mRNA_Ecto-sp9_F_contig10656.590.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10656.590.1
Unique NamemRNA_Ecto-sp9_F_contig10656.590.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10656.590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.150e-21
Identity = 63/106 (59.43%), Postives = 65/106 (61.32%), Query Frame = 2 
Query:  305 SYARDWVCLMAAAGEDKEEEKMELAAEVVGAVTKATVGFAVDRAAATVSEEQGLPPRTRPASQQESAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTVTAEGRQ 622
            S+ RD VCLMA         KMELAAEVVGAVTKATVGFAVDRAAATVSEEQGLPPRTR ASQQE AG                            PPT+TAEGRQ
Sbjct:   47 SHNRDRVCLMAXXXXXXXXXKMELAAEVVGAVTKATVGFAVDRAAATVSEEQGLPPRTRAASQQEWAGAKRKALVGLLGNFVAFLKTDDDASPPGNPPTLTAEGRQ 152
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BLAST of mRNA_Ecto-sp9_F_contig10656.590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.150e-7
Identity = 38/77 (49.35%), Postives = 39/77 (50.65%), Query Frame = 2 
Query:  161 MLFSTLLXXXXXXXXXXXXXXXXXXCRLRXXXXXXXXXXXXXXXXXGISYARDWVCLMAAAGEDKEEE-KMELAAEV 388
            ML STLL                  CRLR                 GISYAR+ VCLMAAAGEDKEEE KMELAAEV
Sbjct:    1 MLLSTLLLLVRGETAAAPPAAFVGDCRLRLAASESGGRTALSAGGGGISYARNRVCLMAAAGEDKEEEEKMELAAEV 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10656.590.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.150e-2159.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.150e-749.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10656contigEcto-sp9_F_contig10656:2977..4391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002060.1
Exons2
Model size646
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10656.590.1prot_Ecto-sp9_F_contig10656.590.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10656 2978..4391 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928283.9532382-UTR-Ecto-sp9_F_contig10656:2976..29771622928283.9532382-UTR-Ecto-sp9_F_contig10656:2976..2977Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10656 2977..2977 +
1692277820.5371966-UTR-Ecto-sp9_F_contig10656:2976..29771692277820.5371966-UTR-Ecto-sp9_F_contig10656:2976..2977Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10656 2977..2977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928283.9676847-CDS-Ecto-sp9_F_contig10656:2977..33611622928283.9676847-CDS-Ecto-sp9_F_contig10656:2977..3361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10656 2978..3361 +
1692277820.5466962-CDS-Ecto-sp9_F_contig10656:2977..33611692277820.5466962-CDS-Ecto-sp9_F_contig10656:2977..3361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10656 2978..3361 +
1622928283.9838884-CDS-Ecto-sp9_F_contig10656:4130..43911622928283.9838884-CDS-Ecto-sp9_F_contig10656:4130..4391Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10656 4131..4391 +
1692277820.5564253-CDS-Ecto-sp9_F_contig10656:4130..43911692277820.5564253-CDS-Ecto-sp9_F_contig10656:4130..4391Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10656 4131..4391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10656.590.1

>prot_Ecto-sp9_F_contig10656.590.1 ID=prot_Ecto-sp9_F_contig10656.590.1|Name=mRNA_Ecto-sp9_F_contig10656.590.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=215bp
MTMMSGGRLPWRPWCRHSCASSASTKPAPRCVWRTYQCCCCHHVRHRQLV
PLGMLFSTLLLLVRGETAAAPPAAFVGGCRLRLAASESGGRTVLSGGGGG
ISYARDWVCLMAAAGEDKEEEKMELAAEVVGAVTKATVGFAVDRAAATVS
EEQGLPPRTRPASQQESAGAKRKALVGLLGNFVAFLKADDDASPPRNPPT
VTAEGRQVCRGGGGV
