mRNA_Ecto-sp9_F_contig10471.447.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10471.447.1
Unique NamemRNA_Ecto-sp9_F_contig10471.447.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL)

HSP 1 Score: 144 bits (363), Expect = 4.440e-42
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPE-----------VTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYGLYG 264
            T ++   F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP            VTLLPKLRVQFAEFLQHSSLKRL ILYLTTCVG GYGLYG
Sbjct:   69 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFGYGLYG 167          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 133 bits (334), Expect = 1.470e-35
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPE-----------VTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLG 249
            T ++   F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP            VTLLPKLRVQFAEFLQHSSLKRL ILYLTTCVG G
Sbjct:  153 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFG 246          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA)

HSP 1 Score: 105 bits (262), Expect = 1.140e-27
Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-----------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLG 249
            T ++   FNSELA LLLTF+HRAGVRPYTSSCDFAEPCVF KQS PP +            LL  LR  FAEFL+  SLKRL ILY +TCVG G
Sbjct:   14 TAAVYRGFNSELAPLLLTFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPRPLLAQKPGLLLANLRRYFAEFLKCGSLKRLGILYQSTCVGFG 107          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE2_PARPM)

HSP 1 Score: 100 bits (248), Expect = 1.790e-25
Identity = 54/80 (67.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   53 PSSTGQASDPIRRLATSQSPVFLINSRYPL-----------RSRFFRSYACNLPSSFNIVLSSALVFST*PPVSVWGTVY 259
            PS TGQASDPIRRLATSQ PVFL+NSR+PL           R+ F RSY   LPSSFN +LSSALV+ST PPVSVWGTV+
Sbjct:    1 PSGTGQASDPIRRLATSQGPVFLVNSRHPLVCAPSPWLPKTRAPFSRSYGGILPSSFNTILSSALVYSTSPPVSVWGTVH 80          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.410e-22
Identity = 56/95 (58.95%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP-------EVTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYGLYG 264
            T ++   FNS LA LLLTFQHRAGV PYTSS D AE CVF KQS  P         +L PKLR QFAEFL + S   L IL+L+TCVGL YG  G
Sbjct:   30 TAAVYWGFNSMLAHLLLTFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHCGSISGASLFPKLRDQFAEFLNYPSPVGLRILFLSTCVGLRYGRLG 124          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBR0_9CILI)

HSP 1 Score: 92.8 bits (229), Expect = 1.690e-22
Identity = 52/84 (61.90%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-----------------LLPKLRVQFAEFLQHSS 201
            T ++   FNSELA LLLTFQHRAGVRPYTSSCDFAEPCVF KQSL P +                   LPKLR QFAEFL HSS
Sbjct:   36 TAAVYWGFNSELAPLLLTFQHRAGVRPYTSSCDFAEPCVFSKQSLSPSLCDHPTPTNRKSRRPKVAPHLPKLRGQFAEFLNHSS 119          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.430e-18
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 TESMXXXFNSELALLL---LTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
            T ++    +S+L L L   LTFQHRAGV PYTSS D AE CVF KQSL P +        LLPKLR  FAEFL ++SL  L IL  +TCVGL YG
Sbjct:   61 TAAVYWGLSSKLRLRLPFPLTFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLCGHLSVAPLLPKLRGYFAEFLNNASLAHLRILSSSTCVGLRYG 155          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 88.2 bits (217), Expect = 1.880e-18
Identity = 51/87 (58.62%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVTLLPKLRV----------QFAEFLQHSSLKRLSILYLT 231
            T ++   F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP +     LR                LQHSSLKRL  L L+
Sbjct:  458 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKYLRTWGHASSEVTRAICRVLQHSSLKRLGTLGLS 544          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZLA3_TRITR)

HSP 1 Score: 85.5 bits (210), Expect = 2.380e-18
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
            T ++   F+S LA LLLTFQHRAGV  YTSS D A+ CVF KQ L P +        LLPKLR QFAEFL + S   L I +L TCVGL YG
Sbjct:  122 TAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGAPLLPKLRGQFAEFLNNPSPVGLRIFFLPTCVGLRYG 213          
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=10 Tax=Eubacteriales TaxID=186802 RepID=C7H9G6_FAEPA)

