mRNA_Ecto-sp9_F_contig1034.341.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1034.341.1
Unique NamemRNA_Ecto-sp9_F_contig1034.341.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1034.341.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 4.930e-112
Identity = 191/259 (73.75%), Postives = 195/259 (75.29%), Query Frame = 1 
Query:   40 MNALAVLILGLHATTAFFTSAGPHSRSTAAAGVHSAKAAISTSRVDTSRMLAGTGTGFFESIFGGQKAKLLENTWQTKEKNNSGETARLSEELFDFLTAEGAKPDDVAVMQKIEELEAAPGVSFNKDYLYDGPWRVLWKTNTAWQRYFDPLKSVANNRAYQWYKEDGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 816
            MNALAVL LGLHAT AF TSAGPHSRST AAGVHSAKAAISTSR D SR+LA TGTGFFES+FGGQK         TKE+NNSGETARLSEELFDFLTAEGAKPDDVAVM+KIEELE                                                DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV
Sbjct:    1 MNALAVLTLGLHATAAFVTSAGPHSRSTTAAGVHSAKAAISTSRADASRILASTGTGFFESLFGGQK---------TKEQNNSGETARLSEELFDFLTAEGAKPDDVAVMEKIEELE------------------------------------------------DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1034.341.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.930e-11273.75protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1034contigEcto-sp9_F_contig1034:5218..9669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007180.1
Exons6
Model size1238
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1034.341.1prot_Ecto-sp9_F_contig1034.341.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1034 5257..9250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.7824252-UTR-Ecto-sp9_F_contig1034:5217..52561622928237.7824252-UTR-Ecto-sp9_F_contig1034:5217..5256Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 5218..5256 +
1692277805.6644912-UTR-Ecto-sp9_F_contig1034:5217..52561692277805.6644912-UTR-Ecto-sp9_F_contig1034:5217..5256Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 5218..5256 +
1622928237.9144583-UTR-Ecto-sp9_F_contig1034:9250..96691622928237.9144583-UTR-Ecto-sp9_F_contig1034:9250..9669Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 9251..9669 +
1692277805.7615585-UTR-Ecto-sp9_F_contig1034:9250..96691692277805.7615585-UTR-Ecto-sp9_F_contig1034:9250..9669Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 9251..9669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.8065515-CDS-Ecto-sp9_F_contig1034:5256..54611622928237.8065515-CDS-Ecto-sp9_F_contig1034:5256..5461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 5257..5461 +
