mRNA_Ecto-sp9_F_contig10619.565.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10619.565.1
Unique NamemRNA_Ecto-sp9_F_contig10619.565.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: DEAD/DEAH (box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 5.590e-105
Identity = 258/321 (80.37%), Postives = 263/321 (81.93%), Query Frame = 1 
Query:    1 QRGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEGAKKAAVSAGGAXXXXRGREVGPGXXXXXXXXXXXXXQAVSDAASRSRGGEGGDGSVSGVPAKEGGVEDTGDEESNGXXXXXXXXXXXXXXXXXXXXXXXXXKGRTRGSKKRGRGEQRSGAGGEASPESAALLEAGIVGDMAAVASSVGDPSSGGSGGDAGTPGSRRRTPGSGAAGGEXXXXXXXXXXXXXGDEWEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            +RGAVV+EANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEGAKKAA      XXXX        XXXXXXX      QAVSDA                VPAKEGGVEDTGD     XXXXXXXXXXXXXXXXXXXXXXXXXKGRTRGSKKRGR           SPESAALLEAGIVGDMAAVAS++GDPSSGGSGGDAGTPGSR RTPGSGAAG  XXXXXXXXXXXXX  EWEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDL KTAPQMVPLVQGYRGGYTKDERRKIEGSLFANK+
Sbjct:  245 ERGAVVEEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEGAKKAAXXXXXXXXXXXXXXXXXXXXXXXXXRQGEGEQAVSDAXXXXXXXX--XXXXXXVPAKEGGVEDTGDXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXKGRTRGSKKRGRXXXXXXXXXXXSPESAALLEAGIVGDMAAVASAIGDPSSGGSGGDAGTPGSRTRTPGSGAAGXXXXXXXXXXXXXXXXXEWEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLGKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKL 562
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.730e-76
Identity = 255/519 (49.13%), Postives = 266/519 (51.25%), Query Frame = 1 
Query:    1 QRGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDE-------------------------------------------------------------------------------------------------GAKK---AAVSAGGAXXXX--------------------------------------------------------------------RGRE---VGPGXXXXXXXXXXXXXQAV-----------------SDAASRSRGGEGGDGSVSGVPAKEGGVEDTGDEESNGXXXXXXXXXXXXXXXXXXXXXXXXXKGRTR-----GSKKRGRGEQRSGAGGEASPESAALLEAGIVGDMAAVASSVGDPSSGGSGGDAGTPGSRRRTPGSGAAGGEXXXXXXXXXXXXXGDE-----WEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            +RGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDE                                                                                                 GAKK   +AVSAGGA   X                                                                    RG E    GP               A+                 S    R  G      SVSG+PAKEGGVE TGDE S+G   XXXXXXXXXXXXXXXXXXXXXX          GSKKRGR EQR+GA GEASPE+AALLEAG+V DMAAVAS+VGDPSSGGSGGDAGTPGSR RTPGS      XXXXXXXXXXXXX        WEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQ+VPLVQGYRGGYTKDERRKIEGSLFANK+