HSP 1 Score: 85.5 bits (210), Expect = 4.030e-18
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
            T ++   F+S LA LLLTFQHRAGV  YTSS D A+ CVF KQ L P +        LLPKLR QFAEFL + S   L I +L TCVGL YG
Sbjct:  157 TAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGAPLLPKLRGQFAEFLNNPSPVGLRIFFLPTCVGLRYG 248          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.440e-4276.77protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A... [more]
Uncharacterized1.470e-3575.53protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A... [more]
Uncharacterized1.140e-2762.77protein (Fragment) n=1 Tax=Schizaphis graminum Tax... [more]
Uncharacterized1.790e-2567.50protein (Fragment) n=3 Tax=Pararhodospirillum phot... [more]
Uncharacterized1.410e-2258.95protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID... [more]
Hypothetical1.690e-2261.90protein (Fragment) n=1 Tax=Anophryoides haemophila... [more]
Uncharacterized1.430e-1855.79protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA... [more]
Uncharacterized1.880e-1858.62protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A... [more]
Uncharacterized2.380e-1856.52protein n=1 Tax=Trichuris trichiura TaxID=36087 Re... [more]
Uncharacterized4.030e-1856.52protein (Fragment) n=10 Tax=Eubacteriales TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10471contigEcto-sp9_F_contig10471:1156..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.7
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog428125.CLOLEP_01448
EggNOG free text desc.non supervised orthologous group
EggNOG OGs1V6N4@1239,24K1H@186801,2B9ZZ@1,323DM@2,3WJW5@541000
COG Functional cat.S
Best tax levelRuminococcaceae
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10471.447.1prot_Ecto-sp9_F_contig10471.447.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10471 1165..1452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928257.9921947-UTR-Ecto-sp9_F_contig10471:1155..11641622928257.9921947-UTR-Ecto-sp9_F_contig10471:1155..1164Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 1156..1164 +
1692277812.070204-UTR-Ecto-sp9_F_contig10471:1155..11641692277812.070204-UTR-Ecto-sp9_F_contig10471:1155..1164Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 1156..1164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928258.025155-CDS-Ecto-sp9_F_contig10471:1164..12971622928258.025155-CDS-Ecto-sp9_F_contig10471:1164..1297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 1165..1297 +
1692277812.0795474-CDS-Ecto-sp9_F_contig10471:1164..12971692277812.0795474-CDS-Ecto-sp9_F_contig10471:1164..1297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 1165..1297 +
1622928258.047207-CDS-Ecto-sp9_F_contig10471:1330..14521622928258.047207-CDS-Ecto-sp9_F_contig10471:1330..1452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 1331..1452 +
1692277812.0896354-CDS-Ecto-sp9_F_contig10471:1330..14521692277812.0896354-CDS-Ecto-sp9_F_contig10471:1330..1452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 1331..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10471.447.1

>prot_Ecto-sp9_F_contig10471.447.1 ID=prot_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
MXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVTLLP
KLRVQFAEFLQHSSLKRLSILYLTTCVGLGYGLYG
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mRNA from alignment at Ecto-sp9_F_contig10471:1156..1452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10471.447.1 ID=mRNA_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:1156..1452+ (Ectocarpus species9 EcSCA_722f female)
ACTGAGTCTATGTNNNNNNNNTTCAATTCAGAGCTTGCACTCCTCCTCTT AACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACT TCGCAGAGCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGC CACCACTATCTACTTGCGTAAATAGAGGTCACGCTTCTTCCGAAGTTACG CGTGCAATTTGCCGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTAGTA TTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGGTCTATATGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10471:1156..1452+

>mRNA_Ecto-sp9_F_contig10471.447.1 ID=mRNA_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:1156..1452+ (Ectocarpus species9 EcSCA_722f female)
ATGTNNNNNNNNTTCAATTCAGAGCTTGCACTCCTCCTCTTAACCTTCCA
GCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAGAGC
CCTGTGTTTTTGATAAACAGTCGCTACCCCCTGATGTNNNNNNNNTTCAA
TTCAGAGCTTGCACTCCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA
GACCCTATACGTCGTCTTGCGACTTCGCAGAGCCCTGTGTTTTTGATAAA
CAGTCGCTACCCCCTGAGGTCACGCTTCTTCCGAAGTTACGCGTGCAATT
TGCCGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTAGTATTCTCTACC
TGACCACCTGTGTCGGTTTGGGGTACGGTCTATATGGTAGGTCACGCTTC
TTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTCAACATAGTTCTCTC
AAGCGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGG
TCTATATGGT
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