mRNA_Ecto-sp9_F_contig10466.441.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10466.441.1
Unique NamemRNA_Ecto-sp9_F_contig10466.441.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIB2_ECTSI)

HSP 1 Score: 595 bits (1533), Expect = 3.040e-206
Identity = 317/324 (97.84%), Postives = 320/324 (98.77%), Query Frame = 3
Query:    3 GPNELPLFLEGDEELTALAEESAGAAQGLATQLSAVRRSHMSCWGIANSKSGTSGSGSGDAGKAAMVTNDDDEQKVGSDNGKDKGEGPTTISEGNAEGEEAVAATEHGSCMGWWSGVLGRWHERTQLVDPGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFGGAGRTQQPDTKYK 974
            GPNELPLFLEGDE+LTALAEESAGAAQGLATQLSAVRRSHMSCWGIAN KSG SGSGSGDAGKAAMVTNDDDEQKVG+DNGKDKGEGPTTISEGNAEGEEAVAATEHGSCMGWWS VLGRWHERTQLVDPGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEV+DDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMF QEYEAPPMEPSELFASLFGGAGRTQQPDTKYK
Sbjct:  285 GPNELPLFLEGDEQLTALAEESAGAAQGLATQLSAVRRSHMSCWGIANIKSGDSGSGSGDAGKAAMVTNDDDEQKVGNDNGKDKGEGPTTISEGNAEGEEAVAATEHGSCMGWWSDVLGRWHERTQLVDPGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVVDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFPQEYEAPPMEPSELFASLFGGAGRTQQPDTKYK 608          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Apoptosis-antagonizing (transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.070e-36
Identity = 120/319 (37.62%), Postives = 160/319 (50.16%), Query Frame = 3
Query:    6 PNELPLFLEGDEELTALAEESAGAAQGLATQLSAVRRSHMSCWGIANSKSGTSGSGSGDAGKAAMVTNDDDEQKVGSDNGKDKGEGPTT-ISEGNAEGEEAVAATEHGSCMGWWSGVLGRWHERTQLVDPGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESET-SEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRK-------KSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            P  LP +   +  L  LA  +A  A  LA  LSA+R+ HM   GIA                            VG  +G+++  G       G+   E+A+A  ++  C  WW   + RW  RT  + P LQ+KFK VNQG WAQ+ AS+AD+ERA R+ F   ++T +   GR +A   +           XXXXXXXXXX   D+G+ +       +  A+P+D EVLDDR LY H LKEF++  G  G                     + VDR+ASKGRK++Y  H K+QNF F QEY  PPM+  ELFASLFG
Sbjct:  162 PRALPAYRAAEPALAPLAAAAAARADALAAGLSALRKGHMRQAGIA----------------------------VGGGDGQEEAGGXVPEXXXGDTIWEDALA--DYRRCRAWWERCVERWQRRTAALSPALQRKFKAVNQGVWAQVEASMADKERARRKLFALRADTDARCFGRFIAPPSEEXXX-----XXXXXXXXXXXXXXIDDGERNAAALRASRWRADPIDCEVLDDRELYHHQLKEFVEG-GEGGXXXXXXXXXXXXXXXXXXXXXRKVDRRASKGRKLRYEVHAKLQNFAFPQEYGPPPMDADELFASLFG 444          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRT7_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-17
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  342 WSGVLGRWHERTQLVDPGLQ-KKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFGGAGRT 950
            ++ +L  +  +T L   G Q KKFK VNQ   +Q+ + LAD +R  R++                  +DA  G                   DD GD D +  +            + DD + YQ LLKEF+++ G +G         RK +KK V+RKASKGR+++Y  HPK++NFMF   Y  P M+  ELF S+FG    T
