mRNA_Ecto-sp9_F_contig10574.523.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10574.523.1
Unique NamemRNA_Ecto-sp9_F_contig10574.523.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Similar (to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI)

HSP 1 Score: 515 bits (1326), Expect = 1.920e-179
Identity = 270/279 (96.77%), Postives = 274/279 (98.21%), Query Frame = 1
Query:    1 TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSSPS 837
            +EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTI CGDCTVPVSKVRDVGGVIYHYGT+SGTPQPRLEAGRPASLALDSAKRLRHA LHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMET+VKMADQEHGDEAPSSSSSSAQEGP+RGAAGRGREEV VVAERGGRGGRGKVPASSTAAAATKYGAATR VTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSS S
Sbjct:   11 SEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSSSS 289          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.060e-52
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1
Query:  220 AGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQ 501
            AGRP SLALDSAKRLRHAVLHSAGHAVDKAV GAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLV+ANMETVVKMADQ
Sbjct:   11 AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMADQ 104          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: tRNA_SAD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV6_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.170e-48
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 1
Query:  499 QEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
            +EHGDEAPSSS+SSAQEGPARGAAG GREEVAVVAE  GR G+G VPAS TAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITK KAKKGT+RVSYTLAPSS
Sbjct:   21 EEHGDEAPSSSASSAQEGPARGAAGTGREEVAVVAEPEGRRGKGNVPASLTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKAKAKKGTIRVSYTLAPSS 130          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Alanyl-tRNA (editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.300e-43
Identity = 102/266 (38.35%), Postives = 136/266 (51.13%), Query Frame = 1
Query:   25 VEDDSQGSAIILDRTIFHPQGGGQPSDEGTIAC-GDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
            V DD    A++LDRT+FHPQGGGQP+D GT+    +    V+ V+  G VI H+G   G    +L+ G     ++D  +RL+ A LHSAGHA+D AV  A G     P KGYHF+D PYVEY G L A  ++   ++K N+EL  L+ A +ET V+ ++                                                           A  R+V+V G +CPCGGTHVRST E+ G+R+TK KAK G LRVSYT+A
Sbjct:   24 VRDD----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFGQ-HGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE-----------------------------------------------------------AGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTIA 223          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.470e-35
Identity = 97/268 (36.19%), Postives = 132/268 (49.25%), Query Frame = 1
Query:   34 DSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTI---SGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAAT-RIVTVAGL-SCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
