mRNA_Ecto-sp9_F_contig10590.536.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10590.536.1
Unique NamemRNA_Ecto-sp9_F_contig10590.536.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10590.536.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10590contigEcto-sp9_F_contig10590:3602..3984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928275.4429758-UTR-Ecto-sp9_F_contig10590:3601..36751622928275.4429758-UTR-Ecto-sp9_F_contig10590:3601..3675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10590 3602..3675 +
1692277817.464235-UTR-Ecto-sp9_F_contig10590:3601..36751692277817.464235-UTR-Ecto-sp9_F_contig10590:3601..3675Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10590 3602..3675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928275.4580142-CDS-Ecto-sp9_F_contig10590:3675..39841622928275.4580142-CDS-Ecto-sp9_F_contig10590:3675..3984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10590 3676..3984 +
1692277817.4723842-CDS-Ecto-sp9_F_contig10590:3675..39841692277817.4723842-CDS-Ecto-sp9_F_contig10590:3675..3984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10590 3676..3984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10590.536.1prot_Ecto-sp9_F_contig10590.536.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10590 3676..3984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10590.536.1

>prot_Ecto-sp9_F_contig10590.536.1 ID=prot_Ecto-sp9_F_contig10590.536.1|Name=mRNA_Ecto-sp9_F_contig10590.536.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MSGWTQNRTPRQPLLLPTCFTTVIHRKEQTKQATRTRSEKPQRTAVPSIT
TRLVTAKRQGISSQEYTHSVANLRQNTANCPTYPKTATVVGKGTHGATIH
PQL
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mRNA from alignment at Ecto-sp9_F_contig10590:3602..3984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10590.536.1 ID=mRNA_Ecto-sp9_F_contig10590.536.1|Name=mRNA_Ecto-sp9_F_contig10590.536.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=383bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10590:3602..3984+ (Ectocarpus species9 EcSCA_722f female)
ATCCGTCCCTCGCCGGCCATTATACCCCCCACTCAATCGCAACCACGTAA
ACTACTGTAAACACAAATTAAAACATGTCTGGATGGACACAGAACAGGAC
ACCACGCCAACCCTTATTACTTCCGACATGTTTTACCACCGTTATTCACA
GAAAAGAACAAACTAAACAAGCTACACGGACCAGGAGCGAGAAGCCGCAG
CGCACGGCCGTGCCATCTATAACCACCCGGCTCGTCACCGCTAAGAGACA
AGGGATATCAAGCCAAGAGTACACACACAGCGTCGCGAACCTCCGGCAGA
ATACAGCCAATTGTCCCACTTACCCGAAAACAGCCACAGTCGTAGGAAAG
GGAACACACGGGGCAACGATACACCCCCAACTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10590:3602..3984+

>mRNA_Ecto-sp9_F_contig10590.536.1 ID=mRNA_Ecto-sp9_F_contig10590.536.1|Name=mRNA_Ecto-sp9_F_contig10590.536.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10590:3602..3984+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTGGATGGACACAGAACAGGACACCACGCCAACCCTTATTACTTCC
GACATGTTTTACCACCGTTATTCACAGAAAAGAACAAACTAAACAAGCTA
CACGGACCAGGAGCGAGAAGCCGCAGCGCACGGCCGTGCCATCTATAACC
ACCCGGCTCGTCACCGCTAAGAGACAAGGGATATCAAGCCAAGAGTACAC
ACACAGCGTCGCGAACCTCCGGCAGAATACAGCCAATTGTCCCACTTACC
CGAAAACAGCCACAGTCGTAGGAAAGGGAACACACGGGGCAACGATACAC
CCCCAACTGATGTCTGGATGGACACAGAACAGGACACCACGCCAACCCTT
ATTACTTCCGACATGTTTTACCACCGTTATTCACAGAAAAGAACAAACTA
AACAAGCTACACGGACCAGGAGCGAGAAGCCGCAGCGCACGGCCGTGCCA
TCTATAACCACCCGGCTCGTCACCGCTAAGAGACAAGGGATATCAAGCCA
AGAGTACACACACAGCGTCGCGAACCTCCGGCAGAATACAGCCAATTGTC
CCACTTACCCGAAAACAGCCACAGTCGTAGGAAAGGGAACACACGGGGCA
ACGATACACCCCCAACTG
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