mRNA_Ecto-sp9_F_contig10574.523.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Similar (to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI) HSP 1 Score: 515 bits (1326), Expect = 1.920e-179 Identity = 270/279 (96.77%), Postives = 274/279 (98.21%), Query Frame = 1
Query: 1 TEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSSPS 837
+EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTI CGDCTVPVSKVRDVGGVIYHYGT+SGTPQPRLEAGRPASLALDSAKRLRHA LHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMET+VKMADQEHGDEAPSSSSSSAQEGP+RGAAGRGREEV VVAERGGRGGRGKVPASSTAAAATKYGAATR VTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSS S
Sbjct: 11 SEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSSSS 289
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE) HSP 1 Score: 182 bits (461), Expect = 7.060e-52 Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1
Query: 220 AGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQ 501
AGRP SLALDSAKRLRHAVLHSAGHAVDKAV GAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLV+ANMETVVKMADQ
Sbjct: 11 AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMADQ 104
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: tRNA_SAD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV6_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.170e-48 Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 1
Query: 499 QEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSS 828
+EHGDEAPSSS+SSAQEGPARGAAG GREEVAVVAE GR G+G VPAS TAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITK KAKKGT+RVSYTLAPSS
Sbjct: 21 EEHGDEAPSSSASSAQEGPARGAAGTGREEVAVVAEPEGRRGKGNVPASLTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKAKAKKGTIRVSYTLAPSS 130
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Alanyl-tRNA (editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA) HSP 1 Score: 162 bits (409), Expect = 6.300e-43 Identity = 102/266 (38.35%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 25 VEDDSQGSAIILDRTIFHPQGGGQPSDEGTIAC-GDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
V DD A++LDRT+FHPQGGGQP+D GT+ + V+ V+ G VI H+G G +L+ G ++D +RL+ A LHSAGHA+D AV A G P KGYHF+D PYVEY G L A ++ ++K N+EL L+ A +ET V+ ++ A R+V+V G +CPCGGTHVRST E+ G+R+TK KAK G LRVSYT+A
Sbjct: 24 VRDD----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFGQ-HGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE-----------------------------------------------------------AGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTIA 223
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA) HSP 1 Score: 142 bits (359), Expect = 4.470e-35 Identity = 97/268 (36.19%), Postives = 132/268 (49.25%), Query Frame = 1
Query: 34 DSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTI---SGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAAT-RIVTVAGL-SCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
D A+ILDRT+FH QGGGQP+D GTI V+ VR G ++H+G+ G AG L++D KR+ HA HSAGHA+D AV G + KGYHF D PYVEY G L + K+ ++ N ++ +++ ++ T V E K + A + A T R+VTVAG +CPCGGTHVRST E+ GV +TKVK+KKG ++VSY++ P
Sbjct: 57 DDATHAVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEA----------------------------------------KAACGTPDADFSHITAPTIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVTP 282
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Threonine/alanine (tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA) HSP 1 Score: 142 bits (357), Expect = 5.570e-35 Identity = 102/262 (38.93%), Postives = 135/262 (51.53%), Query Frame = 1
Query: 49 AIILDRTIFHPQGGGQPSDEGTIA-CGDCTVPVSKVRD--VGGVIYHYGTIS--GTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTV-AGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
A++LDRTIFHPQGGGQP D G +A VS+VR GVI H GT + GT +AG L +D AKR HA LHSAGH +DKAV P KGYHF D+PYVEY+GT ++ + +++ E ++L+ E V++ H +EEV + AS + A T+ R+VTV A L CPCGGTHV++T E+ + I K+ AKKG +R+SYTL
Sbjct: 43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFAEAGTT---FQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVV---HS-----------------------KEEVERLCG----------SASDSGANPTEP---VRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA) HSP 1 Score: 140 bits (354), Expect = 3.340e-34 Identity = 98/274 (35.77%), Postives = 145/274 (52.92%), Query Frame = 1