            D    A+ILDRT+FH QGGGQP+D GTI        V+ VR  G  ++H+G+     G       AG    L++D  KR+ HA  HSAGHA+D AV    G    +  KGYHF D PYVEY G L   + K+  ++  N ++ +++  ++ T V     E                                          K    +  A  +   A T R+VTVAG  +CPCGGTHVRST E+ GV +TKVK+KKG ++VSY++ P
Sbjct:   57 DDATHAVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEA----------------------------------------KAACGTPDADFSHITAPTIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVTP 282          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Threonine/alanine (tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA)

HSP 1 Score: 142 bits (357), Expect = 5.570e-35
Identity = 102/262 (38.93%), Postives = 135/262 (51.53%), Query Frame = 1
Query:   49 AIILDRTIFHPQGGGQPSDEGTIA-CGDCTVPVSKVRD--VGGVIYHYGTIS--GTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTV-AGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
            A++LDRTIFHPQGGGQP D G +A        VS+VR     GVI H GT +  GT     +AG    L +D AKR  HA LHSAGH +DKAV          P KGYHF D+PYVEY+GT     ++ + +++   E ++L+    E  V++    H                        +EEV  +             AS + A  T+     R+VTV A L CPCGGTHV++T E+  + I K+ AKKG +R+SYTL
Sbjct:   43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFAEAGTT---FQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVV---HS-----------------------KEEVERLCG----------SASDSGANPTEP---VRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.340e-34
Identity = 98/274 (35.77%), Postives = 145/274 (52.92%), Query Frame = 1
Query:    1 TEATVLGVVEDDSQGSA-IILDRTIFHPQGGGQPSDEGTIAC--GDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMET-VVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
            T A V+ V      G   +ILD+T+FHPQGGGQP+D+G ++   G+  V + K     G+++H+G++ G+    LEAG      +D   R   + LHSAGHA+D A+     +G+ +P KGYHF D+PYVEY GTL A  EKD+  E+  +EL  ++   + + VV ++  E  +  P ++                   V++  E                      GA  R+V V G  CPCGGTHV +  E+E V +T++KAKKGT++VSY
Sbjct:   61 TPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSM-GSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTL-AAEEKDSLQERLTNELQSIIEKQVPSKVVYLSAPEVLELCPGAN-------------------VSIFPE----------------------GAMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSY 290          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 3.640e-32
Identity = 102/275 (37.09%), Postives = 141/275 (51.27%), Query Frame = 1
Query:    7 ATVLGVVED-DSQGSAIILDRTIFHPQGGGQPSDEGTI-AC-GDCTVPVSKV-RDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMAD-QEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
            ATVL +  D    G ++ LDRT FHPQGGGQP+D+GTI AC G  T  VS V +D  GV+ H     G  +P L+ G   +  +D A R ++A +HSAGH +D A+  A       P KGYHF    YVEY G L A  E+DA + K  + +D+L+   + T V   D  E G   P ++                 E+ A+        G+G V                R+V+V G  CPCGGTHV  T+E++GV++  VK+K    R+SY++