Sbjct:  290 YNDILNTYTRKTNLAGAGSQAKKFKAVNQDILSQVESVLADVQRVKRKAH-------------APLEMDAENG------------GMTTAEEDDSGDSDRLDEL------------MYDDSDFYQQLLKEFLESGGGSGQDTLLQRTHRK-KKKIVNRKASKGRQLRYTVHPKLENFMFPDPYPKPEMDVDELFRSVFGQVSST 455          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G086_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.670e-17
Identity = 65/201 (32.34%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  342 WSGVLGRWHERTQLVD--PGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVR-RKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            ++ +L    ++T L++  P  +KKFK VNQ   +Q+ A +AD  R  R++ + + E +   G +L                                                LD  + DD   YQHLLKEF+D +  AG   +A+  R  + ++K V+RKASKGR+I+YV HPK++NFMF + +  P M+  ELF SLFG
Sbjct:  238 YNSILSTALQKTTLLNGKPMKEKKFKAVNQDILSQVDAVVADPLRVKRKAHIPKEEATSKEGDELE-----------------------------------------------LDELMYDDAEFYQHLLKEFVDQNAEAGGWQAALRQRINRKKRKLVNRKASKGRQIRYVVHPKLENFMFPEPHAKPSMDIDELFKSLFG 391          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEA2_BRELC)

HSP 1 Score: 91.7 bits (226), Expect = 3.570e-16
Identity = 63/201 (31.34%), Postives = 97/201 (48.26%), Query Frame = 3
Query:  342 WSGVLGRWHERTQLVDPGLQ---KKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            +S +L  +  +T L+  G     KKFK VNQ   +Q+ + L D +R  R++          L  ++A  ++                                         + LD  + DD + YQ LLKEF+++SG+ G+G  A+    + +KK V+RKASKGR+++Y  HPK++NFMF + Y  P M+  ELF SLFG
Sbjct:  277 YSNILNTYTRKTDLIAGGKNRQAKKFKAVNQDILSQVESVLLDPQRVKRKAHAP-------LENEVAVDIE-----------------------------------------DQLDELMYDDSDFYQQLLKEFIESSGS-GTGLDAIRRTHRKKKKVVNRKASKGRQLRYTVHPKLENFMFPEPYPIPDMDLDELFRSLFG 428          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTD8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.980e-15
Identity = 71/217 (32.72%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  300 EAVAATEHGSCMGWWSGVLGRWHERTQLVDPGLQ---KKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKS--VDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            + + A  H + +  ++ +L  +  +T L   G     KKFK VNQ   AQ+ + L D +R  R               K    LD A+                   S +E  ED++  +            + DD + YQ LLKEF+++ G   +G  A+ VRR  RKK   V+RKASKGR+++Y  HPK++NFMF + Y  P M+  ELF SLFG
Sbjct:  279 QEITAANH-ALLPQYNDILNTYTRKTDLAAGGKNSQAKKFKAVNQDILAQVESVLVDPQRVKR---------------KAHAPLDVAE------------------TSAEESAEDLLDEL------------MYDDSDFYQQLLKEFIESGG---AGQDAM-VRRTHRKKKKLVNRKASKGRQLRYTVHPKLENFMFPEPYPKPEMDVDELFRSLFG 445          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2H0_HYAAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.520e-15
Identity = 71/213 (33.33%), Postives = 98/213 (46.01%), Query Frame = 3
Query:  312 ATEHGSCMGWWSGVLGRWHERTQLVDPGLQ---KKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKS--VDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            AT   + +  ++ +L  +  +T L         KKFK VNQ   AQ+ + L D  R  R++                  LD  + D   G                              G E LD  + DD + YQ LLKEF++ SG  GSG     V+R  RKK+  V+RKASKGR+++Y  HPK++NFMF + Y  P M+ +ELF SLFG
