mRNA_Ecto-sp9_F_contig10471.448.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10471.448.1
Unique Name	mRNA_Ecto-sp9_F_contig10471.448.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530KJK8_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 1.810e-18
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 2

Query:    2 VGFPIRISSDQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            +GFPIR S+DQ +FA PR  SQRITSFIACA QGIH +PL HLI+LIANAH
Sbjct:    1 MGFPIRKSTDQRVFAPPRSLSQRITSFIACACQGIHQLPLRHLIVLIANAH 51

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A529P6P8_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 3.820e-18
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2

Query:    2 VGFPIRISSDQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            +GFPIR S+DQ +FA PR  SQRITSFIACA QGIH +PL HLI+LIAN H
Sbjct:    1 MGFPIRRSTDQRVFAPPRSLSQRITSFIACACQGIHQLPLRHLIVLIANIH 51

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=2 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A3S4F2B2_9HYPH)

HSP 1 Score: 79.0 bits (193), Expect = 7.350e-18
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2

Query:    2 VGFPIRISSDQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            +GFPIR S+DQ +FA PR  SQRITSFIACA QGIH +PL HLI+LIAN H
Sbjct:    1 MGFPIRKSTDQRVFAPPRSLSQRITSFIACACQGIHQLPLRHLIVLIANTH 51

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V5I2_9ROSI)

HSP 1 Score: 81.6 bits (200), Expect = 8.750e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1

Query:    1 GRFPHSDIIGSKLIRSSPTLFAAYHVLHRLCIPRHPLNALKSLDYSHC*CP 153
            G FPHS+I GSKL+RSSP L AAYHVLHRL  PRHP NALK+LD SH  CP
Sbjct:  120 GGFPHSEIPGSKLVRSSPRLIAAYHVLHRLSAPRHPPNALKALDRSHDRCP 170

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AZG3_BETVV)

HSP 1 Score: 79.0 bits (193), Expect = 3.010e-17
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 2

Query:    2 VGFPIRISSDQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            VG PIR S DQS FAAP  FSQRITSF ACA QGIH MPLSH  +LIANAH
Sbjct:   19 VGCPIRRSMDQSSFAAPHGFSQRITSFFACACQGIHQMPLSHFFVLIANAH 69

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YV95_PARTP)

HSP 1 Score: 76.3 bits (186), Expect = 3.070e-17
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 2

Query:    5 GFPIRISSDQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            GFPIR S+DQ +FA PR  SQRITSFIACA QGIH +PL HLI LIAN H
Sbjct:    1 GFPIRKSTDQRVFAPPRSLSQRITSFIACACQGIHQLPLRHLIDLIANTH 50

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L7Y8_LUPAL)

HSP 1 Score: 74.3 bits (181), Expect = 7.040e-15
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1

Query:    1 GRFPHSDIIGSKLIRSSPTLFAAYHVLHRLCIPRHPLNALKSLDYSHC*CP 153
            G FPHS+I GSKL+RSSP L AAYHVL RL  PRHP NALK+LD S   CP
Sbjct:   16 GGFPHSEIPGSKLVRSSPRLIAAYHVLLRLSAPRHPPNALKALDRSRDRCP 66

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BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sinorhizobium medicae TaxID=110321 RepID=A0A508WS37_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 2.680e-14
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 2

Query:   29 DQSLFAAPRRFSQRITSFIACASQGIH*MPLSHLIILIANAH 154
            DQSLFAAP  FSQRITSFIACA QGIH MP  HLI+LIANAH
Sbjct:    2 DQSLFAAPHGFSQRITSFIACACQGIHQMPFFHLIVLIANAH 43

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1

Query:    1 GRFPHSDIIGSKLIRSSPTLFAAYHVLHRLCIPRHPLNALKSLDYSHC*CP 153
            G FPHS+I GSKL+RSSP L AAYHVL RL  PRHP NALK+LD S   CP
Sbjct:  579 GGFPHSEIPGSKLVRSSPRLIAAYHVLLRLSAPRHPPNALKALDRSRDRCP 629

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sphingomonas sp. MM-1 TaxID=745310 RepID=M4S3I2_9SPHN)

HSP 1 Score: 67.4 bits (163), Expect = 1.910e-13
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1

Query:    7 FPHSDIIGSKLIRSSPTLFAAYHVLHRLCIPRHPLNALKS 126
            FPHS+I+GSK+  +SPTL AA HVLHRLC+PRHP NAL S
Sbjct:   23 FPHSEIVGSKVAHTSPTLIAACHVLHRLCMPRHPPNALTS 62