Sbjct:  429 ERGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEAHVYRGAFGAHVSMVLRRLLRLWSVNALPGPPPQFICCSATMSSAPSHFASLLPLEECLGGRRNLYLGSVDTAPSSRKTFVLWRPPIVAEWFTSPSEGAKKEAVSAVSAGGAGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRGLEGWRKGPSDNFYNKEYLKLMGAALPRPSPLPXXXXXXXXXXSPPFVRGTGA-----SVSGIPAKEGGVEATGDEVSSGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKKRGRREQRAGAAGEASPEAAALLEAGMVVDMAAVASAVGDPSSGGSGGDAGTPGSRTRTPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXWEDGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQLVPLVQGYRGGYTKDERRKIEGSLFANKL 942
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKV5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.610e-26
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:  727 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            RRRS I ETA++L+ALVKQ V+TLAFCRTRKLTEL L+Y  +DLE +AP +V  V+GYRGGYTK +RR+IEG LF+ K+
Sbjct:    1 RRRSSIVETARVLSALVKQHVRTLAFCRTRKLTELVLKYCTEDLECSAPHLVEAVKGYRGGYTKGDRREIEGKLFSGKL 79
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.540e-19
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:  733 RSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            RS I ETA +  AL+KQRV+TLAFCR RKL EL LRY  QDL  TAP++   V+GYRGGY+K ERR+IE  LF  K+
Sbjct:  165 RSAIVETAMVFTALIKQRVRTLAFCRVRKLVELVLRYSLQDLAATAPRLARRVRGYRGGYSKAERREIEAQLFGGKL 241
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.540e-18
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:  727 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLF 951
            R RS I ETA +  AL+KQRV+TLAFCR RKL EL LRY  QDL  TAP++   V+GYRGGY+K +RR+IE  LF
Sbjct:  160 RPRSAIVETAMLFTALIKQRVRTLAFCRVRKLVELVLRYSLQDLAATAPRLAQRVRGYRGGYSKKDRREIERRLF 234
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYE6_SALR5)

HSP 1 Score: 90.9 bits (224), Expect = 1.900e-16
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  736 SPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            S I + A IL+ALVKQ V+TLAF + RK+TEL L+Y   DL+ TAPQ+V  V+ YR GYTK+ERR IE +LFA K+
Sbjct:  694 SAILQAALILSALVKQHVRTLAFAKVRKVTELVLKYTRHDLKHTAPQLVARVKSYRAGYTKEERRAIERALFAGKI 769
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RH75_VANPL)

HSP 1 Score: 85.5 bits (210), Expect = 1.210e-14
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  715 WE-DGRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            WE   RR SPI ET+ + A +++  ++ +AFC+TRKL+EL L Y  + L+KTA  +V ++  YRGGYT  ERR+IE  LF NK+
Sbjct:  685 WEISTRRTSPILETSHLFAEMIQHGLRCIAFCKTRKLSELVLCYTREILQKTASDLVDVISVYRGGYTPKERRRIEADLFENKL 768
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHE3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.170e-14
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  775 VKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            VK+RV+T+AF RTRKLTEL LRY  QDL  TAP +V  V+ YRGGYTK++RR IE  LF  ++
Sbjct:    1 VKRRVRTIAFSRTRKLTELVLRYTLQDLTATAPGLVKFVKSYRGGYTKEDRRAIEAQLFQGQL 63
