mRNA_Ecto-sp9_F_contig10409.401.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10409.401.1
Unique NamemRNA_Ecto-sp9_F_contig10409.401.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.070e-33
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR
Sbjct:   71 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 133
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VL38_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.140e-19
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PGD    ++VVGG  NFL IYN ++TGR+LLSWVPQ QG+ AL+P++ +TDP+LN FR
Sbjct:   73 AMAIPGDGIAEQIVVGGFANFLQIYNFILTGRILLSWVPQAQGIGALQPLFAITDPFLNLFR 134
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: YggT (family protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA7_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 2.150e-19
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG+    +V VGG  NFLSIYNL+IT R+LLSW PQ QGV AL+PVY +TDP+LN FR
Sbjct:   62 AMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFR 123
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.300e-19
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG     +V VGG  NFLSIYNL+ITGR+LLSW PQ QGV  L+PV+ +TDPYLN FR
Sbjct:   74 AMAIPGYGIAEQVFVGGFANFLSIYNLIITGRILLSWFPQAQGVAVLQPVFAITDPYLNLFR 135
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGH8_CYCTE)

HSP 1 Score: 83.2 bits (204), Expect = 8.060e-19
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG+  T ++ VGG  NFLSIYN++IT R+LLSW PQ QG+ AL+P++ +TDP+LN FR
Sbjct:   18 LAMAIPGNGVTEQIFVGGFANFLSIYNIVITARILLSWFPQSQGIGALQPIFAVTDPFLNLFR 80
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G073_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG     +V VGG LNFLSIYN++IT R+LLSW PQ QGV  L+PVY +TDPYLN FR
Sbjct:  104 AMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQAQGVALLQPVYAITDPYLNIFR 165
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRY2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-18
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG     +V VGG  NFLSIYN +IT R+LLSW PQ QGV AL+PVY +TDPYLN FR
Sbjct:  104 MAMAIPGYGVAEQVFVGGFANFLSIYNFIITARILLSWFPQAQGVGALQPVYAITDPYLNLFR 166
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z260_TRICV)

HSP 1 Score: 82.4 bits (202), Expect = 3.860e-18
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG     +V VGG  NFL IYN +IT R+LLSW PQ QG+ AL+PVY +TDPYLN FR
Sbjct:   71 LAMAIPGYGVAEQVFVGGFANFLQIYNFIITARILLSWFPQAQGIGALQPVYAITDPYLNLFR 133
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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Diphthine--ammonia (ligase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAT7_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 4.340e-18
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG+    +V VGG  NFLSIYNL+IT R+LLSW PQ QGV AL+PVY +TDP+LN FR
Sbjct:   62 AMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFR 123
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQ89_THAOC)

HSP 1 Score: 85.9 bits (211), Expect = 4.370e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG+S   +VVVGG  NF+SIYN +IT R+LLSW PQ QG+ AL+PVY +TDPYLN FR
Sbjct:   69 LAIAIPGNSVAEQVVVGGFGNFISIYNTVITARILLSWFPQAQGIGALQPVYQITDPYLNLFR 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.070e-33100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9... [more]
Hypothetical2.140e-1959.68protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
YggT2.150e-1964.52family protein n=1 Tax=Fistulifera solaris TaxID=1... [more]
Hypothetical3.300e-1964.52protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Hypothetical8.060e-1957.14protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Predicted1.310e-1864.52protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
Hypothetical1.720e-1863.49protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical3.860e-1860.32protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Diphthine--ammonia4.340e-1864.52ligase n=1 Tax=Fistulifera solaris TaxID=1519565 R... [more]
Uncharacterized4.370e-1863.49protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10409contigEcto-sp9_F_contig10409:3033..3958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.2e-26
Seed eggNOG ortholog2880.D7FTA9
KEGG koko:K02221
EggNOG free text desc.YGGT family
EggNOG OGs2S4TK@2759,COG0762@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928249.8844652-CDS-Ecto-sp9_F_contig10409:3032..30981622928249.8844652-CDS-Ecto-sp9_F_contig10409:3032..3098Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10409 3033..3098 -
1692277808.9684727-CDS-Ecto-sp9_F_contig10409:3032..30981692277808.9684727-CDS-Ecto-sp9_F_contig10409:3032..3098Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10409 3033..3098 -
1622928249.9008083-CDS-Ecto-sp9_F_contig10409:3835..39581622928249.9008083-CDS-Ecto-sp9_F_contig10409:3835..3958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10409 3836..3958 -
1692277808.9772892-CDS-Ecto-sp9_F_contig10409:3835..39581692277808.9772892-CDS-Ecto-sp9_F_contig10409:3835..3958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10409 3836..3958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10409.401.1prot_Ecto-sp9_F_contig10409.401.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10409 3033..3958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10409.401.1