Sbjct:  316 ATSSSAMLPQYNDILSTYTRKTDLAAGSKNTQAKKFKAVNQDILAQVESVLVDPRRVKRKAHAL---------------LDVPEADVTEG------------------------------GEEQLDELMYDDSDFYQQLLKEFIE-SGGGGSGQ----VKRTHRKKNRIVNRKASKGRQLRYTVHPKLENFMFPEPYPRPEMDVTELFRSLFG 478          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZZ6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.230e-15
Identity = 66/210 (31.43%), Postives = 100/210 (47.62%), Query Frame = 3
Query:  315 TEHGSCMGWWSGVLGRWHERTQLVDPGLQ---KKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            T + + +  ++ +L  +  +T L         KKFK VNQ   AQ+ + L D +R               + RK    +DA + D  AG                EG ED++  +            + DD + YQ LLKEF+++ G      + V    + +KK+V+RKASKGR+++Y  HPK++NFMF + Y  P M+  ELF SLFG
Sbjct:  269 TSNRALLPQYNEILNTYTRKTDLAAGSKNNQAKKFKAVNQDILAQVESVLVDPQR---------------IKRKAHALVDAPEAD--AG----------------EGAEDMLDEL------------MYDDSDFYQQLLKEFIESGGXXXGQDAMVRRTHRKKKKAVNRKASKGRQLRYTVHPKLENFMFPEPYPKPEMDVDELFRSLFG 433          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Uncharacterized (protein AlNc14C5G775 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0Z5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.620e-14
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  657 KDGAE-PLDLEVLDDRNLYQHLLKEFMDASGTAGSGYSAVPVR-RKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEPSELFASLFG 935
            K+G E  LD  + DD   YQHLLKE++D +  AG   +A+ +R  + ++K V+RKASKGR+I+YV HPK++NFMF + +  P M+  ELF SLFG
Sbjct:  292 KEGNELELDELMYDDAEFYQHLLKEYIDQNTEAGGWQAALRLRINRKKRKLVNRKASKGRQIRYVVHPKLENFMFPEPHANPSMDIDELFRSLFG 386          
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Match: Apoptosis-antagonizing (transcription factor n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YUR8_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 1.630e-14
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 3
Query:  351 VLGRWHERTQLV-DPGLQKKFKVVNQGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAGSAXXXXXXXXXXRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLLKEFM-------DASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFMFSQEYEAPPMEP-SELFASLFGGAGRTQQ 956
             + +WH + Q+     L K+FK +NQG   QI   LAD+ER  +R+ +  ++  + LG+K A    AA+                        DE++      KD  +  D EV DD + YQ LL+E +       D     G+ ++A+  + K  KK VD KASKGRK++Y  H K+Q+FM          E   EL+ASLFG   RT+Q
Sbjct:   29 TMEKWHNKVQVAAGVPLNKRFKAINQGIHEQIGQVLADKERLVKRTQLKRNDY-QILGKKEA--APAAE------------------------DENIDAE---KDPLKDYDGEVFDDTDFYQQLLRELIESRMVDTDDPMAIGARWAALKQQTKKNKKKVDTKASKGRKLRYHVHDKLQSFMVPIPAGTWHQEMVDELYASLFGQQQRTEQ 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10466.441.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.040e-20697.84protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIB2... [more]
