mRNA_Ecto-sp9_F_contig10310.321.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10310.321.1
Unique NamemRNA_Ecto-sp9_F_contig10310.321.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10310.321.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2F5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.470e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:   32 MSFNGRRSPGNVSRGSISIITLLFALPKLLLLPTLAGAFFAPIGVLSSSAARLPS 196
            MSFNGRRSPG+VSRGSISIITLLFALPKLLLLPTLAGAFFAPIGVLSSSAAR+PS
Sbjct:    1 MSFNGRRSPGSVSRGSISIITLLFALPKLLLLPTLAGAFFAPIGVLSSSAARIPS 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10310.321.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.470e-2296.36protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10310contigEcto-sp9_F_contig10310:1032..3679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D7FID2
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00995
KEGG ReactionR01801
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009668,GO:0009941,GO:0009987,GO:0010027,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030145,GO:0031967,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0046872,GO:0046914,GO:0061024,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.cardiolipin synthase activity
EggNOG OGsCOG0558@1,KOG1617@2759
EC2.7.8.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorychloroplast
Exons3
Model size312
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10310.321.1prot_Ecto-sp9_F_contig10310.321.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10310 1032..3648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.868649-CDS-Ecto-sp9_F_contig10310:1031..11091622928232.868649-CDS-Ecto-sp9_F_contig10310:1031..1109Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 1032..1109 -
1692277804.4421685-CDS-Ecto-sp9_F_contig10310:1031..11091692277804.4421685-CDS-Ecto-sp9_F_contig10310:1031..1109Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 1032..1109 -
1622928232.8839266-CDS-Ecto-sp9_F_contig10310:2174..22921622928232.8839266-CDS-Ecto-sp9_F_contig10310:2174..2292Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 2175..2292 -
1692277804.4540856-CDS-Ecto-sp9_F_contig10310:2174..22921692277804.4540856-CDS-Ecto-sp9_F_contig10310:2174..2292Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 2175..2292 -
1622928232.8944829-CDS-Ecto-sp9_F_contig10310:3565..36481622928232.8944829-CDS-Ecto-sp9_F_contig10310:3565..3648Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 3566..3648 -
1692277804.4634264-CDS-Ecto-sp9_F_contig10310:3565..36481692277804.4634264-CDS-Ecto-sp9_F_contig10310:3565..3648Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10310 3566..3648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.9064562-UTR-Ecto-sp9_F_contig10310:3648..36791622928232.9064562-UTR-Ecto-sp9_F_contig10310:3648..3679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10310 3649..3679 -
1692277804.4725542-UTR-Ecto-sp9_F_contig10310:3648..36791692277804.4725542-UTR-Ecto-sp9_F_contig10310:3648..3679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10310 3649..3679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10310.321.1

>prot_Ecto-sp9_F_contig10310.321.1 ID=prot_Ecto-sp9_F_contig10310.321.1|Name=mRNA_Ecto-sp9_F_contig10310.321.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
MSFNGRRSPGNVSRGSISIITLLFALPKLLLLPTLAGAFFAPIGVLSSSA
ARLPSSSASPQRGADRTQRPPHGGGLIFTLSGGASSSDSSSDM
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mRNA from alignment at Ecto-sp9_F_contig10310:1032..3679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10310.321.1 ID=mRNA_Ecto-sp9_F_contig10310.321.1|Name=mRNA_Ecto-sp9_F_contig10310.321.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10310:1032..3679- (Ectocarpus species9 EcSCA_722f female)