>prot_Ecto-sp9_F_contig10409.401.1 ID=prot_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=63bp
VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEP
VYLLTDPYLNAFR
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mRNA from alignment at Ecto-sp9_F_contig10409:3033..3958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10409.401.1 ID=mRNA_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10409:3033..3958- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGCTGCCCTCCCTGGAGACTCGTTCACCAGCGAAGTGGTCGTCGG
AGGGGTGCTCAACTTCCTCAGCATCTACAACCTGCTCATCACCGGCCGTG
TCCTGCTCTCCTGGGTGCCGCAGGTGTTCTAGTGTTTTATCGTGATGTAT
TTGCTTTTATCGTGTTCGTTCGGGTTCCGTCGTGTTCTAGTGGGTTCTGT
TGGGGTTCTATTGCTAATCTGGTTGTTCTTCAGGGTCCAATCAAGTCCTT
ATCGATCCACAGATCAGCATTTCATTCATGTTTATTTTTTGTTGTTGTCG
ATGTGTACAGCAAGCGCCCGCGCGTAAGGACCTCTAGTTTCGGCCGAGGC
TGGGATTCTGTATTCCTATGGAGGCTTGTGCTGCAAATGGCCTCTATATA
TTTGGTTTTAGTGTAGGGTTCTTTTCAGTGCTCGCAAAGTCGTCCTCGGT
TTCTCACGGTTTGGGTTTTGATACCATAGAGCAAGATGCAGACGAATGTG
GTCTGTGGTCTAACCTAGCGCCGGCACTACAGTTAGTGCTCACGCTTGGG
AGCCTTTTGTTTGGACTGAGGCTCGTTTTTTTGTTTCGCTGTTGAGTACC
CCGACAGCGCCCAAGTAGGTTTTTAGGCTACTTGACTGAGCGCCTGTTTT
TTGAAGTTCTTAGCTCCCGGGGTACGTGTTCTAAATGTATCACCTCTTTG
CGCCCCCCCGTCTCCCCACCCTCCCGATGTATCTCCTCCCGTGGCTCGGC
CGTTGCCCGCTTTGTACCTCCGTGAGCATCTATCTCCTCTCGCTGTTGAC
TCTCCCTTCCATGTCTTCCCGGCACTTGCGTAAATATCAATACTTCTCGG
TATCTTGTAGCTTCAAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCTCA
CCGACCCCTACCTCAACGCATTCCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10409:3033..3958-

>mRNA_Ecto-sp9_F_contig10409.401.1 ID=mRNA_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10409:3033..3958- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGCTGCCCTCCCTGGAGACTCGTTCACCAGCGAAGTGGTCGTCGG
AGGGGTGCTCAACTTCCTCAGCATCTACAACCTGCTCATCACCGGCCGTG
TCCTGCTCTCCTGGGTGCCGCAGGTGGCGGCTGCCCTCCCTGGAGACTCG
TTCACCAGCGAAGTGGTCGTCGGAGGGGTGCTCAACTTCCTCAGCATCTA
CAACCTGCTCATCACCGGCCGTGTCCTGCTCTCCTGGGTGCCGCAGCTTC
AAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCTCACCGACCCCTACCTC
AACGCATTCCGACTTCAAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCT
CACCGACCCCTACCTCAACGCATTCCGA
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