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: uncharacterized (protein LOC104818356 isoform X4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8882)

HSP 1 Score: 81.3 bits (199), Expect = 2.950e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:  727 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            R  SPI E A + A +V+  ++ +AFCR+RKL EL L    + L KTAP +V  +  YRGGYT ++RRKIEG LF  K+
Sbjct:  459 RTSSPISEVALLFAEMVRHGLRCIAFCRSRKLCELVLCLTREILAKTAPHLVEAISSYRGGYTAEDRRKIEGGLFGGKL 537
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Match: uncharacterized (protein LOC104818356 isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4BCA)

HSP 1 Score: 81.3 bits (199), Expect = 3.130e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:  727 RRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGYRGGYTKDERRKIEGSLFANKV 963
            R  SPI E A + A +V+  ++ +AFCR+RKL EL L    + L KTAP +V  +  YRGGYT ++RRKIEG LF  K+
Sbjct:  704 RTSSPISEVALLFAEMVRHGLRCIAFCRSRKLCELVLCLTREILAKTAPHLVEAISSYRGGYTAEDRRKIEGGLFGGKL 782
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10619.565.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DEAD/DEAH5.590e-10580.37box helicase domain-containing protein n=1 Tax=Ect... [more]
Uncharacterized2.730e-7649.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
P-loop8.610e-2667.09containing nucleoside triphosphate hydrolase prote... [more]
Hypothetical1.540e-1962.34protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical4.540e-1862.67protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Uncharacterized1.900e-1659.21protein n=1 Tax=Salpingoeca rosetta (strain ATCC 5... [more]
Uncharacterized1.210e-1448.81protein n=2 Tax=Vanilla planifolia TaxID=51239 Rep... [more]
Hypothetical5.170e-1461.90protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
uncharacterized2.950e-1349.37protein LOC104818356 isoform X4 n=1 Tax=Tarenaya h... [more]
uncharacterized3.130e-1349.37protein LOC104818356 isoform X1 n=3 Tax=Tarenaya h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10619contigEcto-sp9_F_contig10619:508..3979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.8
Seed ortholog evalue1.7e-91
Seed eggNOG ortholog2880.D8LLG5
KEGG koko:K06877
GOsGO:0000166,GO:0000217,GO:0000405,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0034644,GO:0035639,GO:0035861,GO:0036094,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0104004,GO:0140097,GO:0140098,GO:1901255,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.nucleotide-excision repair involved in interstrand cross-link repair
EggNOG OGsCOG1205@1,KOG4150@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons4
Model size963
Cds size963