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mRNA from alignment at Ecto-sp9_F_contig10656:2977..4391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10656.590.1 ID=mRNA_Ecto-sp9_F_contig10656.590.1|Name=mRNA_Ecto-sp9_F_contig10656.590.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1415bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10656:2977..4391+ (Ectocarpus species9 EcSCA_722f female)
GATGACGATGATGAGCGGCGGCCGACTCCCATGGAGGCCCTGGTGCAGAC
ACTCATGTGCCAGCAGCGCTTCTACTAAGCCGGCACCCCGCTGTGTATGG
CGTACGTACCAATGCTGCTGCTGTCACCACGTTCGTCATCGCCAGCTTGT
CCCGCTGGGCATGCTGTTCTCCACGTTGCTGCTCCTTGTCAGGGGTGAGA
CAGCAGCAGCACCGCCCGCCGCCTTTGTTGGCGGCTGTCGACTCCGCCTG
GCTGCGTCTGAGAGCGGCGGCCGGACGGTGTTGTCAGGAGGCGGTGGGGG
CATCAGCTACGCTAGGGATTGGGTTTGCCTCATGGCCGCCGCTGGCGAAG
ACAAGGAGGAGGAGAAGATGGAGCTTGCGGCAGAGGTGCGGCCCTGCGTT
TTCGACGTTTCCGATTTGATATTGTTTAAGCAACATGCGAACAAGTGGTA
CTGCTGTACGGGTTGCTATGCTCAGGTACACGCGGTGACATGCTCGCATG
TTGCAGATTGAAGGCATTGAGACGGCGTACGCATATATGCATATGTACAG
GATACAGCAATTACCTATACGTGTATGTGTGCTCGGCAGATACGGTGTGT
GGCCGGCTTGCAAAGGGTGGTTTTCATGTAGTGATCGTTTACATATACCC
GCTGCCATTGCCCCATGGATTCGGAAGATTTTTGTGTTGCGGCGGAACCC
GAGGTTCGCGCGGGGCGCTGCACCCAGACCGCGTTCGCGAAAGATGTCAT
TATTTGTTTTTTATTATTTCATCACATAGATGAAAGAGAGAAAGGGGGGT
GTCGTAACCCTAACCCAAACCCGTACCCCCTACTAAAACCAAGGTTGATA
TCCTCGCGATTGCTGCTGGATTCAACTGGCTTTCTCGAGCTTGAGAAACC
GCAGTCATGTGCTCATCAGCGACAGTAGACATACAAGCCACCGACACCGC
TGCTGTGTCCGAGAGGGATCGCTCACCTCTCCCTAACCCCCCCCCCGGTT
CGCTTCTGGTTCACCCTTGTGAAACGTAGCCTGGCCCGGCGAAAACCCGA
CATACATCGCTCCGTCGCGGCATGCGAGGTCAATGTTCTAACGACTATAC
GGCATGCGTTGACGTAAGTACCCCTCCGCCCGCCCCCCCGCCGGTTGTTC
GTAGGTGGTAGGTGCGGTGACGAAAGCGACGGTCGGGTTCGCCGTGGACC
GCGCTGCGGCGACGGTTTCCGAAGAGCAGGGGCTGCCGCCGCGCACCCGA
CCGGCCTCTCAGCAAGAGTCTGCCGGCGCCAAGCGGAAGGCCCTCGTGGG
CCTCCTCGGCAATTTCGTGGCCTTTCTCAAGGCCGATGACGACGCCTCCC
CCCCTAGAAACCCACCGACGGTGACGGCGGAGGGGCGACAGGTGTGTAGG
GGGGGAGGGGGTGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10656:2977..4391+

>mRNA_Ecto-sp9_F_contig10656.590.1 ID=mRNA_Ecto-sp9_F_contig10656.590.1|Name=mRNA_Ecto-sp9_F_contig10656.590.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10656:2977..4391+ (Ectocarpus species9 EcSCA_722f female)
ATGACGATGATGAGCGGCGGCCGACTCCCATGGAGGCCCTGGTGCAGACA
CTCATGTGCCAGCAGCGCTTCTACTAAGCCGGCACCCCGCTGTGTATGGC
GTACGTACCAATGCTGCTGCTGTCACCACGTTCGTCATCGCCAGCTTGTC
CCGCTGGGCATGCTGTTCTCCACGTTGCTGCTCCTTGTCAGGGGTGAGAC
AGCAGCAGCACCGCCCGCCGCCTTTGTTGGCGGCTGTCGACTCCGCCTGG
CTGCGTCTGAGAGCGGCGGCCGGACGGTGTTGTCAGGAGGCGGTGGGGGC
ATCAGCTACGCTAGGGATTGGGTTTGCCTCATGGCCGCCGCTGGCGAAGA
CAAGGAGGAGGAGAAGATGGAGCTTGCGGCAGAGATGACGATGATGAGCG
GCGGCCGACTCCCATGGAGGCCCTGGTGCAGACACTCATGTGCCAGCAGC
GCTTCTACTAAGCCGGCACCCCGCTGTGTATGGCGTACGTACCAATGCTG
CTGCTGTCACCACGTTCGTCATCGCCAGCTTGTCCCGCTGGGCATGCTGT
TCTCCACGTTGCTGCTCCTTGTCAGGGGTGAGACAGCAGCAGCACCGCCC
GCCGCCTTTGTTGGCGGCTGTCGACTCCGCCTGGCTGCGTCTGAGAGCGG
CGGCCGGACGGTGTTGTCAGGAGGCGGTGGGGGCATCAGCTACGCTAGGG
ATTGGGTTTGCCTCATGGCCGCCGCTGGCGAAGACAAGGAGGAGGAGAAG
ATGGAGCTTGCGGCAGAGGTGGTAGGTGCGGTGACGAAAGCGACGGTCGG
GTTCGCCGTGGACCGCGCTGCGGCGACGGTTTCCGAAGAGCAGGGGCTGC
CGCCGCGCACCCGACCGGCCTCTCAGCAAGAGTCTGCCGGCGCCAAGCGG
AAGGCCCTCGTGGGCCTCCTCGGCAATTTCGTGGCCTTTCTCAAGGCCGA
TGACGACGCCTCCCCCCCTAGAAACCCACCGACGGTGACGGCGGAGGGGC
GACAGGTGTGTAGGGGGGGAGGGGGTGTAGTGGTAGGTGCGGTGACGAAA
GCGACGGTCGGGTTCGCCGTGGACCGCGCTGCGGCGACGGTTTCCGAAGA
GCAGGGGCTGCCGCCGCGCACCCGACCGGCCTCTCAGCAAGAGTCTGCCG
GCGCCAAGCGGAAGGCCCTCGTGGGCCTCCTCGGCAATTTCGTGGCCTTT
CTCAAGGCCGATGACGACGCCTCCCCCCCTAGAAACCCACCGACGGTGAC
GGCGGAGGGGCGACAGGTGTGTAGGGGGGGAGGGGGTGTA
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