRKGHEHNVPYLAKYCFMSSYVTTLLS
DGYGFPAEEHIHFVDEVGGYKVRACSPVFLW
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mRNA from alignment at Ecto-sp9_F_contig10689:629..1892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10689.610.1 ID=mRNA_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1264bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10689:629..1892- (Ectocarpus species9 EcSCA_722f female)
TTCTGCCAGTTTGCCTTCCCCGGGCAGTGCTCTGTCCTGGGCGTTTACCA GCCGGAGCTCCCCAAGGGTGGCGAGCACGGACGGTTCTACGGTTTCTCCG GGTGAGTGAGTGAGGGAATGAAGTGAGTGAGTCAGTGAGTGAGGGAATGA AGTGAGTGAGGCAGTGAGTGAGGGAATAACGTGAGTGAGGAAATGCAAGA TGTTGCCTGAATGAGTGCCTGCATGAGCGAGGAAATTAAAGAGAGTGTCT GACTGTCCGAGCGTCTGAGTGAGTGAGTGATTGAGCCTGTAATGTAAGTG AGGCAATGGTTGAGTGAATGAGCAAGTGAATGCCTGAAAAGTGAGTATGT GAGAATGTGAGGGATTGAGGGATTGTATGGCGGAACGAGTGAGGGTGTGA GTGAGTGAGAAAGTGAATGAGTGAATTTTCGAGTGAAGCGGTTGAGTGAA TTGTTGAGTATTTGGCTGCCTGAGTTCGAGTGACCGAAGTGTGCAGGAGA TTTCACCGAGGTTTGATGACCTGTGAATTTTGGGGGGGAACTTGATAATT TTTTCAAGGAAAATCGTGCTTTCGAAGAGCACGTTTTTCTGTGTTTCTTT TTTGAGGGTATGGGTTGGTCGTGACTCGGGCGTCATTGTTGTTACCCCCG CGCTATTGACGGTCTCGTCCGGAAGATCACCCTCTGCCCCGACATTTGGC GCTACGCGCCTCGCGCGAGGTTTTGGTGCTACTGGACAGGGGCGACCACA CGGCAGCCCGGCACTGTCGAACCCATCCATTTATTGCCGTCAAAGTGACC TCTTGAGGAAAAATTCCACATATTATCCTCAAGCACGTGTGCGCGCACCG CACCCTATTCGATGCCGAAGTCAATGAACATAGTTCACCTTCTCTCAGGA CCGCGTCATCCCCGTCCCCCCTTTCCGTAACGCTCCTCGCCCGTGGGCGA TTTCGATCCCTCTCCCCCCCAGGTACTACAAGCTGTGGCAGTTCCTCGAC CTAGACGAGTCGACGACGGTTGCAGAGATTGTCGGCGAGGGCAAGCGCGT GTGCGGCATGTCCCGCGAGGAGCTGTCCGCGTACAACTCCGTTCGCAAGG GCCACGAGCACAACGTCCCGTACCTGGCCAAGTACTGCTTCATGTCCTCC TACGTGACCACGCTGCTGAGCGACGGCTACGGCTTCCCGGCCGAGGAGCA CATTCACTTCGTCGACGAAGTGGGTGGCTACAAGGTGCGCGCGTGTTCGC CCGTTTTTTTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10689:629..1892-

>mRNA_Ecto-sp9_F_contig10689.610.1 ID=mRNA_Ecto-sp9_F_contig10689.610.1|Name=mRNA_Ecto-sp9_F_contig10689.610.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10689:629..1892- (Ectocarpus species9 EcSCA_722f female)
TTCTGCCAGTTTGCCTTCCCCGGGCAGTGCTCTGTCCTGGGCGTTTACCA
GCCGGAGCTCCCCAAGGGTGGCGAGCACGGACGGTTCTACGGTTTCTCCG
GTTCTGCCAGTTTGCCTTCCCCGGGCAGTGCTCTGTCCTGGGCGTTTACC
AGCCGGAGCTCCCCAAGGGTGGCGAGCACGGACGGTTCTACGGTTTCTCC
GGGTACTACAAGCTGTGGCAGTTCCTCGACCTAGACGAGTCGACGACGGT
TGCAGAGATTGTCGGCGAGGGCAAGCGCGTGTGCGGCATGTCCCGCGAGG
AGCTGTCCGCGTACAACTCCGTTCGCAAGGGCCACGAGCACAACGTCCCG
TACCTGGCCAAGTACTGCTTCATGTCCTCCTACGTGACCACGCTGCTGAG
CGACGGCTACGGCTTCCCGGCCGAGGAGCACATTCACTTCGTCGACGAAG
TGGGTGGCTACAAGGTGCGCGCGTGTTCGCCCGTTTTTTTGTGGGTACTA
CAAGCTGTGGCAGTTCCTCGACCTAGACGAGTCGACGACGGTTGCAGAGA
TTGTCGGCGAGGGCAAGCGCGTGTGCGGCATGTCCCGCGAGGAGCTGTCC
GCGTACAACTCCGTTCGCAAGGGCCACGAGCACAACGTCCCGTACCTGGC
CAAGTACTGCTTCATGTCCTCCTACGTGACCACGCTGCTGAGCGACGGCT
ACGGCTTCCCGGCCGAGGAGCACATTCACTTCGTCGACGAAGTGGGTGGC
TACAAGGTGCGCGCGTGTTCGCCCGTTTTTTTGTGG
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