Apoptosis-antagonizing1.070e-3637.62transcription factor n=1 Tax=Tribonema minus TaxID... [more]
Uncharacterized1.230e-1732.84protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized8.670e-1732.34protein n=1 Tax=Albugo candida TaxID=65357 RepID=A... [more]
Uncharacterized3.570e-1631.34protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized2.980e-1532.72protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized3.520e-1533.33protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized4.230e-1531.43protein n=4 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized1.620e-1449.47protein AlNc14C5G775 n=1 Tax=Albugo laibachii Nc14... [more]
Apoptosis-antagonizing1.630e-1433.18transcription factor n=1 Tax=Syncephalis pseudoplu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10466contigEcto-sp9_F_contig10466:390..4229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score526.6
Seed ortholog evalue7.4e-147
Seed eggNOG ortholog2880.D7FIB2
Preferred nameAATF
KEGG koko:K14782,ko:K22074
GOsGO:0000003,GO:0000462,GO:0003006,GO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007155,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008092,GO:0008150,GO:0008152,GO:0009790,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010559,GO:0010561,GO:0010604,GO:0010605,GO:0010628,GO:0010941,GO:0012505,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022610,GO:0022613,GO:0030154,GO:0030275,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032928,GO:0032929,GO:0032991,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0040016,GO:0042254,GO:0042274,GO:0042981,GO:0042984,GO:0042985,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043522,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048156,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051301,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090322,GO:0140110,GO:1901360,GO:1902680,GO:1903018,GO:1903019,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000377,GO:2000378,GO:2001141
EggNOG free text desc.negative regulation of superoxide anion generation
EggNOG OGsKOG2773@1,KOG2773@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAATF leucine zipper transcription factor
Ec32 orthologEc-11_001240.1
Exons4
Model size1561
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10466.441.1prot_Ecto-sp9_F_contig10466.441.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10466 512..3645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928256.837635-UTR-Ecto-sp9_F_contig10466:389..5111622928256.837635-UTR-Ecto-sp9_F_contig10466:389..511Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10466 390..511 +
1692277811.4878561-UTR-Ecto-sp9_F_contig10466:389..5111692277811.4878561-UTR-Ecto-sp9_F_contig10466:389..511Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10466 390..511 +
1622928256.8961527-UTR-Ecto-sp9_F_contig10466:3645..42291622928256.8961527-UTR-Ecto-sp9_F_contig10466:3645..4229Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10466 3646..4229 +
