mRNA_Ecto-sp9_F_contig1048.455.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1048.455.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ87_ECTSI) HSP 1 Score: 770 bits (1989), Expect = 1.480e-273 Identity = 446/686 (65.01%), Postives = 460/686 (67.06%), Query Frame = 1
Query: 202 MDSDGKPVGVEGSPLFFDGDNISVSSTRRGGVHQDGLDAE-VSSVATTTGTATTVSLVATNYLGDGSISTFEPSTLVEVGNETVRLDLRIRDWSFCSPFGRDGGRRCMAEPQDIFLQNEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECADIVSVKYYLGEADQDPGQAPNTATIGVARGSGENGTSTGSSGALEEFWGTGVYERNLTSAEVGSFLNVSSLTPGLDYVFWAVWEHGNGSAPESNSRDFDLSRVQYWQCPGTTIERNFEVGASLSVSLVVNGSTALVPLCGDSVSASSPDSSNTXXXXXXXXXXXXXXXXXSCQKIGTDGVATETSGPSRRLSAPGDESHPSPALPARQGRGYRLLQEDQGTNASLDETEGGAGWTWDSDGPIFGLGELSRIRLSSHVLLLGDDDNDSSDYGEWAPLRNTSSWVATAAAGATENREEGRGGRAGVITASLEPFDSQAVFSALLFFSKVEIVQEESDTGVEAATWVAIAFGFLLLWLLGCYGVRLAKHRHAAKTWPSAVARAAAARSHGGLFDDDASSFGSPTSSEADSSMGGVKELQIFPMMMKAASKSKLEFSDRSDAVRITSAEEDEQSLCAPKAPGWTTPGSGSLNCIHDQNISSSXXXXXXAGSNRNVDNGNMASGVFPSPPPFHYRVPAEAFPLTDAMLELPV 2256
MDSDGKPVGVEGSPLFFD DNISVSSTRR GV+QDGLDAE VSSVATTTGTATTVSLVATNYLGDG+ISTFEPSTLVEVGNETVRLD+RIRDWSFC+PFGRDGGRRCMAEPQDIFLQNEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECAD+VSVKYYLGEADQDPGQAPNTATIGVARGSGENGTST SSGALEEFWGTGVYERNLT AEVGSFLNVSSLTPGLDYVFW+VWEHGNGSAPESNSRDFDL RVQYW GD R G G R D G +L RL+ VL + ++Q+ AATWVAIAFGFLLLWLLGCYGVRLAKHRHAAKTWPSAVARAAA RSHGGLFDDDASSFGSPTSSEADSSMGGVKELQIFPMMMKA KSKLEFSDRSDAVR TSAEEDEQS+CAPKAPGWTTPGSGSLNCIHDQN SS+XXXXXXA SNRNVDNGNMAS VFPSPPPFHYRVPAEAFPLTDAMLELPV
Sbjct: 1 MDSDGKPVGVEGSPLFFDSDNISVSSTRRSGVYQDGLDAEEVSSVATTTGTATTVSLVATNYLGDGNISTFEPSTLVEVGNETVRLDVRIRDWSFCTPFGRDGGRRCMAEPQDIFLQNEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECADVVSVKYYLGEADQDPGQAPNTATIGVARGSGENGTSTSSSGALEEFWGTGVYERNLTRAEVGSFLNVSSLTPGLDYVFWSVWEHGNGSAPESNSRDFDLPRVQYW----------------------------------------------------------------------------------------GDRE--------RGGGGGRPGGRDHGFAGAL--------------------------RLAGGVL-------------------------------------------------------------------RAVVLQQ-------AATWVAIAFGFLLLWLLGCYGVRLAKHRHAAKTWPSAVARAAA-RSHGGLFDDDASSFGSPTSSEADSSMGGVKELQIFPMMMKAEFKSKLEFSDRSDAVRSTSAEEDEQSICAPKAPGWTTPGSGSLNCIHDQNSSSNXXXXXXADSNRNVDNGNMASEVFPSPPPFHYRVPAEAFPLTDAMLELPV 489 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1048.455.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1048.455.1 >prot_Ecto-sp9_F_contig1048.455.1 ID=prot_Ecto-sp9_F_contig1048.455.1|Name=mRNA_Ecto-sp9_F_contig1048.455.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=753bp MRSLLHALPAALLSVLGGTSGAASQIQPAVVESFAHSALLSVRVVDGEPNback to top mRNA from alignment at Ecto-sp9_F_contig1048:12858..17893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1048.455.1 ID=mRNA_Ecto-sp9_F_contig1048.455.1|Name=mRNA_Ecto-sp9_F_contig1048.455.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5036bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:12858..17893- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1048:12858..17893- >mRNA_Ecto-sp9_F_contig1048.455.1 ID=mRNA_Ecto-sp9_F_contig1048.455.1|Name=mRNA_Ecto-sp9_F_contig1048.455.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4518bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:12858..17893- (Ectocarpus species9 EcSCA_722f female)back to top |