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10619.565.1prot_Ecto-sp9_F_contig10619.565.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10619 508..3979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928280.987701-CDS-Ecto-sp9_F_contig10619:507..6181622928280.987701-CDS-Ecto-sp9_F_contig10619:507..618Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 508..618 -
1692277819.3307946-CDS-Ecto-sp9_F_contig10619:507..6181692277819.3307946-CDS-Ecto-sp9_F_contig10619:507..618Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 508..618 -
1622928280.9993153-CDS-Ecto-sp9_F_contig10619:1561..21141622928280.9993153-CDS-Ecto-sp9_F_contig10619:1561..2114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 1562..2114 -
1692277819.3507462-CDS-Ecto-sp9_F_contig10619:1561..21141692277819.3507462-CDS-Ecto-sp9_F_contig10619:1561..2114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 1562..2114 -
1622928281.0208442-CDS-Ecto-sp9_F_contig10619:2378..25451622928281.0208442-CDS-Ecto-sp9_F_contig10619:2378..2545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 2379..2545 -
1692277819.3589828-CDS-Ecto-sp9_F_contig10619:2378..25451692277819.3589828-CDS-Ecto-sp9_F_contig10619:2378..2545Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 2379..2545 -
1622928281.0358503-CDS-Ecto-sp9_F_contig10619:3847..39791622928281.0358503-CDS-Ecto-sp9_F_contig10619:3847..3979Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 3848..3979 -
1692277819.366979-CDS-Ecto-sp9_F_contig10619:3847..39791692277819.366979-CDS-Ecto-sp9_F_contig10619:3847..3979Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10619 3848..3979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10619.565.1

>prot_Ecto-sp9_F_contig10619.565.1 ID=prot_Ecto-sp9_F_contig10619.565.1|Name=mRNA_Ecto-sp9_F_contig10619.565.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=321bp
QRGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEGAKKAA
VSAGGAGGGGRGREVGPGAAAAGGGREGEGEQAVSDAASRSRGGEGGDGS
VSGVPAKEGGVEDTGDEESNGGGGGGGSGAATGKAAGAPAAAAAAAKGRT
RGSKKRGRGEQRSGAGGEASPESAALLEAGIVGDMAAVASSVGDPSSGGS
GGDAGTPGSRRRTPGSGAAGGEGEGEGEGGGEGGGGDEWEDGRRRSPICE
TAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLEKTAPQMVPLVQGY
RGGYTKDERRKIEGSLFANKV
back to top

mRNA from alignment at Ecto-sp9_F_contig10619:508..3979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10619.565.1 ID=mRNA_Ecto-sp9_F_contig10619.565.1|Name=mRNA_Ecto-sp9_F_contig10619.565.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3472bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10619:508..3979- (Ectocarpus species9 EcSCA_722f female)
CAGCGAGGGGCCGTGGTGGACGAGGCGAACATCATCCTCACCAACCCGGA
CATGCTGCACGCCTCGGTGCTGCCCGGGCACAAGAAGTTCCGCCGCATCC
TGGGCAACCTGTCGCACGTCGTCATCGACGAGGTCGGTTCACGTAGGAGA
CGTGTGTCCGTTGTCTTGTGCGGTTATTTATTTACGGATGCTAGTTACAG
TAGTACCGCTGAAGATTCGCTTGGTGGCACAGCCCCGTGAATATCCGCGC
GATGCCTCCACCTCAGAACGCGTCCTCTCATCGCATTCACCCTCCCACTC
