mRNA_Ecto-sp9_F_contig10392.383.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.230e-49 Identity = 91/113 (80.53%), Postives = 95/113 (84.07%), Query Frame = 2
Query: 191 MISKSKTRKARKRRPRLRRSVRHCGRSHLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAHQG 529
MI KSKTR+ARKR P LRRS HLLVAT MSA V IVESNRLVEFPS C WNDLPHPAQFA+IFLMLALLFGVHRIFGKLD+AAYARLSRAVTAW+NERRHAHQG
Sbjct: 1 MIRKSKTREARKRPPALRRS-------HLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQG 106
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.380e-47 Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query: 191 MISKSKTRKARKRRPRLRRSVRHCGRSHLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAV 490
MISKSKTRKARKRRP LRR RSHLLVAT MSAMIVGIVESNRLVEFPSGV+CTWNDLPHPAQFAVIFLMLALLFGVH+IFGKLD+AAYARLSRAV
Sbjct: 1 MISKSKTRKARKRRPGLRR------RSHLLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK72_9PHAE) HSP 1 Score: 112 bits (281), Expect = 7.550e-27 Identity = 64/96 (66.67%), Postives = 68/96 (70.83%), Query Frame = 2
Query: 122 ECGWRDFFPPSAVTTHRGRWASEMISKSKTRKARKRRPRLRRSVRHCGRSHLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFL 409
E GW+D FPP T R AS MISKSKTR+ARKRRP LRRS HLLVA MSAM V IVESNRLVEFPSG C W +LPHP QFA+IFL
Sbjct: 15 ERGWQDLFPPP-TPTFREVGASPMISKSKTREARKRRPALRRS-------HLLVAIAMSAMTVRIVESNRLVEFPSGARCMWKNLPHPVQFAIIFL 102
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI) HSP 1 Score: 113 bits (283), Expect = 5.920e-26 Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 2
Query: 272 HLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAHQ 526
H LV +SAM+VG+ ES +LVEF SG C W DLPHP QFAV+ +M AL FG++RIFGKLD AAYARLSRAVTAW++E+R H+
Sbjct: 138 HFLVLV-ISAMVVGVAES-KLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHR 220
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.410e-25 Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 2
Query: 272 HLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAHQ 526
H LV T SAM+VG+ ES +LVEF SG C W DLPHP QFAV+ +M AL FG++ IFGKLD AYARLSRAVTAW++E+R H+
Sbjct: 47 HFLVLVT-SAMVVGVAES-KLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHR 129
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI) HSP 1 Score: 103 bits (256), Expect = 9.240e-24 Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 2
Query: 293 MSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAHQ 526
MS +VG+ ESN LV+ PSG C W +L HP QFAV+ +M AL GV+R+FG LD AAYARLSRAV+AW+NE+R Q
Sbjct: 1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQ 78
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F6_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 6.160e-20 Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 2
Query: 293 MSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRH 517
+SA+ V +VE RL+E PSGV C WNDLPH QFA++FLML +L+GV+R+F K D A Y+RL+ A + ERRH
Sbjct: 18 VSAIQVDLVEGKRLIELPSGVRCMWNDLPHGLQFAILFLMLGILYGVNRLFDKADEAMYSRLTCATAELLRERRH 92
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.660e-19 Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 2
Query: 146 PPSAVTTHRG---RWASEMISKSKTRKARKRRPRLRRSVRHC-GRS---HLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAH 523
PP A+ T +G A + KS+TR+ + + LR VR GRS + +SA+ V +VE L+EFP C WNDLPH QFA++FLML +L+GV+R+F K D A + RL+ A +NERRH H
Sbjct: 10 PPGAIQTSQGSKRHQACKTPLKSETRQLSRNKAALRPFVRSSTGRSLGGRRAILALVSAVHVDLVEGKWLIEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCATARLLNERRHHH 142
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 2.630e-17 Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 2
Query: 242 RRSVRHCGRS----HLLVATT--------MSAMI----VGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAH 523
+R +RH R H LV ++ M A+I V +VE L+EFPSG C WNDLPH QFA++ LML +L+GV+R+F K D A Y RL+ A +NERR H
Sbjct: 31 KREIRHMSRKKAALHTLVRSSAGLGGRRAMLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 4.100e-17 Identity = 37/86 (43.02%), Postives = 61/86 (70.93%), Query Frame = 2
Query: 269 SHLLVATTMSAMIVGIVESNRLVEFPSGVVCTWNDLPHPAQFAVIFLMLALLFGVHRIFGKLDNAAYARLSRAVTAWVNERRHAHQ 526
S ++ T++A+ G+V+ + LV+ PSG C W +L HPAQFA++FLM+ +++ ++R+F ++D YARLS A AW++E RH+ Q
Sbjct: 123 SRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQ 208 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10392.383.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10392.383.1 >prot_Ecto-sp9_F_contig10392.383.1 ID=prot_Ecto-sp9_F_contig10392.383.1|Name=mRNA_Ecto-sp9_F_contig10392.383.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=114bp MISKSKTRKARKRRPRLRRSVRHCGRSHLLVATTMSAMIVGIVESNRLVEback to top mRNA from alignment at Ecto-sp9_F_contig10392:78..4231- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10392.383.1 ID=mRNA_Ecto-sp9_F_contig10392.383.1|Name=mRNA_Ecto-sp9_F_contig10392.383.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4154bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10392:78..4231- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10392:78..4231- >mRNA_Ecto-sp9_F_contig10392.383.1 ID=mRNA_Ecto-sp9_F_contig10392.383.1|Name=mRNA_Ecto-sp9_F_contig10392.383.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10392:78..4231- (Ectocarpus species9 EcSCA_722f female)back to top |