mRNA_Ecto-sp9_F_contig10456.435.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI) HSP 1 Score: 339 bits (870), Expect = 1.350e-110 Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 1
Query: 1 LKNRSVRLDADLVEAGDGNGAXXXXXXXXXXXXXXXXXXXXXXTLGPDGKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
++N SVRLDADLVEAGDGNGAXXXXXXXXXXXXXXXXXXXX TLGPDGKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQS TDAGIKASKYDFLKREVVQ
Sbjct: 281 IENGSVRLDADLVEAGDGNGAXXXXXXXXXXXXXXXXXXXX--TLGPDGKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQ 480
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE) HSP 1 Score: 335 bits (859), Expect = 3.490e-107 Identity = 193/202 (95.54%), Postives = 196/202 (97.03%), Query Frame = 1
Query: 1 LKNRSVRLDADLVEAGDGNGAXXXXXXXXXXXXXXXXXXXXXXTLGPDGKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
++N SVRLDADLVEAGDG XXXXXXXXXXXXXXXXXXXXX TLGPDGKKKQVPVP+NSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQS TDAGIKASKYDFLKREVVQ
Sbjct: 281 IENGSVRLDADLVEAGDGXXXXXXXXXXXXXXXXXXXXXXXXTTLGPDGKKKQVPVPLNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSMTDAGIKASKYDFLKREVVQ 482
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Sec1-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK2_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.560e-50 Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 1
Query: 151 KKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
+KQV VP+NS DPL+ RD+ VE L P+LQ KAK+IRESY FRAN+DQSITEIH+FVK+IPGL + YKSLN HI+IAEL+ + FR+RWQTER++LEGE C + IE++I Q P + V+RL+CLQS T GI + ++D L+R++VQ
Sbjct: 309 RKQVAVPLNSSDPLYAATRDLSVENLGPYLQGKAKDIRESYAAFRANKDQSITEIHDFVKRIPGLTQTYKSLNQHIHIAELVKRTTDGAPFRQRWQTERSMLEGEACFDAIEDLICEQAPLVSVLRLLCLQSITRGGIPSGRFDALRRDIVQ 460
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCA2_9BACT) HSP 1 Score: 175 bits (443), Expect = 1.240e-46 Identity = 86/164 (52.44%), Postives = 121/164 (73.78%), Query Frame = 1
Query: 148 KKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQVGNLNLHVPIN 639
++ +V V +NS+ L+ +VRD++VE+L FL KAK IR Y+ FRAN+D SITEIH+FVK+IPGL ++YKSLN HINI ELI + FR+RW TER +LEG+ C +++EEMI+MQ+PA V+RL+CLQS T+ GIK +KYD L++ +VQ ++ +N
Sbjct: 290 QRTKVSVALNSNXQLYAEVRDLNVEKLGSFLGQKAKEIRGKYDTFRANKDASITEIHDFVKRIPGLTQNYKSLNQHINITELIKRTTDGSLFRQRWNTERTLLEGDACYDLLEEMIAMQQPANDVLRLLCLQSLTNGGIKYNKYDSLRKAIVQTYGFHMIFALN 453
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGE7_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.250e-45 Identity = 80/158 (50.63%), Postives = 116/158 (73.42%), Query Frame = 1
Query: 166 VPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQVGNLNLHVPIN 639
+ +NS+D + ++RD+++EQL P+L KAK IR Y+ FR+N+D ++TEIH+FVK+IPGL YKSLN HIN+ E I + FR RW TERA+LEG+ C +V+EEMI+MQEP + V+RL+CLQS T+ GI+ +K+DF++RE++Q L +N
Sbjct: 313 IALNSNDKCYVEIRDLNIEQLGPYLGQKAKEIRGMYDGFRSNKDATMTEIHDFVKQIPGLTTKYKSLNQHINLTEEIKRTTDGAAFRLRWNTERALLEGDSCLDVMEEMIAMQEPQLSVLRLVCLQSLTNGGIRTAKFDFIRRELIQTYGYELLFTLN 470
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUT3_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.100e-44 Identity = 87/167 (52.10%), Postives = 114/167 (68.26%), Query Frame = 1
Query: 139 PDGKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQVGNLNLHVPIN 639
P + V V +NS+D LF +VR +++E+L +L KAK IR SY+ FRAN+D +ITEIH+FVK+IPGLKE Y SLN HINI E+I + + FR RW ERA+LE E C ++IEE+I MQEP V+RL CLQS T GI+ KY+ LKRE++Q L +N
Sbjct: 310 PKDPNELVSVALNSNDKLFTEVRGLNIERLGTYLGLKAKEIRGSYDTFRANKDATITEIHDFVKQIPGLKEKYTSLNQHINITEIIKRTTDSVRFRHRWNIERALLEMESCLDLIEELICMQEPVTLVLRLFCLQSLTSGGIRQQKYEHLKREIIQTYGFELAFTLN 476
