mRNA_Ecto-sp9_F_contig10304.313.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10304.313.1
Unique NamemRNA_Ecto-sp9_F_contig10304.313.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10304.313.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS4_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.330e-63
Identity = 115/124 (92.74%), Postives = 115/124 (92.74%), Query Frame = -2 
Query:   15 AEEKETVAGVRGGDEHLGGSLWGAFVGGGEGGCASAPSFVVSGTVDDHRKRGRLKAAPDGGGADDDRRLEALASVPDVLVAGPGAERPIGDQDNRRAGDHSSCETLASGGERSGLSGSSSSLVP 386
            AEEKETVAGVRGGDE LGGS WGAFVGGGEGGCASAPSFVVSGTVDDHRKRGRLKAAPDGG ADDDRRLEALASVPDVLVAGPGAERPIGD DNRR GDHSS ETLASGGER GLSGS SS VP
Sbjct:  553 AEEKETVAGVRGGDEQLGGSFWGAFVGGGEGGCASAPSFVVSGTVDDHRKRGRLKAAPDGGSADDDRRLEALASVPDVLVAGPGAERPIGDHDNRRIGDHSSRETLASGGERGGLSGSGSSPVP 676
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BLAST of mRNA_Ecto-sp9_F_contig10304.313.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGS9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.710e-47
Identity = 95/122 (77.87%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:   15 EKETVAGVRGGDEHLGGSLWGAFVGGGEGGCASAPSFVVSGTVDDHRKRGRLKAAPDGGGADDDRRLEALASVPDVLVAGPGAERPIGDQDNRRAGDHSSCETLASGGERSGLSGSSSSLVP 380
            E+ETV GVRGGDEHL GS W AFVGG        PSFVVSGTVDDHRKRGRLKAAPD       RRLEALASVPDVLVAGPGAERP+GD D RRAGDHSS ETLASGGER GLSGS SS VP
Sbjct:  745 EQETVVGVRGGDEHLDGSFWEAFVGGXXXXXXXXPSFVVSGTVDDHRKRGRLKAAPDXXXXXXXRRLEALASVPDVLVAGPGAERPVGDHDIRRAGDHSSRETLASGGERGGLSGSGSSPVP 866
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10304.313.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.330e-6392.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.710e-4777.87protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10304contigEcto-sp9_F_contig10304:1326..1713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.791929-CDS-Ecto-sp9_F_contig10304:1325..17121622928231.791929-CDS-Ecto-sp9_F_contig10304:1325..1712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10304 1326..1712 +
1692277803.9674604-CDS-Ecto-sp9_F_contig10304:1325..17121692277803.9674604-CDS-Ecto-sp9_F_contig10304:1325..1712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10304 1326..1712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10304.313.1prot_Ecto-sp9_F_contig10304.313.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10304 1326..1712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10304.313.1

>prot_Ecto-sp9_F_contig10304.313.1 ID=prot_Ecto-sp9_F_contig10304.313.1|Name=mRNA_Ecto-sp9_F_contig10304.313.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp
ALAAGGTRLELLPLRPLRSPPDASVSQEEWSPARRLSWSPIGLSAPGPAT
RTSGTEARASRRRSSSAPPPSGAAFNRPRFRWSSTVPLTTKDGADAHPPS
PPPTNAPHKLPPRCSSPPRTPATVSFSSA
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mRNA from alignment at Ecto-sp9_F_contig10304:1326..1713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10304.313.1 ID=mRNA_Ecto-sp9_F_contig10304.313.1|Name=mRNA_Ecto-sp9_F_contig10304.313.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=388bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10304:1326..1713+ (Ectocarpus species9 EcSCA_722f female)
GCTCTTGCTGCTGGTGGTACTAGGCTCGAGCTGCTACCGCTGAGGCCACT
GCGCTCCCCTCCCGACGCCAGCGTTTCGCAGGAAGAGTGGTCTCCGGCCC
GGCGATTATCCTGGTCTCCTATTGGTCTTTCCGCTCCGGGTCCGGCAACA
AGAACATCCGGGACGGAGGCAAGGGCTTCCAGGCGGCGGTCGTCATCGGC
GCCGCCGCCATCAGGTGCTGCCTTCAACCGCCCCCGCTTCCGGTGGTCGT
CGACGGTGCCGCTCACCACAAAGGACGGGGCCGACGCGCACCCTCCCTCC
CCGCCGCCTACGAACGCTCCCCATAAGCTGCCGCCGAGGTGTTCGTCGCC
GCCTCGTACTCCTGCTACCGTTTCTTTTTCTTCTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10304:1326..1713+

>mRNA_Ecto-sp9_F_contig10304.313.1 ID=mRNA_Ecto-sp9_F_contig10304.313.1|Name=mRNA_Ecto-sp9_F_contig10304.313.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10304:1326..1713+ (Ectocarpus species9 EcSCA_722f female)
GCTCTTGCTGCTGGTGGTACTAGGCTCGAGCTGCTACCGCTGAGGCCACT
GCGCTCCCCTCCCGACGCCAGCGTTTCGCAGGAAGAGTGGTCTCCGGCCC
GGCGATTATCCTGGTCTCCTATTGGTCTTTCCGCTCCGGGTCCGGCAACA
AGAACATCCGGGACGGAGGCAAGGGCTTCCAGGCGGCGGTCGTCATCGGC
GCCGCCGCCATCAGGTGCTGCCTTCAACCGCCCCCGCTTCCGGTGGTCGT
CGACGGTGCCGCTCACCACAAAGGACGGGGCCGACGCGCACCCTCCCTCC
CCGCCGCCTACGAACGCTCCCCATAAGCTGCCGCCGAGGTGTTCGTCGCC
GCCTCGTACTCCTGCTACCGTTTCTTTTTCTTCTGCCGCTCTTGCTGCTG
GTGGTACTAGGCTCGAGCTGCTACCGCTGAGGCCACTGCGCTCCCCTCCC
GACGCCAGCGTTTCGCAGGAAGAGTGGTCTCCGGCCCGGCGATTATCCTG
GTCTCCTATTGGTCTTTCCGCTCCGGGTCCGGCAACAAGAACATCCGGGA
CGGAGGCAAGGGCTTCCAGGCGGCGGTCGTCATCGGCGCCGCCGCCATCA
GGTGCTGCCTTCAACCGCCCCCGCTTCCGGTGGTCGTCGACGGTGCCGCT
CACCACAAAGGACGGGGCCGACGCGCACCCTCCCTCCCCGCCGCCTACGA
ACGCTCCCCATAAGCTGCCGCCGAGGTGTTCGTCGCCGCCTCGTACTCCT
GCTACCGTTTCTTTTTCTTCTGCC
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