Sbjct:   35 ATVLAIGPDAKGTGWSVKLDRTCFHPQGGGQPADQGTISACEGGGTFAVSMVSKDKAGVVSH----DGPEEPSLKVGDSVTCTVDEASRRKNARVHSAGHLIDVAMTNAKCN--LRPTKGYHFTPGSYVEYDGKLEAA-ERDALLPKLQASMDELIGQALPTKVLTVDASELGQHCPPNALP---------------EDRALW-------GKGWV----------------RVVSVGGQGCPCGGTHVYDTKELKGVKVEAVKSKGKITRISYSM 264          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: AA_TRNA_LIGASE_II_ALA (domain-containing protein n=2 Tax=Actinomadura TaxID=1988 RepID=A0A850JLN8_9ACTN)

HSP 1 Score: 133 bits (334), Expect = 4.690e-32
Identity = 94/272 (34.56%), Postives = 131/272 (48.16%), Query Frame = 1
Query:    4 EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
            +AT++ V  DD   + ++LD TIF+PQGGGQP+D G +      + V +V  V G + H G   G     L+AG+   L++D   R +HA+LH+ GH V  AV   VG   + P KGYHF + PYVE+   LP   E+ +F  K    +D +V  + E      + +                      G   + V V AE         +PA          G  TR+V  AG   PCGGTHVR   E+ G+++  VK K G  RVSYT+A
Sbjct:   17 DATIVRV-HDDGGETTVVLDETIFYPQGGGQPTDRGRLTTARGGLDVRRVAFVNGEVLHIGPAEGV----LDAGQTVRLSVDPEVRRQHALLHTGGHLVMTAVDRLVG---YHPTKGYHFPNGPYVEFGSALPVE-ERASFAAKVQDVMDGMVAEDSEVTSYFCEPD----------------------GLRADGVHVPAE---------IPA----------GKPTRVVVTAGYRSPCGGTHVRRLGELAGLKVRNVKVKSGRTRVSYTVA 238          
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Alanyl-tRNA (synthetase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDV3_CAPO3)

HSP 1 Score: 131 bits (329), Expect = 8.470e-31
Identity = 99/275 (36.00%), Postives = 133/275 (48.36%), Query Frame = 1
Query:   37 SQGSAIILDRTIFHPQGGGQPSDEGTIACGD------CTVPVSKVRDVGGVIYHYGT-----ISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGA--ATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
            S G  ++LD TI HPQGGGQPSD G I            V V   +    V++HYG+     +         AG P ++ +D +KR  HA LHSAGH +D AV      G+  P KGYHF D P VEY G L   + +D      N EL +L+    +  VK               +S  EG      G G    A  A          VPA  T+    +Y +  A R+V + G+ CPCGGTHV+S  +++ V++TKVK  KGTL+V Y ++P
Sbjct:   45 SPGLDLVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDDAALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGLV-PSKGYHFPDGPNVEYLGELEQTV-RDGLPAALNIELQRLIATGGDVQVKYVP------------TSTLEG-----GGSGHSLAAPSA----------VPAQETSEP-LRYDSPDAVRMVNIGGVECPCGGTHVKSIGDLQNVKVTKVKRAKGTLKVYYEVSP 289          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar1.920e-17996.77to ATP binding / alanine-tRNA ligase n=1 Tax=Ectoc... [more]
Uncharacterized7.060e-5296.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
tRNA_SAD1.170e-4890.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Alanyl-tRNA6.300e-4338.35editing protein AlaX-M-like protein n=1 Tax=Tribon... [more]
Hypothetical4.470e-3536.19protein n=3 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Threonine/alanine5.570e-3538.93tRNA ligase subfamily protein n=1 Tax=Acanthamoeba... [more]
Hypothetical3.340e-3435.77protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical3.640e-3237.09protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