1692277805.6891801-CDS-Ecto-sp9_F_contig1034:5256..54611692277805.6891801-CDS-Ecto-sp9_F_contig1034:5256..5461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 5257..5461 +
1622928237.8278913-CDS-Ecto-sp9_F_contig1034:6553..66991622928237.8278913-CDS-Ecto-sp9_F_contig1034:6553..6699Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 6554..6699 +
1692277805.7050831-CDS-Ecto-sp9_F_contig1034:6553..66991692277805.7050831-CDS-Ecto-sp9_F_contig1034:6553..6699Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 6554..6699 +
1622928237.846824-CDS-Ecto-sp9_F_contig1034:7242..73861622928237.846824-CDS-Ecto-sp9_F_contig1034:7242..7386Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 7243..7386 +
1692277805.7168875-CDS-Ecto-sp9_F_contig1034:7242..73861692277805.7168875-CDS-Ecto-sp9_F_contig1034:7242..7386Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 7243..7386 +
1622928237.8650389-CDS-Ecto-sp9_F_contig1034:7821..79261622928237.8650389-CDS-Ecto-sp9_F_contig1034:7821..7926Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 7822..7926 +
1692277805.727897-CDS-Ecto-sp9_F_contig1034:7821..79261692277805.727897-CDS-Ecto-sp9_F_contig1034:7821..7926Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 7822..7926 +
1622928237.879601-CDS-Ecto-sp9_F_contig1034:8502..85711622928237.879601-CDS-Ecto-sp9_F_contig1034:8502..8571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 8503..8571 +
1692277805.7367167-CDS-Ecto-sp9_F_contig1034:8502..85711692277805.7367167-CDS-Ecto-sp9_F_contig1034:8502..8571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 8503..8571 +
1622928237.8951514-CDS-Ecto-sp9_F_contig1034:9139..92501622928237.8951514-CDS-Ecto-sp9_F_contig1034:9139..9250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 9140..9250 +
1692277805.750134-CDS-Ecto-sp9_F_contig1034:9139..92501692277805.750134-CDS-Ecto-sp9_F_contig1034:9139..9250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 9140..9250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1034.341.1

>prot_Ecto-sp9_F_contig1034.341.1 ID=prot_Ecto-sp9_F_contig1034.341.1|Name=mRNA_Ecto-sp9_F_contig1034.341.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=260bp
MNALAVLILGLHATTAFFTSAGPHSRSTAAAGVHSAKAAISTSRVDTSRM
LAGTGTGFFESIFGGQKAKLLENTWQTKEKNNSGETARLSEELFDFLTAE
