mRNA_Ecto-sp9_F_contig10476.451.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10476.451.1
Unique Name	mRNA_Ecto-sp9_F_contig10476.451.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR68_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.000e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query:    1 ASTVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR 186
            ASTVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR
Sbjct:  162 ASTVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR 223

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FCW2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.350e-8
Identity = 29/58 (50.00%), Postives = 45/58 (77.59%), Query Frame = 1

Query:   10 VAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIA 183
            V+ GA+  A  A +A+EAP VD ++P   + +RLH+G+R+RA LNM+HT+RH+QA+I+
Sbjct:  128 VSAGALAGAADA-EATEAPVVDDAKPKAVIAVRLHNGKRIRATLNMNHTIRHLQALIS 184

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7H8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.830e-8
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1

Query:   19 GAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            GA     GA +A+E P VD  +P+TTLQ+RLHDG R+R  LN+ HT+R + AII
Sbjct:  169 GAEAVIAGAAEAAERPVVDDKKPTTTLQLRLHDGTRLRETLNLDHTIRDLHAII 222

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: SEP (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC87_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1

Query:   40 GAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            GA +    P VD +QP TTLQIRL DGRR+RA+LN+ HTVR +QA I
Sbjct:  177 GADEVGAPPVVDDAQPVTTLQIRLADGRRLRARLNLSHTVRDVQAFI 223

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Protein (tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAT9_PLAHL)

HSP 1 Score: 53.1 bits (126), Expect = 1.670e-7
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1

Query:    7 TVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            T A  AV    G P  SE P  D  +P+TTLQIRLH+G+R+R  LNM HT+R + AII
Sbjct:    5 TYATDAVFRGDGMP--SERPVTDDKKPTTTLQIRLHNGQRLRETLNMDHTIRDLHAII 60

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Peroxin-1 (n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXI6_PYTIN)

HSP 1 Score: 53.1 bits (126), Expect = 1.480e-6
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   10 VAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            V  GAV++A      S+ P VD  QP+TTLQIRLH+G R+R  LN+ HTVR + AII
Sbjct: 1237 VVSGAVVSA------SDRPVVDDKQPTTTLQIRLHNGTRLRETLNLTHTVRDLHAII 1287

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLP8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-6
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1

Query:   40 GAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            GA   SE P +D  +P TTLQIRLH+G+R+R  LN+ HT+R + AII
Sbjct:  171 GAAVPSERPVIDDKKPKTTLQIRLHNGQRLRETLNLEHTIRDLHAII 217

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0N5D2_PHYIT)

HSP 1 Score: 52.4 bits (124), Expect = 2.250e-6
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1

Query:   58 EAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            E P +D  +PSTTLQIRLH+G+R+R  LN+ HTVR + AII
Sbjct:  175 ERPVIDDKKPSTTLQIRLHNGQRLRETLNLDHTVRDLHAII 215

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5Z0_GLOUD)

HSP 1 Score: 51.6 bits (122), Expect = 4.470e-6
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1

Query:    4 STVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            STVA  AV+   GA   +E P +D  +P TTLQIRLH+G R+R  LN+ HT+R + AII
Sbjct:  172 STVAADAVIQ--GATVPAERPVIDDKKPKTTLQIRLHNGTRLRETLNLDHTLRDLHAII 228

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BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRU2_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.150e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1

Query:   58 EAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 180
            E P VD  +P+TTLQ+RLH+G+R+R  LNM HT+R + AII
Sbjct:  172 ERPVVDDKKPTTTLQLRLHNGQRLRETLNMDHTLRDLHAII 212