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLN4_HETAK) HSP 1 Score: 157 bits (397), Expect = 1.520e-43 Identity = 77/146 (52.74%), Postives = 108/146 (73.97%), Query Frame = 1
Query: 172 MNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANR-DQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
+NS DPLF +RD++VEQL P+LQ +AK+IR+ Y +FRANR D +I ++H FVKKIPGL + YK L+ HIN+AE++ + AP FR+RW ERA+LEGE + IE+MI EP ++V+R++CLQS T G+ KY+ +KRE +Q
Sbjct: 3 LNSGDPLFAAIRDLNVEQLGPYLQGRAKDIRQRYEEFRANRKDATINDLHSFVKKIPGLTQTYKVLSQHINLAEVVQRATDAPPFRRRWVAERALLEGERRANSIEQMIWEDEPPLQVLRMLCLQSITGDGVP--KYEAIKREFIQ 146
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Vacuolar (protein sortingassociated protein 33A putat n=2 Tax=Albugo TaxID=65356 RepID=F0WDT6_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.040e-40 Identity = 79/154 (51.30%), Postives = 111/154 (72.08%), Query Frame = 1
Query: 145 GKKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
G+KKQV V +NS+D L+ +VRD HVE+L +LQ +A++IRE Y++FR NRD SI+EI EFVK+IPGLK+ Y+SL HIN+AELI + + FR E A+L GE + +EE I QE + ++R +CLQS T GIKA +YD+++RE++Q
Sbjct: 332 GEKKQVTVSLNSNDELYAQVRDYHVERLGMYLQQQAQSIRERYDEFRKNRDASISEIREFVKRIPGLKQSYQSLQQHINLAELIKKTADQKCFRDLKAEEHAMLTGETIFDQLEERIGFQEALVSILRQLCLQSVTSGGIKAKQYDYIRRELIQ 485
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Vacuolar (protein sorting-associated protein 33A, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM02_PYTIN) HSP 1 Score: 157 bits (398), Expect = 2.760e-40 Identity = 77/153 (50.33%), Postives = 109/153 (71.24%), Query Frame = 1
Query: 148 KKKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQ 606
+KKQ+ +P+NS+D L+ +VRD HVE+L LQ +A++IRE Y++FR NRD SI+EI EFVK+IPGLK++Y+SL HIN+AEL+ + + + FR E A+L GE + +EE I QEP +RV+R CL S T+ G KA Y ++RE+VQ
Sbjct: 296 EKKQITIPLNSNDKLYAEVRDYHVERLGMHLQQQARDIRERYDEFRKNRDASISEIREFVKRIPGLKQNYQSLQQHINLAELVKKTTDSKSFRDLKVQEHAMLMGESIFDQLEERIGFQEPILRVLRQFCLHSVTNGGXKAKNYXLIRRELVQ 448
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPM2_PYTOL) HSP 1 Score: 157 bits (396), Expect = 4.530e-40 Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = 1
Query: 151 KKQVPVPMNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEFVKKIPGLKEDYKSLNLHINIAELIMEGSGAPDFRKRWQTERAVLEGEDCSEVIEEMISMQEPAMRVIRLMCLQSATDAGIKASKYDFLKREVVQVGNLNLHVPIN 639
KKQ+ +P+NS+D L+ +VRD HVE+L LQ +A+ IRE Y++FR NRD SI EI EFVK+IPGLK++Y+SL HIN+AELI + + + FR E ++L GE + +EE I QEP + V+R CLQS G+KA YD ++RE+VQ + + +N
Sbjct: 285 KKQISIPLNSNDKLYSEVRDYHVERLGMHLQQQAREIRERYDEFRKNRDASIGEIREFVKRIPGLKQNYQSLQQHINLAELIKKTTDSKSFRDLKVQEHSMLMGETVFDQMEERIGFQEPILSVLRQFCLQSVASGGVKAKNYDHIRRELVQTYGFEMMLALN 447 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10456.435.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10456.435.1 >prot_Ecto-sp9_F_contig10456.435.1 ID=prot_Ecto-sp9_F_contig10456.435.1|Name=mRNA_Ecto-sp9_F_contig10456.435.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=186bp MNSDDPLFCKVRDVHVEQLMPFLQDKAKNIRESYNQFRANRDQSITEIHEback to top mRNA from alignment at Ecto-sp9_F_contig10456:258..3317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10456.435.1 ID=mRNA_Ecto-sp9_F_contig10456.435.1|Name=mRNA_Ecto-sp9_F_contig10456.435.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3060bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10456:258..3317+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10456:258..3317+ >mRNA_Ecto-sp9_F_contig10456.435.1 ID=mRNA_Ecto-sp9_F_contig10456.435.1|Name=mRNA_Ecto-sp9_F_contig10456.435.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10456:258..3317+ (Ectocarpus species9 EcSCA_722f female)back to top |