ACCCCAGGACAACCGAGCGGTATGCTTGCGATTGTACCAAATGGCACGGA
CTATCAAAAATGAGGTACTACCCCCCCCCTCGTCAAGTATTCCCGTGCCC
CACCCCCCGGTGACACGAGGCATACTGTTGTACCCCGGCCTTTCCGTCTC
GCCTTTGCGCGTGTGTCGCGTCGGCAGGCGCACGTGTACCGCGGCGCCTT
CGGGGCCCACGTTTCGATGGTGCTACGCCGCTTGCTACGCCTCTGGTCGG
TCAACGCGCTCCCCGGCCCCCCGCCGCAGGTGTGCTGCTGCTGTTGCTGT
TGACGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGACGTTGTTGTTGTTG
TTGTCGTTGTTGACGTTGTTGTTGGTGGTCGTGGTGGAGTGGTGTTGTTG
GTGTTGTCGGTGTTGATGTTGGTATTGATGTTGGTTTGGTGTTGACGTTG
TTGGTAGCGTTGTTGGTGACGTTATTATTGTTGTTGTTGTTGGTGGTGGT
GTTGACGTTGTTGGTGACGTGCTGATCGGTTTCGCGTTTGTTTGAGGAGC
TTCAAGCACGGCGACGCGGCCGGAGCTTCGTCTCCAAGATATAGAGAAGA
TGCCGCCTCCTTTGTTCGTGCGATGGTTTCGCTCACAGATCTCGATTTAA
GTTGGGCAGTCTTAAGTATAGTATACCTAGAAGGGCCGAGATCACGCCGA
GAAGGGTGAGGAGACCAGACGTACAGCTGCGTGGTGGACACACCGTGATG
TGTGTTGTTTTCGTGATAGACTGTGTAGACTATATTTACACGGTTTGTGC
GGGACAATCATCCATCTCTCCCTCCCCCCCCCCAACTCCCCGTGCCTCTC
TTTCTGACCCCCCCCCCCCCTCCCCCCCTCCCCCCCTGCGATGACTGCAT
TCTGTACACAATTGTACCCCCCGCCCCCCCCGCCCCCCCCGCCAGTTCAT
CTGCTGCTCCGCCACCATGAGCTCCGCGCCTTCGCACTTCGCGTCCCTGC
TCCCCCTGGAGGAATGTCTTGGCGGCAGACGGAACCTCTACCTCGGGAGC
GTCGACACCGCTCCCAGCAGCCGCAAGACCTTCGTCCTCTGGCGCCCGCC
CATCGTCGCGGAGTGGTTCACGCCTCCTTCGCAGGGCGCCAAGAAGGCGG
CGGTATCGGCGGGGGGGGCGGGGGGCGGGGGGCGGGGAAGGGAGGTAGGT
CCAGGAGCGGCGGCAGCTGGAGGGGGACGAGAGGGCGAAGGGGAGCAAGC
GGTGTCCGATGCCGCCTCGCGATCCCGCGGGGGTGAGGGGGGCGACGGCA
GGTGGAGAGGCGGGCGTCGTGGTGGTGGCGGCGGTGGCGGTGGTGGCGGC
GGTGGTAGTGGTGGTGGTGCTGCTGCTGCTGGAGCGCCGTCCTTGAGGGG
CCTGGAGGGGTGGAGAAAGGGCCCGAGCGACAACTTTTACAACAAGGAGT
ACCTGAAGCTCATGGGGGCGGCGCTGCCACGGCCATCATCGCTACCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCCCCCCCTTCCGCGCG
AGGGACGGGGGCGAGCGTTTCGGGAGTTCCCGCCAAGGAGGGCGGCGTCG
AGGACACAGGAGACGAGGAGAGTAACGGCGGCGGTGGCGGCGGTGGGAGC
GGAGCTGCAACCGGCAAGGCGGCGGGAGCACCAGCAGCAGCAGCAGCAGC
AGCTAAAGGACGGACGCGCGGCAGCAAGAAGCGCGGGCGCGGGGAACAAC
GGTCTGGGGCGGGCGGGGAGGCCTCCCCGGAGTCTGCCGCTCTCCTCGAG
GCTGGCATAGTCGGGGATATGGCGGCGGTGGCCTCGTCGGTAGGCGACCC
TAGTAGCGGCGGCAGCGGTGGGGATGCAGGGACACCGGGGTCCAGAAGAA
GAACGCCGGGGAGCGGGGCGGCGGGAGGGGAAGGGGAAGGGGAAGGGGAA
GGGGGGGGAGAAGGAGGGGGAGGGGACGAGTGGGAAGACGGCCGGCGACG
CAGCCCGATCTGCGAGACGGCGCAGATCCTGGCGGCTCTGGTTAAGCAGC
GGGTCAAGACGCTGGCGTTCTGCCGCACTCGAAAGCTGACGGAGCTGACG
CTGCGCTACGGGCACCAGGTATGCGCGCGCCGATGTTCCATGTATAATTT
CAAGCCTGCTACTTGGTTTGCTATGTATTTTATGGCCAGATTTTCCATGT
ACGCACGCGCATCGGTAGACGCCACATCAACACCCCCTGGACATGACGCC
GGGGTGGGTACTAAAAAAGGCGTCTTCACTCTTCGACGCGGGGAGAGCGC
GATACTGCACATGCCTTGGAGCACATTGAAACCACCCTAGCGAAATGTTC
AGCCGAGGTTTGGATCATTTGGCCGCATTTGCTACATCTCGACTGTGCGT
GTGTACATAACGAAAAACACAAACCAAGAGCGGCCAAAGTGTAAGATAGG
GGAGAGAAGCGCATGCGTACTGTGCCCTCTTTCGGCCGCGGTTATATCGT
CGTGTGGGACAGCGGAAGTGCGTTTCTCTCGGGCCCGGCAAGCGACTAAG
AAACGCAACAGATGGCACGCATCGACCCCCACGGATTACGACTCAGCACC
AGCACCAGCAGCACCAGCATCAGTAGCAATATCGGTGCCAGGCCCCCTCG
CTGGGGGGGGGCGCGGCGCGATGAACGGTTGGTTGAATCGACTGCCGTGG