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10476.451.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
Uncharacterized	4.000e-30	100.00	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR68...	[more]
Hypothetical	1.350e-8	50.00	protein n=1 Tax=Florenciella parvula TaxID=236787 ...	[more]
Uncharacterized	4.830e-8	53.70	protein n=1 Tax=Pythium brassicum TaxID=1485010 Re...	[more]
SEP	1.270e-7	61.70	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Protein	1.670e-7	53.45	tyrosine phosphatase SHP1/Cofactor for p97 ATPase-...	[more]
Peroxin-1	1.480e-6	54.39	n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2...	[more]
Uncharacterized	1.640e-6	55.32	protein n=2 Tax=Phytophthora kernoviae TaxID=32545...	[more]
Uncharacterized	2.250e-6	60.98	protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0N...	[more]
Uncharacterized	4.470e-6	52.54	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]
Uncharacterized	8.150e-6	58.54	protein n=1 Tax=Hyaloperonospora arabidopsidis (st...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10476	contig	Ecto-sp9_F_contig10476:3600..3788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	104.8
Seed ortholog evalue	1.3e-20
Seed eggNOG ortholog	2880.D7FR68
KEGG ko	ko:K14012
KEGG Pathway	ko04141,map04141
GOs	GO:0000045,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007030,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010256,GO:0010498,GO:0010921,GO:0016043,GO:0016236,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031323,GO:0031399,GO:0031468,GO:0032182,GO:0032268,GO:0035303,GO:0035304,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043666,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051603,GO:0060255,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575,GO:1905037
EggNOG free text desc.	nuclear envelope reassembly
EggNOG OGs	KOG2086@1,KOG2086@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	SEP domain
Ec32 ortholog	Ec-08_005200.1
Exons	1
Model size	189
Cds size	162
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928258.3846073-CDS-Ecto-sp9_F_contig10476:3599..3761	1622928258.3846073-CDS-Ecto-sp9_F_contig10476:3599..3761	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10476 3600..3761 -
1692277812.1675234-CDS-Ecto-sp9_F_contig10476:3599..3761	1692277812.1675234-CDS-Ecto-sp9_F_contig10476:3599..3761	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10476 3600..3761 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928258.4015388-UTR-Ecto-sp9_F_contig10476:3761..3788	1622928258.4015388-UTR-Ecto-sp9_F_contig10476:3761..3788	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10476 3762..3788 -
1692277812.1828594-UTR-Ecto-sp9_F_contig10476:3761..3788	1692277812.1828594-UTR-Ecto-sp9_F_contig10476:3761..3788	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10476 3762..3788 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10476.451.1	prot_Ecto-sp9_F_contig10476.451.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10476 3600..3761 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10476:3600..3788-
coding sequence from alignment at Ecto-sp9_F_contig10476:3600..3788-

protein sequence of mRNA_Ecto-sp9_F_contig10476.451.1

>prot_Ecto-sp9_F_contig10476.451.1 ID=prot_Ecto-sp9_F_contig10476.451.1|Name=mRNA_Ecto-sp9_F_contig10476.451.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=54bp
MTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAI
IAR*

mRNA from alignment at Ecto-sp9_F_contig10476:3600..3788-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10476.451.1 ID=mRNA_Ecto-sp9_F_contig10476.451.1|Name=mRNA_Ecto-sp9_F_contig10476.451.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10476:3600..3788- (Ectocarpus species9 EcSCA_722f female)
GCGTCCACGGTGGCGGAGGGTGCCGTGATGACCGCCACCGGAGCTCCCGA
CGCCTCGGAAGCGCCGGAAGTCGACGCCTCGCAGCCCTCCACGACGCTGC
AGATCCGGCTCCACGACGGGAGGCGCGTCAGGGCGCAGCTCAACATGCAC
CACACCGTGCGACACATCCAGGCCATCATCGCCAGGTAA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10476:3600..3788-

>mRNA_Ecto-sp9_F_contig10476.451.1 ID=mRNA_Ecto-sp9_F_contig10476.451.1|Name=mRNA_Ecto-sp9_F_contig10476.451.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10476:3600..3788- (Ectocarpus species9 EcSCA_722f female)
ATGACCGCCACCGGAGCTCCCGACGCCTCGGAAGCGCCGGAAGTCGACGC
CTCGCAGCCCTCCACGACGCTGCAGATCCGGCTCCACGACGGGAGGCGCG
TCAGGGCGCAGCTCAACATGCACCACACCGTGCGACACATCCAGGCCATC
ATCGCCAGGTAAATGACCGCCACCGGAGCTCCCGACGCCTCGGAAGCGCC
GGAAGTCGACGCCTCGCAGCCCTCCACGACGCTGCAGATCCGGCTCCACG
ACGGGAGGCGCGTCAGGGCGCAGCTCAACATGCACCACACCGTGCGACAC
ATCCAGGCCATCATCGCCAGGTAA