AA_TRNA_LIGASE_II_ALA4.690e-3234.56domain-containing protein n=2 Tax=Actinomadura Tax... [more]
Alanyl-tRNA8.470e-3136.00synthetase n=2 Tax=Capsaspora owczarzaki (strain A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10574contigEcto-sp9_F_contig10574:161..3928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.7e-54
Seed eggNOG ortholog2880.D7FQB2
EggNOG free text desc.Threonyl and Alanyl tRNA synthetase second additional domain
EggNOG OGs2S23F@2759,COG2872@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to ATP binding / alanine-tRNA ligase
Ec32 orthologEc-01_006770.1
Exons5
Model size1608
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928273.9473963-UTR-Ecto-sp9_F_contig10574:160..2691622928273.9473963-UTR-Ecto-sp9_F_contig10574:160..269Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 161..269 +
1692277816.660561-UTR-Ecto-sp9_F_contig10574:160..2691692277816.660561-UTR-Ecto-sp9_F_contig10574:160..269Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 161..269 +
1622928273.968014-UTR-Ecto-sp9_F_contig10574:903..10131622928273.968014-UTR-Ecto-sp9_F_contig10574:903..1013Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 904..1013 +
1692277816.6721087-UTR-Ecto-sp9_F_contig10574:903..10131692277816.6721087-UTR-Ecto-sp9_F_contig10574:903..1013Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 904..1013 +
1622928273.9830287-UTR-Ecto-sp9_F_contig10574:1785..20011622928273.9830287-UTR-Ecto-sp9_F_contig10574:1785..2001Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 1786..2001 +
1692277816.6816254-UTR-Ecto-sp9_F_contig10574:1785..20011692277816.6816254-UTR-Ecto-sp9_F_contig10574:1785..2001Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 1786..2001 +
1622928274.016801-UTR-Ecto-sp9_F_contig10574:2271..22981622928274.016801-UTR-Ecto-sp9_F_contig10574:2271..2298Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 2272..2298 +
1692277816.6910093-UTR-Ecto-sp9_F_contig10574:2271..22981692277816.6910093-UTR-Ecto-sp9_F_contig10574:2271..2298Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 2272..2298 +
1622928274.0610676-UTR-Ecto-sp9_F_contig10574:3196..39281622928274.0610676-UTR-Ecto-sp9_F_contig10574:3196..3928Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 3197..3928 +
1692277816.723905-UTR-Ecto-sp9_F_contig10574:3196..39281692277816.723905-UTR-Ecto-sp9_F_contig10574:3196..3928Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10574 3197..3928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.0306723-CDS-Ecto-sp9_F_contig10574:2298..23371622928274.0306723-CDS-Ecto-sp9_F_contig10574:2298..2337Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10574 2299..2337 +
1692277816.7023897-CDS-Ecto-sp9_F_contig10574:2298..23371692277816.7023897-CDS-Ecto-sp9_F_contig10574:2298..2337Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10574 2299..2337 +
1622928274.045193-CDS-Ecto-sp9_F_contig10574:2821..31961622928274.045193-CDS-Ecto-sp9_F_contig10574:2821..3196Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10574 2822..3196 +