CACGCGATTTTTCTCGGCGACGCGTCTGGTGGAATAAGCTAGCTAGGTAA
GGCGGCGGGACCAGTGTGCCCTTCTTCTCTGTGCTCTGTCGCTCTGCCAA
GCAGGACCCACCTGCCTCAAGCCGCGGCCCTGCCTCCCGCGCTGCTTGTT
CTTCTTGCTGTGTAACTGACAAAAAAAAAGAAGATGGTAGTCCTGCTGTA
CAGGCATACTACCTGCCGGCGTCTTTTTTCAAACGTGTTGGATCGTTTTT
GGTCATGGGCGTGTCGTCTGCTGCAGTCGCAGGCATATGCGTTTCTGTTT
TTTAGTTCTTCTTGGTCCTTCTGTTGTTCTCGGCGTGCGTGTTTCGGTCG
CCTCGTGCCAGGACTTGGAGAAGACCGCGCCGCAAATGGTGCCGCTGGTG
CAGGGATACCGGGGCGGGTACACAAAGGACGAGCGAAGGAAGATCGAGGG
CAGCCTTTTCGCCAACAAGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10619:508..3979-

>mRNA_Ecto-sp9_F_contig10619.565.1 ID=mRNA_Ecto-sp9_F_contig10619.565.1|Name=mRNA_Ecto-sp9_F_contig10619.565.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1926bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10619:508..3979- (Ectocarpus species9 EcSCA_722f female)
CAGCGAGGGGCCGTGGTGGACGAGGCGAACATCATCCTCACCAACCCGGA
CATGCTGCACGCCTCGGTGCTGCCCGGGCACAAGAAGTTCCGCCGCATCC
TGGGCAACCTGTCGCACGTCGTCATCGACGAGCAGCGAGGGGCCGTGGTG
GACGAGGCGAACATCATCCTCACCAACCCGGACATGCTGCACGCCTCGGT
GCTGCCCGGGCACAAGAAGTTCCGCCGCATCCTGGGCAACCTGTCGCACG
TCGTCATCGACGAGGGCGCCAAGAAGGCGGCGGTATCGGCGGGGGGGGCG
GGGGGCGGGGGGCGGGGAAGGGAGGTAGGTCCAGGAGCGGCGGCAGCTGG
AGGGGGACGAGAGGGCGAAGGGGAGCAAGCGGTGTCCGATGCCGCCTCGC
GATCCCGCGGGGGTGAGGGGGGCGACGGCAGGGCGCCAAGAAGGCGGCGG
TATCGGCGGGGGGGGCGGGGGGCGGGGGGCGGGGAAGGGAGGTAGGTCCA
GGAGCGGCGGCAGCTGGAGGGGGACGAGAGGGCGAAGGGGAGCAAGCGGT
GTCCGATGCCGCCTCGCGATCCCGCGGGGGTGAGGGGGGCGACGGCAGCG
TTTCGGGAGTTCCCGCCAAGGAGGGCGGCGTCGAGGACACAGGAGACGAG
GAGAGTAACGGCGGCGGTGGCGGCGGTGGGAGCGGAGCTGCAACCGGCAA
GGCGGCGGGAGCACCAGCAGCAGCAGCAGCAGCAGCTAAAGGACGGACGC
GCGGCAGCAAGAAGCGCGGGCGCGGGGAACAACGGTCTGGGGCGGGCGGG
GAGGCCTCCCCGGAGTCTGCCGCTCTCCTCGAGGCTGGCATAGTCGGGGA
TATGGCGGCGGTGGCCTCGTCGGTAGGCGACCCTAGTAGCGGCGGCAGCG
GTGGGGATGCAGGGACACCGGGGTCCAGAAGAAGAACGCCGGGGAGCGGG
GCGGCGGGAGGGGAAGGGGAAGGGGAAGGGGAAGGGGGGGGAGAAGGAGG
GGGAGGGGACGAGTGGGAAGACGGCCGGCGACGCAGCCCGATCTGCGAGA
CGGCGCAGATCCTGGCGGCTCTGGTTAAGCAGCGGGTCAAGACGCTGGCG
TTCTGCCGCACTCGAAAGCTGACGGAGCTGACGCTGCGCTACGGGCACCA
GCGTTTCGGGAGTTCCCGCCAAGGAGGGCGGCGTCGAGGACACAGGAGAC
GAGGAGAGTAACGGCGGCGGTGGCGGCGGTGGGAGCGGAGCTGCAACCGG
CAAGGCGGCGGGAGCACCAGCAGCAGCAGCAGCAGCAGCTAAAGGACGGA
CGCGCGGCAGCAAGAAGCGCGGGCGCGGGGAACAACGGTCTGGGGCGGGC
GGGGAGGCCTCCCCGGAGTCTGCCGCTCTCCTCGAGGCTGGCATAGTCGG
GGATATGGCGGCGGTGGCCTCGTCGGTAGGCGACCCTAGTAGCGGCGGCA
GCGGTGGGGATGCAGGGACACCGGGGTCCAGAAGAAGAACGCCGGGGAGC
GGGGCGGCGGGAGGGGAAGGGGAAGGGGAAGGGGAAGGGGGGGGAGAAGG
AGGGGGAGGGGACGAGTGGGAAGACGGCCGGCGACGCAGCCCGATCTGCG
AGACGGCGCAGATCCTGGCGGCTCTGGTTAAGCAGCGGGTCAAGACGCTG
GCGTTCTGCCGCACTCGAAAGCTGACGGAGCTGACGCTGCGCTACGGGCA
CCAGGACTTGGAGAAGACCGCGCCGCAAATGGTGCCGCTGGTGCAGGGAT
ACCGGGGCGGGTACACAAAGGACGAGCGAAGGAAGATCGAGGGCAGCCTT
TTCGCCAACAAGGTTGACTTGGAGAAGACCGCGCCGCAAATGGTGCCGCT
GGTGCAGGGATACCGGGGCGGGTACACAAAGGACGAGCGAAGGAAGATCG
AGGGCAGCCTTTTCGCCAACAAGGTT
back to top