1692277811.5410352-UTR-Ecto-sp9_F_contig10466:3645..42291692277811.5410352-UTR-Ecto-sp9_F_contig10466:3645..4229Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10466 3646..4229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928256.8528483-CDS-Ecto-sp9_F_contig10466:511..8921622928256.8528483-CDS-Ecto-sp9_F_contig10466:511..892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 512..892 +
1692277811.5076861-CDS-Ecto-sp9_F_contig10466:511..8921692277811.5076861-CDS-Ecto-sp9_F_contig10466:511..892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 512..892 +
1622928256.8625784-CDS-Ecto-sp9_F_contig10466:1635..18571622928256.8625784-CDS-Ecto-sp9_F_contig10466:1635..1857Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 1636..1857 +
1692277811.515407-CDS-Ecto-sp9_F_contig10466:1635..18571692277811.515407-CDS-Ecto-sp9_F_contig10466:1635..1857Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 1636..1857 +
1622928256.8728642-CDS-Ecto-sp9_F_contig10466:3066..32221622928256.8728642-CDS-Ecto-sp9_F_contig10466:3066..3222Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 3067..3222 +
1692277811.5239375-CDS-Ecto-sp9_F_contig10466:3066..32221692277811.5239375-CDS-Ecto-sp9_F_contig10466:3066..3222Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 3067..3222 +
1622928256.8840694-CDS-Ecto-sp9_F_contig10466:3549..36451622928256.8840694-CDS-Ecto-sp9_F_contig10466:3549..3645Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 3550..3645 +
1692277811.5328238-CDS-Ecto-sp9_F_contig10466:3549..36451692277811.5328238-CDS-Ecto-sp9_F_contig10466:3549..3645Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10466 3550..3645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10466.441.1

>prot_Ecto-sp9_F_contig10466.441.1 ID=prot_Ecto-sp9_F_contig10466.441.1|Name=mRNA_Ecto-sp9_F_contig10466.441.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=285bp
MSCWGIANSKSGTSGSGSGDAGKAAMVTNDDDEQKVGSDNGKDKGEGPTT
ISEGNAEGEEAVAATEHGSCMGWWSGVLGRWHERTQLVDPGLQKKFKVVN
QGPWAQITASLADRERANRRSFMTESETSEFLGRKLAKHLDAAKGDGDAG
SAAAAAAAAAGGRSDDEGDEDVVGRVRRKDGAEPLDLEVLDDRNLYQHLL
KEFMDASGTAGSGYSAVPVRRKSRKKSVDRKASKGRKIKYVTHPKMQNFM
FSQEYEAPPMEPSELFASLFGGAGRTQQPDTKYK*
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mRNA from alignment at Ecto-sp9_F_contig10466:390..4229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10466.441.1 ID=mRNA_Ecto-sp9_F_contig10466.441.1|Name=mRNA_Ecto-sp9_F_contig10466.441.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3840bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10466:390..4229+ (Ectocarpus species9 EcSCA_722f female)