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10471.448.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.810e-18	74.51	protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 Re...	[more]
Uncharacterized	3.820e-18	72.55	protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 Re...	[more]
Uncharacterized	7.350e-18	72.55	protein n=2 Tax=Mesorhizobium sp. TaxID=1871066 Re...	[more]
Uncharacterized	8.750e-18	74.51	protein n=1 Tax=Castanea mollissima TaxID=60419 Re...	[more]
Uncharacterized	3.010e-17	76.47	protein (Fragment) n=1 Tax=Beta vulgaris subsp. vu...	[more]
Uncharacterized	3.070e-17	74.00	protein (Fragment) n=1 Tax=Parasteatoda tepidarior...	[more]
Uncharacterized	7.040e-15	70.59	protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A...	[more]
Uncharacterized	2.680e-14	83.33	protein n=1 Tax=Sinorhizobium medicae TaxID=110321...	[more]
Uncharacterized	2.980e-14	70.59	protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A...	[more]
Uncharacterized	1.910e-13	72.50	protein n=1 Tax=Sphingomonas sp. MM-1 TaxID=745310...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10471	contig	Ecto-sp9_F_contig10471:2846..2999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	68.2
Seed ortholog evalue	1.2e-09
Seed eggNOG ortholog	745310.G432_08665
EggNOG free text desc.	ORF located using Blastx
EggNOG OGs	2DSV3@1,33HII@2
COG Functional cat.	S
Best tax level	Bacteria
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	156
Cds size	147
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928258.1255114-CDS-Ecto-sp9_F_contig10471:2845..2992	1622928258.1255114-CDS-Ecto-sp9_F_contig10471:2845..2992	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10471 2846..2992 +
1692277812.099513-CDS-Ecto-sp9_F_contig10471:2845..2992	1692277812.099513-CDS-Ecto-sp9_F_contig10471:2845..2992	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10471 2846..2992 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928258.1421502-UTR-Ecto-sp9_F_contig10471:2992..2999	1622928258.1421502-UTR-Ecto-sp9_F_contig10471:2992..2999	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10471 2993..2999 +
1692277812.1098135-UTR-Ecto-sp9_F_contig10471:2992..2999	1692277812.1098135-UTR-Ecto-sp9_F_contig10471:2992..2999	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig10471 2993..2999 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10471.448.1	prot_Ecto-sp9_F_contig10471.448.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10471 2846..2992 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10471:2846..2999+
coding sequence from alignment at Ecto-sp9_F_contig10471:2846..2999+

protein sequence of mRNA_Ecto-sp9_F_contig10471.448.1

>prot_Ecto-sp9_F_contig10471.448.1 ID=prot_Ecto-sp9_F_contig10471.448.1|Name=mRNA_Ecto-sp9_F_contig10471.448.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=49bp
GRFPHSDIIGSKLIRSSPTLFAAYHVLHRLCIPRHPLNALKSLDYSHC*

mRNA from alignment at Ecto-sp9_F_contig10471:2846..2999+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10471.448.1 ID=mRNA_Ecto-sp9_F_contig10471.448.1|Name=mRNA_Ecto-sp9_F_contig10471.448.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=154bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:2846..2999+ (Ectocarpus species9 EcSCA_722f female)
GGTAGGTTTCCCCATTCGGATATCATCGGATCAAAGCTTATTCGCAGCTC
CCCGACGCTTTTCGCAGCGTATCACGTCCTTCATCGCCTGTGCATCCCAA
GGCATCCACTAAATGCCCTTAAGTCACTTGATTATTCTCATTGCTAATGC
CCAT

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10471:2846..2999+

>mRNA_Ecto-sp9_F_contig10471.448.1 ID=mRNA_Ecto-sp9_F_contig10471.448.1|Name=mRNA_Ecto-sp9_F_contig10471.448.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:2846..2999+ (Ectocarpus species9 EcSCA_722f female)
GGTAGGTTTCCCCATTCGGATATCATCGGATCAAAGCTTATTCGCAGCTC
CCCGACGCTTTTCGCAGCGTATCACGTCCTTCATCGCCTGTGCATCCCAA
GGCATCCACTAAATGCCCTTAAGTCACTTGATTATTCTCATTGCTAAGGT
AGGTTTCCCCATTCGGATATCATCGGATCAAAGCTTATTCGCAGCTCCCC
GACGCTTTTCGCAGCGTATCACGTCCTTCATCGCCTGTGCATCCCAAGGC
ATCCACTAAATGCCCTTAAGTCACTTGATTATTCTCATTGCTAA