mRNA_Ecto-sp9_F_contig1030.310.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1030.310.1
Unique NamemRNA_Ecto-sp9_F_contig1030.310.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.380e-61
Identity = 122/218 (55.96%), Postives = 129/218 (59.17%), Query Frame = 3 
Query:  183 FYWDDIILAGAVLLFCGAAPMSCLAIRISRVKDAFNLREELCCVFIGCSCCV-----IQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASA--------------------------------------------------------------------------HILNHYLLPTSPDEINISSAMQKRIAPFRTR 599
            FYWDDI+L GAVLLF G APMSCLAIRISRV DAF LREELC VFIGCSCCV     IQVLVELE+ S+TSALHVVVEVQALL+GMN G+SGLLLPMVRAHRGGV+AWFRA+                                                                           HILNHYLLPTSPDEINISSAM KRIAPFRTR
Sbjct:   69 FYWDDIMLMGAVLLF-GGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCCVAVLWVIQVLVELELLSDTSALHVVVEVQALLIGMNIGLSGLLLPMVRAHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285
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BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.040e-50
Identity = 119/262 (45.42%), Postives = 131/262 (50.00%), Query Frame = 3 
Query:  150 SWTLLQ*HAR-VFYWDDIILAGAVLLFCGAAPMSCLAIRISRVKDAFNLREELCCVFIGCSCC-----VIQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASA----------------------------------------------------------------------------------------------------------HILNHYLLPTSPDEINISSAMQKRIAPFRTR 599
            S++LL    R  FYWDDIIL G ++L  G  PMSCLAIRISRV DAF +REELC VFIGCSCC     VIQVLVEL++ S+TSALHVVV+VQALL+GMN GISGLLLPMVR HRGGV+AWFRA+                                                                                                           HILNHYLLPTSPDEINISSAM KRIAPFRTR
Sbjct:  183 SYSLLCSDMRECFYWDDIILVGVMILSSGP-PMSCLAIRISRVNDAFKIREELCFVFIGCSCCAAVLWVIQVLVELDLLSDTSALHVVVQVQALLIGMNIGISGLLLPMVRTHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443
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BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.260e-45
Identity = 89/144 (61.81%), Postives = 103/144 (71.53%), Query Frame = 3 
Query:  183 FYWDDIILAGAVLLFCGAAPMSCLAIRISRVKDAFNLREELCCVFIGCS-----CCVIQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASAHILNHYLLPTSPDEINISSAMQKRIAPFRTR 599
            FYWDDI + G  L+F G AP+S L IRISRV DAF LREELC   +GCS       VIQVLVELE+W +T ALHVVVEV  LL+GMN+G  GLLLPM+ +     +  F +  +ILN YLLPTSPDEINISSAM K +A FRTR
Sbjct:   62 FYWDDIFVVGIGLIF-GGAPVSLLVIRISRVNDAFQLREELCRTIMGCSGIAVILWVIQVLVELEVWPDTPALHVVVEVLILLLGMNAGYWGLLLPMMSSP----EEQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.090e-13
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 IRAVRLVIACNRKYRLKYARFAKRNYALGFWAVACIGLTIRAGVFFGTDPGHYSS 168
            IRAVRLVIA NRKYRLKYA+F KR +A G   +  I LTIRAG+FFG DP HYSS
Sbjct:    5 IRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
RGS5.380e-6155.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS1.040e-5045.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized5.260e-4561.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RGS1.090e-1370.91domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1030contigEcto-sp9_F_contig1030:12939..15451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size599
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1030.310.1prot_Ecto-sp9_F_contig1030.310.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1030 12939..14641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.4505587-CDS-Ecto-sp9_F_contig1030:12938..130311622928231.4505587-CDS-Ecto-sp9_F_contig1030:12938..13031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 12939..13031 -
1692277803.8139997-CDS-Ecto-sp9_F_contig1030:12938..130311692277803.8139997-CDS-Ecto-sp9_F_contig1030:12938..13031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 12939..13031 -