GAKPDDVAVMQKIEELEAAPGVSFNKDYLYDGPWRVLWKTNTAWQRYFDP
LKSVANNRAYQWYKEDGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYE
VNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQ
TKADEVVPV*
back to top

mRNA from alignment at Ecto-sp9_F_contig1034:5218..9669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1034.341.1 ID=mRNA_Ecto-sp9_F_contig1034.341.1|Name=mRNA_Ecto-sp9_F_contig1034.341.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4452bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:5218..9669+ (Ectocarpus species9 EcSCA_722f female)
CCAACGTCCAAGTCACCACACGCGAAGGCAACGAAAACGATGAATGCCTT
GGCGGTGCTGATCCTGGGCCTCCACGCCACGACCGCCTTCTTCACCTCTG
CCGGTCCTCATTCGCGGAGCACCGCTGCCGCTGGTGTCCACAGCGCCAAG
GCGGCCATCAGCACCAGCAGGGTTGACACAAGCAGGATGTTGGCCGGCAC
TGGCACCGGGTTTTTCGAATCCATCTTCGGTGGACAGAAGGCGAGTCCCG
ACGACATCTCACTTTTCGGAGGGATATTGCTATGTATACACCGACACTAA
ACGTGCCCGCGACGCGAGATGACACCTTTTCAGGGTGCCCGAGTCTTGTT
TGCTCGAGGTCGGTTGCTCCAGAACCTTTGCCACGACTGGGAGAGGTGCT
ACAACAACGGAGGGATAAGCATGGCTTCCTGACAATAATATCTTGTTCTT
CTGCTTTGGTCCCACCGTGCTCCGCATCGTCGGACACGTTCTCCTGTTAT
GCAGAAGGCAGACGGGCATTCCCCGTCCCGTCGAGCGATGCCTTCCGCAT
CGTCATATCGAAAACGCCAACATGGCAACCCATGGAAACGTAACCACCTC
CTCCCCGCTTCTATACACCTTGGATGACGGAGTACCCTCGGCGTGCATAC
TGCGGTACTCGCGCCGACATCTCCGCGCAATCTCCCGGGGAAATGTTGCG
AGTGATGTTTACTTTTAGGCAGTAGTGTTTACACATTGATAAATAGTAGA
TCTTTAGGACTAGCGCCTTCTGATTGGTCGGGCGTTGTTTGGCGTTGGTT
CTAACGGCCGATTCCTCTCCAGCGCCCTCTCCCCGTTCCGCATTGCGAGC
ACGCGACGCAGCCGCGTGCTCGCCCATTTCGCAGGGATTGATCATGTTGG
CGAGTACGACTGATACGTTTCCCTACGGCATCAAGGTCGTTGCGTTGTTC
CGGGAGGGTCTTCAGTGAACGACAGCATATTGGCCAACATAGTTTTTCAT
AGCTGATGAGTGGCCGCTGTAGCAGCGCGGCCTTGGCACCGTGTACATGC
TGTTTGCCCGAAATATGCGTTGGGATATTGTACTGTAGTACTTGTACAAA
ATTCAAATATTTTCCATCTCTGTTTATGGTATCCCACAGCTCACATGCTA
CAACAACAATCACCAATGTGCGATCAGAACCAAACATCACCCGACCCTCG
GTGTGTTTTTGAGGCACACACGCCGCTGACTACGGCATTTGTTCCAACTG
TTGTTGTTGTTGTTGTTATTGTTGCTGTTGTTGTTGTCTTCACACAAATT
ATTGTTCCGATCTCTGCTCGGCTGTCTCACCCCAAGAACTACTTGAAAAC
ACTTGGCAGACAAAAGAGAAAAACAACTCCGGAGAGACGGCCCGGCTAAG
CGAGGAGCTTTTCGACTTCCTGACCGCCGAGGGCGCCAAGCCTGACGATG
TGGCTGTGATGCAGAAGATCGAAGAGCTAGAGGTATGTGCTATCTGGGTT
GGCCATCAATTAGCCCCCAAGTACCTTTCCATCTTTACGTCACCCCAGGG
TCTCTCTTGTGCCCCGAGGAATGGCGAGTGTTCGCACCGCCTAGACCGAC
TTGCTTAGCTTGGTTGCATCATATCGTTTAGGGTGCGATATCGAACCGAC
AAGCGTACGGAAACCTCTCGACGAGGCTTTTCAAGAATTACCGTTTTCCG