ATCCCGTGCTCCTCCCCTTCTCTCTGTGGTGATGAGCTTCAACGGCAGAC
GATCTCCTGGTAACGTCAGTCGAGGTTCGATCTCGATCATCACGCTTCTT
TTCGCCCTTCCCAAGTAAGTTTCGCCTGCGGCCGTGATTCGAGTTTCTGG
AGCCCCCTCCCGCCTGATGTCGGGATCGGCCACCGAGTCAACGCCATAAA
TAGTGCTGTGGGGGCTGTGTACTGTAGTTGATGTAGCAGTAGCTGCACTG
GCCTTACCCGAGGGGCCTCGGTCTGCTGCGAGACAAGAAGATTGTAGCAG
GGCGCTCCGCCGGCGCGATGCAGCCAATCTGTTGTATTTTTTTTTTTTTT
CTCGGCGGATGCTCTAGTCTACTGCTATACGTATTGTAGCGCACACCTGT
CATCGCCCTCCCCTCCACGTGCACACCCAAGCACACACATCACCCCCGTT
GGTGACACCATGGTTCTCGACCTGCTGCTACACGTCCTCCGTGTTGTTGG
GCATAGTGGAACAGATACCACACTCGCGCCTCCTATCGTGGGCCGTAACT
CCTTTGGAGTCAACCAATGTCGGTCCGGCCGGTAGTTTTGTTCGCGTACG
ATGTACATGTATCAGCATGTACCGCCGTTGGTATAGGTCCTAGCTTCTGT
TGGGGCACTCTTTGTGCCTTATGCCAAGCTCTCTGCCCTCCGCTCGCTGG
TGACGTACTTCCAATACGATTGTTACTGTTGTGGCAAAGAAGATTGTGCC
CGTGTATACCAACCGAAATCAAAGCATGGAATGTAACCTCGTTACGCGGC
GGATATTTGTACTTGTACATATTTTGTACTTAGTCTATCCCTGGTACAAC
GGGACGGCATGTACATATGCATACATGTACAACAGCAGTACCCGCGGTAC
ATGTACACATCACTGAAGACGCCTCTCGGCTAACATGCTGAGCAGATACA
ACTCCTTTCCTTGGCTTGCAAAACGCATCGTTTCGTGTTCGCTGCTCGGC
AATACCCGCTGTCATCAGGCCCTTCGACCCTCGCCTTAACCCCCTGCAGA
ATGTACTTCAAAGGAAGTATGCATACGACGTTGAACAGGAACGAATGTCT
TATTTTACCTTTTACCCTGTTCGTTCTGGGCCGTTCGACGATCCCGGAAA
GCGTCGACGATCAGTTCCCACACCTGGGTACAGCACGAAGAAAGCGTTGC
TTTGCCCCTTTCGGTGCGTGCCAGTCAACAGCTGGCGCTGCTAATTTACT
CTCATGTTTTTGTGAAGCCTCCCTCAGTCGTACGCGTCGAGCCGTCACCA
TGTGTTCCCGCGGCATGTGTGTGTTGACCCCCGCCCCGTGTTCTCTCGTC
TGTGGCCTCCCTCTGTGGTGGAATTCATTTGCCGTAGACTCCTGCTGCTG
CCGACTCTGGCGGGAGCGTTCTTTGCGCCGATAGGGGTGCTGTCCTCGTC
CGCTGCGAGGCTCCCTTCGTCATCGGCGTCGCCTCAGAGGGGAGCAGACC
GCACGGTGAGCAAAAGGAAGCGGTAAATACAGTGGGAGGGGGCTCAGTAG
TGCCGGCATGCGCCCGCCAGGTTCACCAGTGGCACTTTGCCAGGCACCCA
GCACTATTCAGAGAATGAGACACAGCAAGCTGCGTTTCCCACATTCTGTG
TTCCCGGGGGCATGCTTGGTGGCACACGTTGCACAGAATTAACGAACCAC
GATTTTTCCAAAGTTTCCGTCCGTGTCACGCGGTTTCACCAGTGGCACTA
TTCAAGTGGCACAATTGAGGGACCCCCACTGTACTCGGAAGAGGTCGACG
ATGCGTTTGAGCACATTGCTAAAAGTGCTGCTGCGGTTTTGCTGTGTTCT
GCTGCTGTAGTGTGTTGGCTCATAAAAGCTCATGGAAAAATAATTAAGTT
TGATCTTCGTATAACTAAACAGAAGCAGACGAGAGGTGCGTTCTATTTGT
TCATGCTTCTGCTTCTGCTGTGATGTTTTCGTGTGCTCTGTCGTGACCGG
GGAGGATCGCATGGCGAGAAGTTGACCATATTCCCAACCCTTTCTACGTT
GTTTTTCTCCAAGGTGTTTAAAAGAATGTTGCTGTCGAACAGCAAGGATA
TTGTTGCTCGTGTACCGTCCCCCTGCCGCACCGCCTTGAGGACGGTTTTT
CTCGGATGCCTTGTCGGGTAGATCCAACCCACAAGTACCATGCCGTTATT
GCACCTGTTTTTCACGGAGAGCGTGGAATCATCCTGCCGTGGACCCGTCG
GCTCTCTGTGTTTCTCTCTCCGTGTTTCTCTCTCTCGGTGTCTCTCGTTC
TCTCCTTCTCTCTCACACACACACAAACACCCACACACACACACGCACTT
CCCTCTCTCTCTCTCGCTCTCCCTCTCTCTTGTCTCTCTCTCTCTCGCTC
TCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTGTC
TGTCTGTCTCTCTCTCTGTCTTTCTCCCTGTCACCCTCACACACACACAC
TCCCCCTCACTCTCTTTCATCTCCCGTGTTGGCCCACCCCCATCTCATGC
CCACGACGCCTCCCAAACAGCAACGACCTCCCCACGGCGGAGGTCTCATC
TTCACACTATCGGGAGGCGCAAGCAGCAGCGACAGCTCTAGCGACATG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10310:1032..3679-

>mRNA_Ecto-sp9_F_contig10310.321.1 ID=mRNA_Ecto-sp9_F_contig10310.321.1|Name=mRNA_Ecto-sp9_F_contig10310.321.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10310:1032..3679- (Ectocarpus species9 EcSCA_722f female)
ATGAGCTTCAACGGCAGACGATCTCCTGGTAACGTCAGTCGAGGTTCGAT
CTCGATCATCACGCTTCTTTTCGCCCTTCCCAAATGAGCTTCAACGGCAG
ACGATCTCCTGGTAACGTCAGTCGAGGTTCGATCTCGATCATCACGCTTC
TTTTCGCCCTTCCCAAACTCCTGCTGCTGCCGACTCTGGCGGGAGCGTTC
TTTGCGCCGATAGGGGTGCTGTCCTCGTCCGCTGCGAGGCTCCCTTCGTC
ATCGGCGTCGCCTCAGAGGGGAGCAGACCGCACGACTCCTGCTGCTGCCG
ACTCTGGCGGGAGCGTTCTTTGCGCCGATAGGGGTGCTGTCCTCGTCCGC
TGCGAGGCTCCCTTCGTCATCGGCGTCGCCTCAGAGGGGAGCAGACCGCA
CGCAACGACCTCCCCACGGCGGAGGTCTCATCTTCACACTATCGGGAGGC
GCAAGCAGCAGCGACAGCTCTAGCGACATGCAACGACCTCCCCACGGCGG
AGGTCTCATCTTCACACTATCGGGAGGCGCAAGCAGCAGCGACAGCTCTA
GCGACATG
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