CAGGACCGAACGAGCTCCCTCTGTTCTTGGAGGGTGACGAGGAGCTGACA GCTCTCGCCGAGGAAAGCGCAGGCGCCGCGCAAGGATTGGCCACCCAGTT GTCAGCCGTGCGGCGATCGCACATGTCGTGCTGGGGAATCGCCAACAGCA AAAGCGGCACAAGCGGCAGCGGTAGTGGTGATGCCGGCAAGGCAGCGATG GTCACCAATGACGACGATGAGCAGAAGGTAGGCAGCGATAACGGCAAGGA CAAAGGCGAGGGCCCGACCACCATCTCCGAGGGTAATGCCGAGGGCGAGG AGGCAGTGGCGGCGACGGAGCACGGGAGTTGCATGGGGTGGTGGAGCGGC GTGCTGGGGCGGTGGCACGAGAGGACGCAGCTCGTCGACCCTGGCCTGCA GAAGAAGTTTAAGGTGGTGAACCAGGGTCCGTGGGCGCAGATCACGGCGA GCTTGGCCGACAGAGAACGGGCGAACCGAAGGTCCTTCATGACGGAGTCG GAGGTGCGTGGGATAGTTTAGGTAGGGTTGGGGTGTGCTGGAGGTGAATA TTGTTGGGTTCCACTTTTTTTTGGTGTGTGTTGTCCTGGGAGACATTTGT CCGGTGCATGGATTGTGTTTTTTTGGTCCCCATGGACCTACGAAGAAGGT GGTGGTTGGGGAGTGGAGTTTTGTGACGTTGAAGGCATTGTTGTGTTTGT GCTCTACCGTTAACGAACCGCTCGTGTATTGCCTTGGCATCGGGCGCCTT CCCTGCAGGGTCGAGTCTTTACTTTTGTGGTATACTACAGTGGTCTGCGG TTAACACACGCCAGGTGATTGTACGGGTTCGGTACGACGTATCCCTTCTT ACACCCGGGCGTCCGTCATGGCGAGCTGTCAACGGTGCCGGAGTTGGAAG CAACAGTTGCAGTTCGTTGAATGTTGGGTTTTGGCACTTGGTAAATTCAT GATGAGAGCCCTTTCGTCGAGCGTATGCGAAACTGTGGATTTTTCAATCC CTCGGGTTGTACGTCGCCGAACATGTGGACAGCCTAGTGTTCGTTTACCT TCTGATGAGCTAGCTGCTAGATCTGTCTTCATGGTCCTGACAACAACAAA AAAAACACTACTGCTATACGGTGTACAAATACGTTGTTTTTGTCGCGGCT TCTGCACACAACGATTTCGCTCCCCCCAACCCCCGTGTCAATTCTCCTGC GGCTCCGCCCACCGTATCGTGACATATACCTCATGATGTGACGCAGACAT CGGAGTTTCTTGGACGAAAACTCGCCAAGCATCTCGACGCGGCCAAAGGC GACGGCGACGCCGGCTCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGG GAGGAGTGACGATGAGGGCGACGAAGACGTAGTCGGGCGTGTGAGACGAA AAGATGGAGCCGAGCCGCTCGACCTGGAGGTTCTTGACGACCGCAACCTG TACCAGCACCTACTCAAGGTACACAACTCGATGCTGGTTGCATGTCTACT CAAGGTGTATGTCGAGTGTTGGTGTTGCGTTTCTGCTCAAGATAGGAGTA TCTAGCAGTCAAGTGTTGCTGTCTACTCAAGGTATATAGCAGTCGAGTTT TGGTGTTGCATGTCTTCGCAAGGTACATATCACTCGACTGTTTGTGTTGC AAGTTGGTCGCGCCTCGGACTTGGTTCAATTGCTTTACGTCTTGATGATG CTGCTGTCGACTGAGCGGGTCGATTCCAACTTGCGGTGTCGGTCTTGGGG GTTATGCCATACGTTGCAGTTCACGAAACAAGCCAGACTGATTTGCCAAG GGCTGTTGACGTGGATCGATCTGGTGTGCACATCAAGCACTCGTTGTCTT AGGCCCATGCTGGACCGGGGAACGGACAACCTCCGAAAACTTCCCACGTT CTGTTCCGCGATGTCCCATATCGGATATCGGACGGTGTGTTGCAAAAGTG CTTCGCCAGAACGCTCCTTGTCATGGCTGCTGCGGCAGTTAAACAACCAA AACAGACCATTCGGAACACCGTGTCTTACGCAATTTTTTTGATCGGCGAG GGTGTGTGTGCGTGCGTGTATTTTGCCCTGAGGATTACTAAGCCTCATCC CCGGGTGTTCCACGTTACTCATCGACCGGGAATGTCCGTCATATTCCCCG AATCTCCGGGGATGAAAACAGTACCAGTATACGTACCCCGGGGGGACACA AAGCCCCCATCCTGGACCTCCATTCAAGCATGTGTAGGAGAGACAACTTC AGGAGAGAGGCGCGTTCTGCAATGTGTGTACCTTGTAGAAGTAGAAGTAC AAGATTAAGATTAAGACTAGGATTAAGATTTCAACCCCAGGGGAGGTGGA ACGGGGTAGGTGCGGTATTTGCATCGGGAATGCCCCTTGAAACATCTCGG AGGGGGGGGGACTACCAATAGCACTCTAGAGCTTCGAAGCCTGACAGCAG CTTCGCGCTCTCTCTTGTACGCTTAGACTATGCCTAGTGTTGCAGTCAGA GTTGCAGTAGCCTTCCTTGCAAACCTGAACTCTGCTGCCTTGCACTGCGT TGGACGAAGGTTTTTCGTGCACCGTTCGCTCACGAAGCATATCGCCAGCA CCATGTGCCACTCTAAAACACACGCACTTGCCATGTACTGGTACATGGAT GCGTGTTCCCTCGTTTTGGTTTTTCAGGAGTTTATGGACGCCAGCGGGAC CGCCGGCAGCGGTTACTCCGCGGTTCCCGTCCGACGGAAATCGCGAAAGA AGAGCGTGGACCGGAAGGCGTCCAAAGGGCGCAAGATCAAGTACGTCACG CACCCCAAGATGCAGAACTTCATGTTCTCGCAGGTGAGCTAGGGTGGGTA CTGACGGCGTCTGTATTTGCGGTGCTCTTGATTGCTCTGCTGGAAACGTT CGGAGTTACGCGCATCAAGAGGGGTCGATGACCGGTGAGGTAGATTCTGC CTGCCGGGAGGATCCCTGAACTGCTCTACGAGTAGGACCCACTTCCGGCC TTGCGGTAGTTTGTGTATCCGTATAGGGCTGTGGCGATCCGCACAGCTGC AGTGTAGTCGTGCGCGGGCGTCTTGCTTGCTTCAACTCGCTCTTTTTTCT