GAGGTGGTTTAGGGAGGGTGCAATCACACGCTGTTTTTACGGTATACTTG
TCTTCTTTTGGCCGTATAAATGTGCATGAACTTATCGTGATCCGCAAACC
ATTGGCGTGTAGCTTAAAGCTGATGATGCGTTGGGGGCGTGGTGTGGGTC
TTCGCTCGATTGTTACATTCATCACCAGCATGCCCCCCGTGTAGTTAGTT
CAAAGCATAGTTTAGTGGTAAATATTTGCCAGCGCCCAGCAGGTGTGTTC
TACGCCTGTCGATGGGTTGTATTTGCAACGCATTGCGACAGCAACCCCGA
AACGAGAATAACTACTGTCGCACAGGCGGCCCCAGGAGTTTCGTTCAACA
AGGACTACTTGTACGATGGGCCGTGGCGGGTGCTGTGGAAAACCAACACG
GCTTGGCAGCGGTACTTCGATCCCCTCAAAAGCGTGGCCAATAACCGCGC
GTATCAGTGGTACAAAGAGGTGAGGGTGCCGTCAGCAGAACGCAGAGAGC
TCGTGTGGCAAGATCATCACACGAAGAATGATCGCGCGAAGAGAAGATAA
AACGAGCAAATACAAATACACGTACACTAGTCGCAACCTTGTCTTTTGTT
CTCGTCTTTTCTCGATTTTTTCGGTTGTCGTGTGTAGCTGCGTAATAGCG
CAGATTGGCACTAGCACTGCGCGCGGTTAGTCGCCCTTTCACACACATGC
CCAACAAGAGGGGGCGGCAGTAGTCTTCGTCTTTCTTTGTAGTGCGGGGG
CACGAAAGGAGTAGGTGCCGCAGACTATGCTGCTTGGCTGCTTTTCACGG
CGAGCACGTCAACAACCCAGACAAAATATGCACCCTCGTTGTTTCCATGA
CCTGGTCCCATGCTGTTCCCCCTCTCGACCGTGTCTTCGGGAACCGGGGG
GCAGGATGGATCGGTTACCAACATTGCACAAGCTCTGGGCGACAAGTTGT
ACGTGACTGTAGACGGACAGGGGTCCCCGGCATCTACGGATACGGACCTA
CCGTACGAGGTGATTTTTTCCTCAGTTTTAGGAGAATCGGGTGGTTTAGC
CTTCTTCGGTATGGCGTTCGGCCCCAGTAGGGTGTGTGCGGCTCTAACGC
TCACGGGAATAGCACGTTTTTTTCGAGCGTGCACGAAAGAGCAACCCTAT
ACAATAATAACTGGTGGTTGCTCCTGTGAATGTCTTTATCGCCTACATCA
AGAATGTTTCTCTATATTTTGACCGCAGGCGCGGGAGTGCCATAAAGGAC
CGCTCGAGGGCGCCTCCACGCACTTGGAGACGAATCTCGTTTTGCCTGCT
GTTGACATCGCAAATTCTCACCCTACCTGAGCAAGATCCGCGTTTGCTTG
CGCATGCATTTACACGTTTCTCGAGTTTTCGCGTTCTCACGCCGTCCCAA
GAAACGCGGTAGGCGGACAGATTGGTATGGTCTTCGTATGGCGCAATTGT
CGACGCCAGGTTCCTGTGTACCCCTTTTGGCTATAAGACGCGTCCGCGTC
AAGTGTCCGCCGACTGATCGCCTCGCGTCATCGTACTTCTATGTCGCTTG
CCTACTGACAAAAACTCCCCGATCGCTCTTACTAGGTTAACGTGGAGGTC
TCCCGAGCATGGCTTCACGCGCTGGGCGGGAAGATACCGCTAGACTTCAT
CAAGGTGGGAGGCGCGTGTAGCAAGATGCAGCCGCCCATCGCTCTCCTTG
CTTGCTCCTTCGAGCGTCGTTTGCCGATACCTCGGAGCTGATGTTTTGCT
CCGTGAATGATTGGTTGGCCTGTACTACTTGCATCAGCTCCACCGTAGCT
TGTGTGTCGCACTGCAGTGAAGCACTGGGAAAAGAGCGAAGTGAAAACTA
TCTATTTTTCGCACTCACGACGAAATGAGACACGTCGTAGCCAGCAGAGG
CAGAGTCACCTGATTGGTGAACCGAGACACTCCAACGGCGTTCCTTTTGG
GGTTTCGTGGAACAAATGCCCTGTGCGCGGGGACTCCACAACGATCTGGA
AACGCAACCGAGGGGTCTTCTCCGGAATGTATAGCTACGCTGGCGACCCC
CGTTGTAGTGGGGGAAGGGATTGTTTGTCCTGCCCGATGGTATCGCTTTT
CATCACAAATGACGACGTATTTGGAGTTCGTAGCCTCAGCCAAACGCACC
TGCTGTACTTTCCGTCACAAACCCACGGTTGTACCTACCGCCCGCCGATT
CCGTGTGCTAAATCGTCCTCAGGGGAAAGGGACAACGTTCGTGGTGTACA
ACGACGCCAGGTTGAGGATTTTCCGATCCGATACCGGTGGAGTTGTTGTG
