mRNA_Ecto-sp9_F_contig1067.599.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE) HSP 1 Score: 366 bits (940), Expect = 1.970e-114 Identity = 435/585 (74.36%), Postives = 441/585 (75.38%), Query Frame = 1
Query: 334 GGIKCSNDIPGVESSDGMACCPAECGVCSTSCGVKRRLSSSDSGGDSSSSADSSDKNGPSCGTLKHRRRLSYGRDSSKXXXXXXXXXXXXXXXXXSDDSYDTPXXXXXXXXXXXXXXDSSKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRRSLSSGRDGSKDSSKDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRRSLSSGRDGSKDSSKDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDSRDGCNCGPSGYKRRALRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSSGGGGADSXXXXXXXXXXXXXXXXXXXXXXDGGRGXXXXXXXXXXXXGDNGYEEYCDCSLSGGYTPRYGDSSDSGGSSDSSDXGXXQCXXXXXXXXXLECCADTIVEDGEMCDIFGSAPCVLXXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASA 2088
GG KCSNDIPGVESSDGMACCPAECGVCSTSCG KRRLSSSDSGGDSSSSADSSDKNGPSCGTLKHRRRLS+GRD SK SSKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DDSYDTPKHRR LS GRDGSK SS DS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SDDSRDGC+CG SGYKRRALRSG XXXXXXX HSSSGG GADSXXXXXXXXXXXXXXXXXXXX D G G GD+GYEEYCDCSLSG Y+PRYGDSSDSGGSSD X XXQCXXXXX LECCADTIVED MCDIFGSAPCVL XXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGG GCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCV+D +A
Sbjct: 8 GGAKCSNDIPGVESSDGMACCPAECGVCSTSCGSKRRLSSSDSGGDSSSSADSSDKNGPSCGTLKHRRRLSFGRDGSKY---------------------------------------SSKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS--DDSYDTPKHRRRLSYGRDGSKGSSNDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKDSSDDSRDGCDCGLSGYKRRALRSGSSYSSDSRDASCNCDHGRHLWGGSGSNDXXXXXXXDHSSSGGRGADSXXXXXXXXXXXXXXXXXXXX--DSGSGD-----------GDDGYEEYCDCSLSGRYSPRYGDSSDSGGSSDXXXXXXXQCXXXXXPAPELECCADTIVEDDAMCDIFGSAPCVLGXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVIDGNA 529
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 242 bits (617), Expect = 5.040e-68 Identity = 354/595 (59.50%), Postives = 369/595 (62.02%), Query Frame = 1
Query: 334 GGIKCSNDIPGVESSDGMACCPAECGVCSTSCGVKRRLSSSDSGGDSSSSADSSDKNGPSCGTLKHRRRLSYGRDSSKXXXXXXXXXXXXXXXXXSDDSYDTPXXXXXXXXXXXXXXDSSKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRRSLSSGRDGSKDSSKDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DDSYDTPKHRRSLSSGRDGSKDSSKDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDSRDGCNCGPSGYKRRALRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSSGGGGADSXXXXXXXXXXXXXXXXXXXXXXDGGRGXXXXXXXXXXXXGDNGYEEYCDCSLSGGYTPRYGDSSDSG------------GSSDSSDXGXXQCXXXXXXXXXLECCADTIVEDGEMCDIFGSAPCVLXXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVD 2079
GG CS DIPGVESSDGMACCPAECGVCSTSCG KRRLSS DSGG SSSS CGTLKHRRRLSYGRDSSK XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRR LS GRDGSKDS+ XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX DDSYDTPKHRR LS GRDG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DGC+CGPSGYKRRALRSG XXXXXXXXXXX XXXXXXXHSSSGG ADSXXXXXXXXXXXXXXXXXXXX D G G DNGYEEYCDCSLSGGYTPRYGDSSD + S+ C + + + C++ D+CSNG G+QSG +CCLAECG CGG GC E GGGLG CCE +IEE+GELCSI L APC +D
Sbjct: 8 GGAMCSKDIPGVESSDGMACCPAECGVCSTSCGSKRRLSSRDSGGHSSSS----------CGTLKHRRRLSYGRDSSKRXXXXXXXXXXXXXXXXX-------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRRRLSYGRDGSKDSTXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSYDTPKHRRGLSYGRDG-----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGCDCGPSGYKRRALRSGSXXXXXXXXXXXNCDHGRHLWGGSDSNDSXXXXXXXHSSSGGRAADSXXXXXXXXXXXXXXXXXXXX--DSGSGDE-----------DNGYEEYCDCSLSGGYTPRYGDSSDXXXXXXXXXXXXGQANQRSAPAPTPVAEPVAPVTEPTGRCRRRVPCISALARLNNPTRCIVSHHTLSLLLLPHDVAVCSELDMCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYID 507
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ70_ECTSI) HSP 1 Score: 206 bits (524), Expect = 6.550e-56 Identity = 292/449 (65.03%), Postives = 298/449 (66.37%), Query Frame = -3
Query: 455 MRNQNPAHRRSXXXXXXXXXXXLMSDR*SXXXXXXXXXXXXXXXXXRTIRCRRCRCPPTGNDRGHSCTTRRASRRKSYCQSGARGACIRRDHSCNHRGSRQMNPWK--------------------------------------------------------------------------MSPWKTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTRRARRRGCGGASGYRRSRQMSPWKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTRRARRRGCGGASGYRRSRQRSPWRMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTCHARRRGCGGASGYRRSRQXXXXXXXXXXXXXXKMSAXXXXXXXXXXXXXXXSHMMGRSCPTSLLRMRSRLRCR 1579
M+NQ P HR LMSDR S RTIRCR CRCPPTG+DR S TTR ASRRKSY QSGARGACIRRDHSCNHRGSRQMNPWK M+PWKT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTRRARRRGCGGASGYRRSRQM+PW+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWT RA RRGCGGASGYRRSRQRSPW+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSPWTC A RRGCGGASGYRRSRQ XXXXXXXXXXX X SH RSCPTSL RMRSRLRCR