Query: 1 TEATVLGVVEDDSQGSA-IILDRTIFHPQGGGQPSDEGTIAC--GDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMET-VVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSY 810
T A V+ V G +ILD+T+FHPQGGGQP+D+G ++ G+ V + K G+++H+G++ G+ LEAG +D R + LHSAGHA+D A+ +G+ +P KGYHF D+PYVEY GTL A EKD+ E+ +EL ++ + + VV ++ E + P ++ V++ E GA R+V V G CPCGGTHV + E+E V +T++KAKKGT++VSY
Sbjct: 61 TPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSM-GSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTL-AAEEKDSLQERLTNELQSIIEKQVPSKVVYLSAPEVLELCPGAN-------------------VSIFPE----------------------GAMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSY 290
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA) HSP 1 Score: 134 bits (337), Expect = 3.640e-32 Identity = 102/275 (37.09%), Postives = 141/275 (51.27%), Query Frame = 1
Query: 7 ATVLGVVED-DSQGSAIILDRTIFHPQGGGQPSDEGTI-AC-GDCTVPVSKV-RDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMAD-QEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTL 816
ATVL + D G ++ LDRT FHPQGGGQP+D+GTI AC G T VS V +D GV+ H G +P L+ G + +D A R ++A +HSAGH +D A+ A P KGYHF YVEY G L A E+DA + K + +D+L+ + T V D E G P ++ E+ A+ G+G V R+V+V G CPCGGTHV T+E++GV++ VK+K R+SY++
Sbjct: 35 ATVLAIGPDAKGTGWSVKLDRTCFHPQGGGQPADQGTISACEGGGTFAVSMVSKDKAGVVSH----DGPEEPSLKVGDSVTCTVDEASRRKNARVHSAGHLIDVAMTNAKCN--LRPTKGYHFTPGSYVEYDGKLEAA-ERDALLPKLQASMDELIGQALPTKVLTVDASELGQHCPPNALP---------------EDRALW-------GKGWV----------------RVVSVGGQGCPCGGTHVYDTKELKGVKVEAVKSKGKITRISYSM 264
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: AA_TRNA_LIGASE_II_ALA (domain-containing protein n=2 Tax=Actinomadura TaxID=1988 RepID=A0A850JLN8_9ACTN) HSP 1 Score: 133 bits (334), Expect = 4.690e-32 Identity = 94/272 (34.56%), Postives = 131/272 (48.16%), Query Frame = 1
Query: 4 EATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTIACGDCTVPVSKVRDVGGVIYHYGTISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGAATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 819
+AT++ V DD + ++LD TIF+PQGGGQP+D G + + V +V V G + H G G L+AG+ L++D R +HA+LH+ GH V AV VG + P KGYHF + PYVE+ LP E+ +F K +D +V + E + + G + V V AE +PA G TR+V AG PCGGTHVR E+ G+++ VK K G RVSYT+A
Sbjct: 17 DATIVRV-HDDGGETTVVLDETIFYPQGGGQPTDRGRLTTARGGLDVRRVAFVNGEVLHIGPAEGV----LDAGQTVRLSVDPEVRRQHALLHTGGHLVMTAVDRLVG---YHPTKGYHFPNGPYVEFGSALPVE-ERASFAAKVQDVMDGMVAEDSEVTSYFCEPD----------------------GLRADGVHVPAE---------IPA----------GKPTRVVVTAGYRSPCGGTHVRRLGELAGLKVRNVKVKSGRTRVSYTVA 238
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Match: Alanyl-tRNA (synthetase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDV3_CAPO3) HSP 1 Score: 131 bits (329), Expect = 8.470e-31 Identity = 99/275 (36.00%), Postives = 133/275 (48.36%), Query Frame = 1
Query: 37 SQGSAIILDRTIFHPQGGGQPSDEGTIACGD------CTVPVSKVRDVGGVIYHYGT-----ISGTPQPRLEAGRPASLALDSAKRLRHAVLHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGGRGGRGKVPASSTAAAATKYGA--ATRIVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAP 822
S G ++LD TI HPQGGGQPSD G I V V + V++HYG+ + AG P ++ +D +KR HA LHSAGH +D AV G+ P KGYHF D P VEY G L + +D N EL +L+ + VK +S EG G G A A VPA T+ +Y + A R+V + G+ CPCGGTHV+S +++ V++TKVK KGTL+V Y ++P
Sbjct: 45 SPGLDLVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDDAALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGLV-PSKGYHFPDGPNVEYLGELEQTV-RDGLPAALNIELQRLIATGGDVQVKYVP------------TSTLEG-----GGSGHSLAAPSA----------VPAQETSEP-LRYDSPDAVRMVNIGGVECPCGGTHVKSIGDLQNVKVTKVKRAKGTLKVYYEVSP 289 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10574.523.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10574.523.1 >prot_Ecto-sp9_F_contig10574.523.1 ID=prot_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp MANMETVVKMADQEHGDEAPSSSSSSAQEGPARGAAGRGREEVAVVAERGback to top mRNA from alignment at Ecto-sp9_F_contig10574:161..3928+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10574.523.1 ID=mRNA_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10574:161..3928+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10574:161..3928+ >mRNA_Ecto-sp9_F_contig10574.523.1 ID=mRNA_Ecto-sp9_F_contig10574.523.1|Name=mRNA_Ecto-sp9_F_contig10574.523.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10574:161..3928+ (Ectocarpus species9 EcSCA_722f female)back to top |