CAGACAAAAGCCGACGAGGTTGTGCCTGTGTGACCTGAGCTCACGTGGCA
ATTCTGGCTACAAAATCCCCACCCACCGCGGTCGAGAGGTTTACGATGAT
GATGGCGTTGCGTCGTCGTCAACATGACAACTTTTTACACGCAAGATTCT
AGAATAGATACGGCACTCCGTTGTGGTTGGTCATATAGTAGATTCAGCAA
CCTGTTTGAGTGTGTCTCGCTTGGAGTGGTCGATTCCCGTTGGTGTTGTC
TCGAAGTCCGAGGAATGCGGGAAATATACGCCTCTTTGCTTGGTTTCGGG
CCTACGACAGTAGTGTATTTGCACTCGCCGCGCGCGGGATACAGACGTGA
ACACACGCACATTTACGAGCTGCCATTTTGAATCGTGCAAGCCAGCTGCC
ATTTGGTCATTTGAAGCTTGTGTGGACTTAGCTGCGGTGCTCAGTATCGA
AG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1034:5218..9669+

>mRNA_Ecto-sp9_F_contig1034.341.1 ID=mRNA_Ecto-sp9_F_contig1034.341.1|Name=mRNA_Ecto-sp9_F_contig1034.341.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:5218..9669+ (Ectocarpus species9 EcSCA_722f female)
ATGAATGCCTTGGCGGTGCTGATCCTGGGCCTCCACGCCACGACCGCCTT
CTTCACCTCTGCCGGTCCTCATTCGCGGAGCACCGCTGCCGCTGGTGTCC
ACAGCGCCAAGGCGGCCATCAGCACCAGCAGGGTTGACACAAGCAGGATG
TTGGCCGGCACTGGCACCGGGTTTTTCGAATCCATCTTCGGTGGACAGAA
GGCGAATGAATGCCTTGGCGGTGCTGATCCTGGGCCTCCACGCCACGACC
GCCTTCTTCACCTCTGCCGGTCCTCATTCGCGGAGCACCGCTGCCGCTGG
TGTCCACAGCGCCAAGGCGGCCATCAGCACCAGCAGGGTTGACACAAGCA
GGATGTTGGCCGGCACTGGCACCGGGTTTTTCGAATCCATCTTCGGTGGA
CAGAAGGCGAAACTACTTGAAAACACTTGGCAGACAAAAGAGAAAAACAA
CTCCGGAGAGACGGCCCGGCTAAGCGAGGAGCTTTTCGACTTCCTGACCG
CCGAGGGCGCCAAGCCTGACGATGTGGCTGTGATGCAGAAGATCGAAGAG
CTAGAGAACTACTTGAAAACACTTGGCAGACAAAAGAGAAAAACAACTCC
GGAGAGACGGCCCGGCTAAGCGAGGAGCTTTTCGACTTCCTGACCGCCGA
GGGCGCCAAGCCTGACGATGTGGCTGTGATGCAGAAGATCGAAGAGCTAG
AGGCGGCCCCAGGAGTTTCGTTCAACAAGGACTACTTGTACGATGGGCCG
TGGCGGGTGCTGTGGAAAACCAACACGGCTTGGCAGCGGTACTTCGATCC
CCTCAAAAGCGTGGCCAATAACCGCGCGTATCAGTGGTACAAAGAGGCGG
CCCCAGGAGTTTCGTTCAACAAGGACTACTTGTACGATGGGCCGTGGCGG
GTGCTGTGGAAAACCAACACGGCTTGGCAGCGGTACTTCGATCCCCTCAA
AAGCGTGGCCAATAACCGCGCGTATCAGTGGTACAAAGAGGATGGATCGG
TTACCAACATTGCACAAGCTCTGGGCGACAAGTTGTACGTGACTGTAGAC
GGACAGGGGTCCCCGGCATCTACGGATACGGACCTACCGTACGAGGATGG
ATCGGTTACCAACATTGCACAAGCTCTGGGCGACAAGTTGTACGTGACTG
TAGACGGACAGGGGTCCCCGGCATCTACGGATACGGACCTACCGTACGAG
GTTAACGTGGAGGTCTCCCGAGCATGGCTTCACGCGCTGGGCGGGAAGAT
ACCGCTAGACTTCATCAAGGTTAACGTGGAGGTCTCCCGAGCATGGCTTC
ACGCGCTGGGCGGGAAGATACCGCTAGACTTCATCAAGGGGAAAGGGACA
ACGTTCGTGGTGTACAACGACGCCAGGTTGAGGATTTTCCGATCCGATAC
CGGTGGAGTTGTTGTGCAGACAAAAGCCGACGAGGTTGTGCCTGTGTGAG
GGAAAGGGACAACGTTCGTGGTGTACAACGACGCCAGGTTGAGGATTTTC
CGATCCGATACCGGTGGAGTTGTTGTGCAGACAAAAGCCGACGAGGTTGT
GCCTGTGTGA
back to top