Sbjct: 1 MKNQRPGHR-------------LMSDRRS-----------------RTIRCRCCRCPPTGDDRVRSRTTRHASRRKSYRQSGARGACIRRDHSCNHRGSRQMNPWKRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTRRARRRGGGGASGYRRSRQMNPWKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTRRARRRGCGGASGYRRSRQMNPWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPWTCRAPRRGCGGASGYRRSRQRSPWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RSPWTCRAPRRGCGGASGYRRSRQRSLXXXXXXXXXXXXXXXXRRGGGGASR-----SHRRCRSCPTSLPRMRSRLRCR 409
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 191 bits (485), Expect = 4.100e-53 Identity = 96/116 (82.76%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 1792 MCDIFGSAPCVLXXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEPT 2139
MCDIFGSAPCVL TDVCSNGIPGVQSGVSCCLAECGGCGG GCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEPT
Sbjct: 1 MCDIFGSAPCVLGYAPAPTPVAEPVAPVTEPTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEPT 116
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 145 bits (365), Expect = 6.200e-32 Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 1759 CCADTIVEDGEMCDIFGSAPCVLXXXXXXXXXXXXXXXXXXXTDVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVA 2121
CC I + GE+C + +APCV+ D+CSNGIPG+QSG +CCLAECGGCGG GCA+LGGGLGE NCC+ EIE+FGELCS+K+ APCVVD SAPAPSPVA P A
Sbjct: 1614 CCQSEIEDFGELCSVKMAAPCVVD-------------------DMCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPSA 1715
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 140 bits (352), Expect = 2.690e-30 Identity = 81/139 (58.27%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 1759 CCADTIVEDGEMCDIFGSAPCVLXXXXXXXXXXXXXXXXXXX------------------TDVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVA 2121
CC+ I+ G C G APCVL XXXXX TDVCSNGIPG+QSGVSCCLA+CG CGG C E GGGLG NCCE +IEE+GELCSIKLEAPCVVDASAPAPSPVA P A
Sbjct: 1416 CCSSDILSTGASCSETGEAPCVLADVVLTPAPVAEPTXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQSGVSCCLADCGECGGSDCDEFGGGLGADNCCESDIEEYGELCSIKLEAPCVVDASAPAPSPVAMPTA 1554
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG31_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.180e-25 Identity = 54/68 (79.41%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 CLHAPVPCRSPLLVFFFKQAADATGAVETFGAKLHRHLSPANWLKNAGPTGIDADGNRRLSSNYGRGS 204
CLHAPVPCRS L F KQ AD GAVETFGAKLHR LSPANWLKNAGPTGI+AD NRRLS YG GS
Sbjct: 10 CLHAPVPCRSRLF-FLLKQVADTIGAVETFGAKLHRQLSPANWLKNAGPTGINADSNRRLSWKYGGGS 76
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.060e-22 Identity = 66/131 (50.38%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 1759 CCADTIVEDGEMCDIFGSAPCVLXXXXXXXXXXXXXXXXXXXT------------------DVCSNGIPGVQSGVSCCLAECGGCGGFGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAP 2097
CC ++ G C + APCVL XXXX DVCSNGIPG+QSG SCCLAECG CGG GCAE GGGLGE NCC IEE+GELCS+ L APC VDA P P
Sbjct: 385 CCQSDVLSAGVSCSVSEEAPCVLDAPATEMPAMAPTPEXXXXXXXXXXXXXXXXXXXXXXGDVCSNGIPGIQSGDSCCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAPPPTP 515
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ71_ECTSI) HSP 1 Score: 102 bits (254), Expect = 5.070e-22 Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query: 52 KQAADATGAVETFGAKLHRHLSPANWLKNAGPTGIDADGNRRLSSNYGRGS 204
+QAADATGAVETFGAKLHRHLSPANWLKNAGPTGIDADGNRRLS NYG GS
Sbjct: 34 QQAADATGAVETFGAKLHRHLSPANWLKNAGPTGIDADGNRRLSWNYGHGS 84
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C7_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.640e-21 Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 43 FFFKQAADATGAVETFGAKLHRHLSPANWLKNAGPTGIDADGNRRLSSNYGRGS 204
FF KQA D TGAVETFGAKLHRHLSPANWLKN+G TGI+ADGNRRLS NYG GS
Sbjct: 24 FFLKQATDTTGAVETFGAKLHRHLSPANWLKNSGLTGINADGNRRLSWNYGGGS 77 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1067.599.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1067.599.1 >prot_Ecto-sp9_F_contig1067.599.1 ID=prot_Ecto-sp9_F_contig1067.599.1|Name=mRNA_Ecto-sp9_F_contig1067.599.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=725bp CLHAPVPCRSPLLVFFFKQAADATGAVETFGAKLHRHLSPANWLKNAGPTback to top mRNA from alignment at Ecto-sp9_F_contig1067:5686..12843+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1067.599.1 ID=mRNA_Ecto-sp9_F_contig1067.599.1|Name=mRNA_Ecto-sp9_F_contig1067.599.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:5686..12843+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1067:5686..12843+ >mRNA_Ecto-sp9_F_contig1067.599.1 ID=mRNA_Ecto-sp9_F_contig1067.599.1|Name=mRNA_Ecto-sp9_F_contig1067.599.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4350bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1067:5686..12843+ (Ectocarpus species9 EcSCA_722f female)back to top |