1692277816.7129006-CDS-Ecto-sp9_F_contig10574:2821..31961692277816.7129006-CDS-Ecto-sp9_F_contig10574:2821..3196Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10574 2822..3196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10574.523.1prot_Ecto-sp9_F_contig10574.523.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10574 2299..3196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10574.523.1

>prot_Ecto-sp9_F_contig10574.523.1 ID=prot_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp
MANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERG
GRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGV
RITKVKAKKGTLRVSYTLAPSSSPSSSSPSSSSARPS*
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mRNA from alignment at Ecto-sp9_F_contig10574:161..3928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10574.523.1 ID=mRNA_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10574:161..3928+ (Ectocarpus species9 EcSCA_722f female)
ACAGAGGCGACGGTCTTGGGCGTGGTCGAAGATGACTCCCAAGGTTCTGC GATCATTTTGGACCGCACGATCTTCCACCCTCAGGGCGGGGGGCAGCCAA GCGATGAAGGTGCATGGTGCGCCGGGCTGATTATGGACGTACCGTTATAC CTGTCCCCTGTGGCAAAATGTTTTGGAGTGGTGGGGGTAGCACGTGTTTC AAGCGACTTTGGAATCTAATGGTTTGATTCGGTTTCTAAATGACGATTCA ACATGCCGTCTCCGGTTTGAATGTACGCCGTCCATGAGAAGAGTTGTCGA CAGCGGGTGACGTTCCAATTAAGCCAGACGCTGCCTGGCCGCTCGTCTGA TAATTTTACACACAACCAGCACAAGCTCACAGTGAAGTGGTAGTTTATCG CGTTGAGGCACGTCAACTCTCACTACAGTCAGGATGTTGTGGTTTTGTAG TTTAGTTGTGCTTCGCTTTCCTTCCCGCCGTTGACACTTACTTGTGCCTT CGTACGAGATCGTGTGATCGAGTCTGTCTTGTCACACCAAAAGTCTGTTG ACCCTACATTTTGTTCTGCCGATTGAAACACCGACCAAAACCTCGTTTGT GAGGCCAAGGCCCACGCGGCATCCCCGAATACATTACTAGTTGTCGTATT CCTGCCGTGAAAACGATTGACCGTAGGCCTGCTCATATGCCCTTGGTTCT TCTCTAAATATATGTCGTTGTCGCACTACCTAATTTCATGCAGGAACCAT CGCGTGCGGAGACTGCACCGTGCCTGTGAGCAAGGTTAGAGACGTGGGTG GCGTGATTTACCACTACGGGACGATCTCGGGAACACCACAACCTCGGCTG GAGGTAAGCGCACGGCCCGTCGTCGTCCAGCAGCAATGGTCAATCAGAAT GCAACACGACCAAAGAACGCAATGTGCAAACTTCTTTTCGCGCGAGCGCG TCGGCGTCGGGAGTATATGGTGGAATCCGCGTTCGTTTCCAGTTGATCAC GCCGCCAAGGCGGCCCGATCGATCCAGGCATTCCCATCGATCTCTGGAAT CGTTATTTTGTTGTTCGCTCATTAGCCGAAATCTAGCCGGTAGTCACAGA CCAGGCGATGAAACCCCCTCGCCAGGTCTTACGGCTCAGGAACATTTTTT TTGTTGTTCCCGTGCAGACCCTCCCATCAGTGGCAGTTTTTGGCCCGGAA TGTATGGGCATATGCATCGAACGTTCTCGGCCAAGAGGAAACAGTTCACT TCTGTGGGATAGGGTTCTCGGGGAATCCTCCGAGTCATTCACGTGCCCGT GCGTTCGTGCGTGCGTGGGGGTGTGTTGGCTAGAGTCTGGTGGCGTCCCG ATTGCTTGGTTGCCTTGTCGCACGTACGGGGCGGACGTATGACTCGATGG TATCCTTCGCTATCCTGGGTATCCTTCATCCTCAGCATCAATCGGCCTCA TGCACGCGCGTACCGAACTAACCAGCCCACAAATCGGCGCGCGCAACCAT TAACAGCGCCACCATCGTTCGTTATCAAGACGAACAGCGGGTCGCCCTCC TTCCTTTCGTGCCTATCCACCCACCGCCCCCCCCCCCTACCGCTCGCGTT TTTTCCGGCCCTCGTGGAAGAACAGGCGGGCCGGCCAGCATCCCTGGCGC TGGACAGCGCCAAGCGACTGAGGCACGCGGTTCTGCACTCGGCGGGGCAC GCGGTCGACAAGGCTGTCGTGGGCGCGGTGGGCGCGGGCGTGTTCTCGCC GCTCAAGGGCTACCACTTCGACGACTCGCCCTACGTGGAGTACCGAGGCA CCTTACCGGCAGGCCTGGAGAAGGATGCCTTCATCGAGAAGGTATAAATG CTACATAATGAGTGGTAGTAGAGCGCTATGTACAGAGATAATTTGCAGCC TTCTGACCCTCGGCGAGAAGCTGAGCCTGATGCTGCTATTGTATCGTTTT