mRNA_Ecto-sp9_F_contig10457.436.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10457.436.1
Unique NamemRNA_Ecto-sp9_F_contig10457.436.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN1_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.470e-47
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 246
            ASCGDDSNVRVSDLRSSSSFGVSQRLDG+HGGRACHTVRWHPLD NLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR
Sbjct:  582 ASCGDDSNVRVSDLRSSSSFGVSQRLDGVHGGRACHTVRWHPLDDNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 663
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U5_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 8.550e-45
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 246
            ASCGDDSNVRVSDLRSSSS GVSQRLDG+HGGRACHTVRWHPLD N LLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR
Sbjct:  705 ASCGDDSNVRVSDLRSSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 786
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: WD40-repeat-containing (domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.150e-18
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 246
            ASCGDD++VRV D+R++  + ++  L+ +H   A HTVRWHP D +LLL+AGLD+ V L+DLR+  A    +RGH P+AL R
Sbjct:  438 ASCGDDASVRVCDIRAARGYYIAVGLEDVHSACA-HTVRWHPTDEHLLLTAGLDTVVKLFDLRKPNAAAVEYRGHVPFALPR 518
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLP2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.250e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  106 HTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALA 243
            H+V WHP   +LLL+AG DS V L+DLR L APL  F  H P ALA
Sbjct:   29 HSVEWHPCSKDLLLTAGFDSVVRLWDLRHLGAPLRCFDDHVPKALA 74
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E491_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 8.860e-8
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGH 225
            AS G+D ++ +SDLR+S   G  Q +       A + + + P DG LLL+AG +  +++YDLR +AAPL   RGH
Sbjct:   10 ASAGNDRDIHLSDLRASGGGGAMQTVTDALAS-AINVLEFSP-DGTLLLAAGFEDVIHVYDLRHMAAPLASLRGH 82
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GSK6_9ALVE)

HSP 1 Score: 53.1 bits (126), Expect = 3.150e-6
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   88 HGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGH 225
            H G+AC+++ + P    L+ + G D  VNL+DLR+L+AP+HV  GH
Sbjct:  270 HKGKACNSLAFSPFISTLIATGGEDQVVNLWDLRKLSAPMHVLEGH 315
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G2Y9_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 2.910e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    4 SCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRR--LAAPLHVFRGH 225
            S G+D +VRV+DLR  S   V Q      G    ++  W P DG+L++SAG+D T+ L+D R+   + PLH  +GH
Sbjct:  597 STGNDYSVRVTDLRILSQGSVLQW----EGNSVINSCSWQP-DGSLIMSAGIDHTIKLWDPRKGSNSPPLHTLKGH 667
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BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FDT0_ASPOF)

HSP 1 Score: 48.9 bits (115), Expect = 9.910e-5
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    4 SCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRL-----AAPLHVFRGH 225
            S GDDS + + D R  S  G + +++  H G   H V W+  D NL+L+   DS+V L+D R+L      +PLH+F GH
Sbjct:  282 SVGDDSCLILWDARVGS--GPAIKVEKAHNGDL-HCVDWNRHDENLILTGSADSSVRLFDRRKLISGAVGSPLHIFEGH 357
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized8.470e-4797.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.550e-4595.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WD40-repeat-containing7.150e-1851.22domain protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Hypothetical2.250e-958.70protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical8.860e-841.33protein n=1 Tax=Chloropicon laureae TaxID=464258 R... [more]
Uncharacterized3.150e-645.65protein (Fragment) n=1 Tax=Chromera velia CCMP2878... [more]
Hypothetical2.910e-540.79protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
Uncharacterized9.910e-539.24protein n=2 Tax=Asparagus officinalis TaxID=4686 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10457contigEcto-sp9_F_contig10457:338..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D7G8U5
Preferred nameWDR59
KEGG koko:K03678,ko:K10752,ko:K20409
KEGG Pathwayko03018,ko04150,ko04218,map03018,map04150,map04218
KEGG ModuleM00391
GOsGO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010646,GO:0010647,GO:0016020,GO:0023051,GO:0023056,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032991,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061700,GO:0065007,GO:0071496,GO:0098588,GO:0098805,GO:0098852,GO:1902531,GO:1902533,GO:1990928
EggNOG free text desc.chromatin organization
EggNOG OGsKOG0264@1,KOG0264@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928255.4137826-CDS-Ecto-sp9_F_contig10457:337..5861622928255.4137826-CDS-Ecto-sp9_F_contig10457:337..586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10457 338..586 +
1692277810.9124334-CDS-Ecto-sp9_F_contig10457:337..5861692277810.9124334-CDS-Ecto-sp9_F_contig10457:337..586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10457 338..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10457.436.1prot_Ecto-sp9_F_contig10457.436.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10457 338..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10457.436.1

>prot_Ecto-sp9_F_contig10457.436.1 ID=prot_Ecto-sp9_F_contig10457.436.1|Name=mRNA_Ecto-sp9_F_contig10457.436.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLS
AGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR*
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mRNA from alignment at Ecto-sp9_F_contig10457:338..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10457.436.1 ID=mRNA_Ecto-sp9_F_contig10457.436.1|Name=mRNA_Ecto-sp9_F_contig10457.436.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10457:338..586+ (Ectocarpus species9 EcSCA_722f female)
GCCTCTTGCGGGGACGACTCGAACGTTCGCGTGTCCGACCTGCGGTCCTC
TTCATCCTTCGGAGTCTCCCAACGGCTGGACGGTATTCACGGCGGCCGTG
CCTGCCACACTGTTCGGTGGCACCCTCTCGATGGCAACCTGCTCCTTTCG
GCAGGGCTGGACTCGACGGTCAACCTCTACGACCTGCGGCGCTTGGCTGC
CCCCCTGCACGTGTTCCGAGGACATTGCCCCTACGCCCTTGCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10457:338..586+

>mRNA_Ecto-sp9_F_contig10457.436.1 ID=mRNA_Ecto-sp9_F_contig10457.436.1|Name=mRNA_Ecto-sp9_F_contig10457.436.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10457:338..586+ (Ectocarpus species9 EcSCA_722f female)
GCCTCTTGCGGGGACGACTCGAACGTTCGCGTGTCCGACCTGCGGTCCTC
TTCATCCTTCGGAGTCTCCCAACGGCTGGACGGTATTCACGGCGGCCGTG
CCTGCCACACTGTTCGGTGGCACCCTCTCGATGGCAACCTGCTCCTTTCG
GCAGGGCTGGACTCGACGGTCAACCTCTACGACCTGCGGCGCTTGGCTGC
CCCCCTGCACGTGTTCCGAGGACATTGCCCCTACGCCCTTGCCAGGTGAG
CCTCTTGCGGGGACGACTCGAACGTTCGCGTGTCCGACCTGCGGTCCTCT
TCATCCTTCGGAGTCTCCCAACGGCTGGACGGTATTCACGGCGGCCGTGC
CTGCCACACTGTTCGGTGGCACCCTCTCGATGGCAACCTGCTCCTTTCGG
CAGGGCTGGACTCGACGGTCAACCTCTACGACCTGCGGCGCTTGGCTGCC
CCCCTGCACGTGTTCCGAGGACATTGCCCCTACGCCCTTGCCAGGTGA
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