mRNA_Ecto-sp9_F_contig10534.499.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10534.499.1
Unique NamemRNA_Ecto-sp9_F_contig10534.499.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10534.499.1 vs.
Match: Putative (2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.440e-45
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:    4 SGGGSGEDISSWTARWREMYGIGKATDDPSSSLDKVVGVPRQARARIAHILYDHGSLVREVEESFGIEIIPVPRTLEQAKLPRIRR 261
            SGGGSGED+SSWTARWRE+YG GKATD+P SSLDKVVGVPRQARARI HILYDHGSLVREVEESFG+EIIPVPRTLEQAKLPRIRR
Sbjct: 1181 SGGGSGEDVSSWTARWRELYGTGKATDEPPSSLDKVVGVPRQARARIVHILYDHGSLVREVEESFGMEIIPVPRTLEQAKLPRIRR 1266
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BLAST of mRNA_Ecto-sp9_F_contig10534.499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.860e-44
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:    4 SGGGSGEDISSWTARWREMYGIGKATDDPSSSLDKVVGVPRQARARIAHILYDHGSLVREVEESFGIEIIPVPRTLEQAKLPRIRR 261
            SGGGSG DISSWTARWREMYGIGKATD+PSSSLDKVVGVPRQARARI HILYDH SLVREVEESFGIEIIPVPRTLEQAKLPRIRR
Sbjct:  441 SGGGSG-DISSWTARWREMYGIGKATDEPSSSLDKVVGVPRQARARIVHILYDHDSLVREVEESFGIEIIPVPRTLEQAKLPRIRR 525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10534.499.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Putative4.440e-4591.862-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Ta... [more]
Uncharacterized3.860e-4495.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10534contigEcto-sp9_F_contig10534:2008..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.0853672-CDS-Ecto-sp9_F_contig10534:2007..20971622928267.0853672-CDS-Ecto-sp9_F_contig10534:2007..2097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10534 2008..2097 -
1692277815.1258466-CDS-Ecto-sp9_F_contig10534:2007..20971692277815.1258466-CDS-Ecto-sp9_F_contig10534:2007..2097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10534 2008..2097 -
1622928267.098587-CDS-Ecto-sp9_F_contig10534:2642..28311622928267.098587-CDS-Ecto-sp9_F_contig10534:2642..2831Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10534 2643..2831 -
1692277815.1340442-CDS-Ecto-sp9_F_contig10534:2642..28311692277815.1340442-CDS-Ecto-sp9_F_contig10534:2642..2831Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10534 2643..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10534.499.1prot_Ecto-sp9_F_contig10534.499.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10534 2008..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10534.499.1

>prot_Ecto-sp9_F_contig10534.499.1 ID=prot_Ecto-sp9_F_contig10534.499.1|Name=mRNA_Ecto-sp9_F_contig10534.499.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
CSGGGSGEDISSWTARWREMYGIGKATDDPSSSLDKVVGVPRQARARIAH
ILYDHGSLVREVEESFGIEIIPVPRTLEQAKLPRIRRVRMGA*
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mRNA from alignment at Ecto-sp9_F_contig10534:2008..2831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10534.499.1 ID=mRNA_Ecto-sp9_F_contig10534.499.1|Name=mRNA_Ecto-sp9_F_contig10534.499.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=824bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10534:2008..2831- (Ectocarpus species9 EcSCA_722f female)
TGCAGCGGTGGCGGTAGCGGCGAGGATATTTCCTCGTGGACGGCCCGTTG
GCGCGAGATGTACGGGATCGGCAAGGCGACCGACGATCCGTCGTCGTCGC
TGGACAAGGTGGTGGGCGTCCCGCGTCAGGCTAGGGCGAGGATCGCGCAC
ATCTTGTACGACCACGGTTCGTTGGTCAGGGAGGTGGAGGTGAGAAACGT
GTCATGGAGCGAGCGGCGAGGGCCCTGGGTTCTGGTGCCGGTGTTGTTGT
TGTTGTTGTTATTGTGGTGGTGGGCGTTGCAGGCGTAGGCGTAGGTTCGT
GACAAAAGGGTAGCAGAAAGAAGCACGCAGACACGAGGTTCTGGGACATG
GGACAAACAGACGGGGCTGGGACGGCGGGTCTACGCACCTCTCTCGTGAT
TCGTCTGATAGGCGGACTACTTGACTCGAATATAATTTTGTCGTGTCCAA
GTCCGTGTTGCCCGTTTCGTTTCTTTGCTTTGCCCCGAAAGAAGGAATGA
TTTCTCTCTCCCCCTTTTCTCTGCCTTCCCAACGCAATATCTTGCCTCCT
CTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCACT
GTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCT
GTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTGTCTCCTTTATGTCGGCG
GTGTCTCCGGTTGTGCCACGGTTGCGCCTTTCAGGAGAGCTTCGGGATAG
AAATTATCCCTGTCCCGCGGACGCTAGAGCAGGCGAAACTGCCCCGAATA
CGCCGGGTGAGGATGGGTGCATAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10534:2008..2831-

>mRNA_Ecto-sp9_F_contig10534.499.1 ID=mRNA_Ecto-sp9_F_contig10534.499.1|Name=mRNA_Ecto-sp9_F_contig10534.499.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10534:2008..2831- (Ectocarpus species9 EcSCA_722f female)
TGCAGCGGTGGCGGTAGCGGCGAGGATATTTCCTCGTGGACGGCCCGTTG
GCGCGAGATGTACGGGATCGGCAAGGCGACCGACGATCCGTCGTCGTCGC
TGGACAAGGTGGTGGGCGTCCCGCGTCAGGCTAGGGCGAGGATCGCGCAC
ATCTTGTACGACCACGGTTCGTTGGTCAGGGAGGTGGAGTGCAGCGGTGG
CGGTAGCGGCGAGGATATTTCCTCGTGGACGGCCCGTTGGCGCGAGATGT
ACGGGATCGGCAAGGCGACCGACGATCCGTCGTCGTCGCTGGACAAGGTG
GTGGGCGTCCCGCGTCAGGCTAGGGCGAGGATCGCGCACATCTTGTACGA
CCACGGTTCGTTGGTCAGGGAGGTGGAGGAGAGCTTCGGGATAGAAATTA
TCCCTGTCCCGCGGACGCTAGAGCAGGCGAAACTGCCCCGAATACGCCGG
GTGAGGATGGGTGCATAAGAGAGCTTCGGGATAGAAATTATCCCTGTCCC
GCGGACGCTAGAGCAGGCGAAACTGCCCCGAATACGCCGGGTGAGGATGG
GTGCATAA
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