TTTTTTTGGTCTTTACTTCAAATTAGCGCTCACAGCACTTATGCCTTTTA CTCCAACCCGTGGTCACACAGAAGGGTTCCAGACTAGATAGTTTCAATTA CAAGTCAGCTTTTAACCTCTTCTTGCCTGTTGCGTCTATATGTACGTCAC TCACGCCACAGTGTAACAGCGAGCTCGACAAGCTGGTGATGGCGAATATG GAGACTGTGGTCAAGATGGCGGATCAGGTGCGTGCGTGGGGCCCAGGGGG CGGGGGCGGCATGGCGGGGAGCATGCTCCACGACGGGTCGTCGAGTCTCG TGTGTGGTGCGGCCCCTTTGGGGGGAAAGCATTGACCAAACTAGCGGCGG ATGCACACAGCTATGCATAGTAGTCCAAAGAGTGCGGGTGCTGGTGCTTC GGACACTGTATCCCACCGGATAACGGACTACAAAAGTTTGTGCTTTCGAA GTGTTTTTTTGGCATTGACCGTATATTTTTCACTTTTGGGTACCACCCCC CACACACACTGAAGTAGTGCGTTTACTGCTGCGCGAATGCTCTGCACAAC GGCGGTTGGTTATGCCTGGATGCATTCGAGGACGCTCTCTCCGAATCATG TGCAAGAACAGAGTAGGAGGAAGAAGATTGGCGAGTGTAGTTCGCTCCTG AATGATTCGACACTTGGTTTCTTCGCTCCGCTTGTCTGTCTCGCGTGCAC AATAATGGTAGGAACACGGCGATGAGGCTCCATCGTCGTCGTCGTCATCA GCACAAGAAGGTCCCGCGAGAGGGGCGGCAGGCAGAGGCAGGGAGGAGGT AGCAGTAGTAGCAGAGCGAGGAGGAAGAGGGGGGAGGGGGAAGGTGCCGG CGTCATCAACCGCGGCGGCAGCGACTAAGTATGGCGCGGCGACGCGCATC GTGACGGTGGCCGGCCTCTCCTGCCCCTGCGGCGGAACCCACGTACGGAG TACCAGAGAGATGGAGGGCGTGCGCATCACCAAGGTCAAGGCCAAGAAGG GCACTCTTCGTGTCAGCTACACTCTCGCGCCCTCCTCCTCCCCCTCCTCC TCCTCCCCCTCCTCCTCCTCCGCCCGGCCATCATAGTCACAAATAGATAT ATGCCACGTCAGAATATTGTTCTTGAGGCCGAAAGTTGATAGATGAATGA TCGTGCACCAACCTGTGTGTGCGTGTAATTGTTTTTGTGTGTGTTTACAC GCAGTAGTTGATGTGTCACAGGTGGTGTGAGGTTTTTCGTGCATTTACCG GTTACGCTGTCCGCGTTGTTGGCGTACCGTGATCAGTGGCCGTACACCCG TGCGTGCAATCTGCGCCATGCTTCGGTCCATGTCCTCACTGCTGCGGAAC TTGTGCCGTGTTACAAATTTGTTGGTGCTGGGGTGTGCCCTTCTCGTTAT CACACCCGATTAAGGGAGGATAAGGACATGTATGTGGAATCCACTGAATC TCCGTCGTATCTTGACTTATAATAAATCTCTCACGTTGCGGAAGTACCGT AGGAGAATGAGATGTCACACCCGCTTGGACCAAGTTTCGATGACTGAACA GCGAAGAGGGCACGAACAGGACAGGTGCATTTTTGTCGGAAAGATCTCGA CGAGACGATTCCAACGCCGCCATTTTCGGCGCAGAGTGGGACGGAAGTAA ACGACATGCGCAGCAGTGTCGAGTAGCGTGTTGTTGCCGAAAAAGGTGGA CATGACGATATTTTTTTTCTGGTGGCACAGTCAGTCTCTACTCTGTCTTG TGTTTACCGACGGCTGGCCAAGCACTGATTCTTCGCCTGCTTGTAGGCCG TACTAGTTTTTGAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10574:161..3928+

>mRNA_Ecto-sp9_F_contig10574.523.1 ID=mRNA_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10574:161..3928+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGAATATGGAGACTGTGGTCAAGATGGCGGATCAGATGGCGAATAT
GGAGACTGTGGTCAAGATGGCGGATCAGGAACACGGCGATGAGGCTCCAT
CGTCGTCGTCGTCATCAGCACAAGAAGGTCCCGCGAGAGGGGCGGCAGGC
AGAGGCAGGGAGGAGGTAGCAGTAGTAGCAGAGCGAGGAGGAAGAGGGGG
GAGGGGGAAGGTGCCGGCGTCATCAACCGCGGCGGCAGCGACTAAGTATG
GCGCGGCGACGCGCATCGTGACGGTGGCCGGCCTCTCCTGCCCCTGCGGC
GGAACCCACGTACGGAGTACCAGAGAGATGGAGGGCGTGCGCATCACCAA
GGTCAAGGCCAAGAAGGGCACTCTTCGTGTCAGCTACACTCTCGCGCCCT
CCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCGCCCGGCCATCA
TAGGAACACGGCGATGAGGCTCCATCGTCGTCGTCGTCATCAGCACAAGA
AGGTCCCGCGAGAGGGGCGGCAGGCAGAGGCAGGGAGGAGGTAGCAGTAG
TAGCAGAGCGAGGAGGAAGAGGGGGGAGGGGGAAGGTGCCGGCGTCATCA
ACCGCGGCGGCAGCGACTAAGTATGGCGCGGCGACGCGCATCGTGACGGT
GGCCGGCCTCTCCTGCCCCTGCGGCGGAACCCACGTACGGAGTACCAGAG
AGATGGAGGGCGTGCGCATCACCAAGGTCAAGGCCAAGAAGGGCACTCTT
CGTGTCAGCTACACTCTCGCGCCCTCCTCCTCCCCCTCCTCCTCCTCCCC
CTCCTCCTCCTCCGCCCGGCCATCATAG
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