GCTCCATTACGCCCAATGGTTGCCGCTTTTTCGTGCGTCGATGATGCGTC TCTGTGACAGGAGTATGAGGCACCCCCGATGGAACCTTCGGAGCTGTTCG CTTCCCTGTTTGGCGGGGCTGGCAGAACTCAACAGCCCGATACAAAGTAC AAGTAGTTGGTTCCAAGCTCCAGCGTATCATTTCCATGAGGACAGGGTGC GGGGCATGACGTTGTAGCGAACAATATATAGGGAGGGGTGTCTATGCCCA GAACAATCGATGTTGATCGCCTTTGGATCTTGGGGATTGTTTGCCTTCCA GCTTACATTATTTGTCGAGTGCTTGATTTTCGTCCCGTGATACGTTTCTC CAGCTTTAGTCGCAAGTTCGAACGGATTCATCCACTTCAACTAGTGTGTC AGGGGGGATGGCACCCTAGTGTGAAGTGTGGATGGGTTGGGTGATCCTTT CAGCCAATCATGTCGCGACGATGGGCGGGACGCCGCTAAAGGTTATGGTT CGATGACGTGATAAGACGATGTTCTGTAGTCCATCCGTGACTAATTCCAA GCCCAATTCTTGTTGTTGGATTTTGTATATGCCTCTGCGCTGGCATTTAC TCACCGGGTGGAGCAACACCACAAGTCATAGCATAGCTCTTGCTAAACAT GGGGGCGTCCTCTCAGTCGTGTGACGAAAACTACAAGGGACCCCGCAAAA AATATCGCTTCGACCCATGTACGTACGCCTCAAGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10466:390..4229+

>mRNA_Ecto-sp9_F_contig10466.441.1 ID=mRNA_Ecto-sp9_F_contig10466.441.1|Name=mRNA_Ecto-sp9_F_contig10466.441.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1710bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10466:390..4229+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTGCTGGGGAATCGCCAACAGCAAAAGCGGCACAAGCGGCAGCGG
TAGTGGTGATGCCGGCAAGGCAGCGATGGTCACCAATGACGACGATGAGC
AGAAGGTAGGCAGCGATAACGGCAAGGACAAAGGCGAGGGCCCGACCACC
ATCTCCGAGGGTAATGCCGAGGGCGAGGAGGCAGTGGCGGCGACGGAGCA
CGGGAGTTGCATGGGGTGGTGGAGCGGCGTGCTGGGGCGGTGGCACGAGA
GGACGCAGCTCGTCGACCCTGGCCTGCAGAAGAAGTTTAAGGTGGTGAAC
CAGGGTCCGTGGGCGCAGATCACGGCGAGCTTGGCCGACAGAGAACGGGC
GAACCGAAGGTCCTTCATGACGGAGTCGGAGATGTCGTGCTGGGGAATCG
CCAACAGCAAAAGCGGCACAAGCGGCAGCGGTAGTGGTGATGCCGGCAAG
GCAGCGATGGTCACCAATGACGACGATGAGCAGAAGGTAGGCAGCGATAA
CGGCAAGGACAAAGGCGAGGGCCCGACCACCATCTCCGAGGGTAATGCCG
AGGGCGAGGAGGCAGTGGCGGCGACGGAGCACGGGAGTTGCATGGGGTGG
TGGAGCGGCGTGCTGGGGCGGTGGCACGAGAGGACGCAGCTCGTCGACCC
TGGCCTGCAGAAGAAGTTTAAGGTGGTGAACCAGGGTCCGTGGGCGCAGA
TCACGGCGAGCTTGGCCGACAGAGAACGGGCGAACCGAAGGTCCTTCATG
ACGGAGTCGGAGACATCGGAGTTTCTTGGACGAAAACTCGCCAAGCATCT
CGACGCGGCCAAAGGCGACGGCGACGCCGGCTCGGCAGCGGCGGCGGCGG
CGGCGGCGGCGGGGGGGAGGAGTGACGATGAGGGCGACGAAGACGTAGTC
GGGCGTGTGAGACGAAAAGATGGAGCCGAGCCGCTCGACCTGGAGGTTCT
TGACGACCGCAACCTGTACCAGCACCTACTCAAGACATCGGAGTTTCTTG
GACGAAAACTCGCCAAGCATCTCGACGCGGCCAAAGGCGACGGCGACGCC
GGCTCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGAGGAGTGACGA
TGAGGGCGACGAAGACGTAGTCGGGCGTGTGAGACGAAAAGATGGAGCCG
AGCCGCTCGACCTGGAGGTTCTTGACGACCGCAACCTGTACCAGCACCTA
CTCAAGGAGTTTATGGACGCCAGCGGGACCGCCGGCAGCGGTTACTCCGC
GGTTCCCGTCCGACGGAAATCGCGAAAGAAGAGCGTGGACCGGAAGGCGT
CCAAAGGGCGCAAGATCAAGTACGTCACGCACCCCAAGATGCAGAACTTC
ATGTTCTCGCAGGAGTTTATGGACGCCAGCGGGACCGCCGGCAGCGGTTA
CTCCGCGGTTCCCGTCCGACGGAAATCGCGAAAGAAGAGCGTGGACCGGA
AGGCGTCCAAAGGGCGCAAGATCAAGTACGTCACGCACCCCAAGATGCAG
AACTTCATGTTCTCGCAGGAGTATGAGGCACCCCCGATGGAACCTTCGGA
GCTGTTCGCTTCCCTGTTTGGCGGGGCTGGCAGAACTCAACAGCCCGATA
CAAAGTACAAGTAGGAGTATGAGGCACCCCCGATGGAACCTTCGGAGCTG
TTCGCTTCCCTGTTTGGCGGGGCTGGCAGAACTCAACAGCCCGATACAAA
GTACAAGTAG
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