1622928231.4726758-CDS-Ecto-sp9_F_contig1030:13610..136741622928231.4726758-CDS-Ecto-sp9_F_contig1030:13610..13674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 13611..13674 -
1692277803.8228962-CDS-Ecto-sp9_F_contig1030:13610..136741692277803.8228962-CDS-Ecto-sp9_F_contig1030:13610..13674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 13611..13674 -
1622928231.4843922-CDS-Ecto-sp9_F_contig1030:14002..141091622928231.4843922-CDS-Ecto-sp9_F_contig1030:14002..14109Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 14003..14109 -
1692277803.833534-CDS-Ecto-sp9_F_contig1030:14002..141091692277803.833534-CDS-Ecto-sp9_F_contig1030:14002..14109Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 14003..14109 -
1622928231.4950676-CDS-Ecto-sp9_F_contig1030:14548..146411622928231.4950676-CDS-Ecto-sp9_F_contig1030:14548..14641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 14549..14641 -
1692277803.84282-CDS-Ecto-sp9_F_contig1030:14548..146411692277803.84282-CDS-Ecto-sp9_F_contig1030:14548..14641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 14549..14641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.511072-UTR-Ecto-sp9_F_contig1030:14641..147161622928231.511072-UTR-Ecto-sp9_F_contig1030:14641..14716Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1030 14642..14716 -
1692277803.8507059-UTR-Ecto-sp9_F_contig1030:14641..147161692277803.8507059-UTR-Ecto-sp9_F_contig1030:14641..14716Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1030 14642..14716 -
1622928231.5224218-UTR-Ecto-sp9_F_contig1030:15284..154511622928231.5224218-UTR-Ecto-sp9_F_contig1030:15284..15451Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1030 15285..15451 -
1692277803.8600428-UTR-Ecto-sp9_F_contig1030:15284..154511692277803.8600428-UTR-Ecto-sp9_F_contig1030:15284..15451Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1030 15285..15451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1030.310.1

>prot_Ecto-sp9_F_contig1030.310.1 ID=prot_Ecto-sp9_F_contig1030.310.1|Name=mRNA_Ecto-sp9_F_contig1030.310.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MSCLAIRISRVKDAFNLREELCCVFIGCSCCVIQVLVELEIWSNTSALHV
VVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASAHILNHYLLPTSP
DEINISSAMQKRIAPFRTR
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mRNA from alignment at Ecto-sp9_F_contig1030:12939..15451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1030.310.1 ID=mRNA_Ecto-sp9_F_contig1030.310.1|Name=mRNA_Ecto-sp9_F_contig1030.310.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2513bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:12939..15451- (Ectocarpus species9 EcSCA_722f female)
GTGATTCGGGCCGTGCGATTGGTGATCGCGTGCAATCGCAAATATCGGCT
CAAGTACGCCAGATTCGCGAAGAGAAATTATGCTTTGGGCTTCTGGGCCG
TGGCCTGCATTGGGCTCACCATCCGAGCCGGGGTATTCTTCGGGACCGAT
CCTGGACACTACTCCAGGTGACAACCAAAGACACAGCTTGAAGCCTGCCA
GAGCGGATGGCTCGTACAAGGCCGAATGTGATTATAGAGTACGTGTAGCT
TGTGAAATCGACGAACTGCTGAACATTGAATGTTTCCGACGTCCGTCCAC
CAATCATTTCAGATCACGGCACGGCAGTAAAAGAACAAATGGGAACTATG
TACGTAAGGGTCAACGCTCATTCCAGGTTGAGAACCGAACGCTTGATCCT
TCGAATTGTCGGTTCCATGGGCAGGTGCAGGTGTCACGCAAGCGTTGGGG
TCACGCTTTCGAACGTTTAGATAGACCAGCAAGGTGGCGTAGCATTTCAT
TGCTACCGTAGCCTTGGAAGAAGTGCGCTGCCAAGCGTTTGCCCCATCAT
CCTTCTCTTTCGCCTCGACGAGTATGCACCAATGCATCCCACTTTCGATA
AACGCGTAAGCACGGTCGGTCATGGTAGCGGAGACCTGTCAATCGAGCGC
AACATGAAAACGAGTGTTGGGGGTACACTTCTCCTCCGATCTCTTCGACC
TCCCGGCTCAACTGCTCTTATTCTCTGCTCTGCAGTGACATGCGAGAGTG
TTCTACTGGGACGACATCATTCTCGCGGGAGCAGTACTACTCTTTTGTGG
CGCAGCGCCGATGTCGTGTTTGGCCATACGTATATCGCGAGTGAAGGACG
CCTTCAACCTTCGTGAGGAATTGTGTTGTGTGTTCATCGGCTGCTCCTGC
TGCGTAGGTGAGGGAAAAATAGCTATCTAAACTTTATACAAAGCTATGTT
AGCTCTTCCATTTTGCACTCTAGGCCCTCTCTCGGAAGGCTTGCCGACAC
CAGTCAAGAGTAAGGTAAGCGTCCTGATGCAGAGGGCAGGATATATGAGA
CGAATAATGTTTTCCGTCAGTGGTACGAGTTCTGAGATGCAAACACAGGT
CTTGTTTCATCGTTGTCATACGTGTCATACACCATTATCACGCCCCCAGG
GCGTACAGAGGAAGTTTGCGGTCAAGTTGCGGCCATCCTCTGCTTGCCGT
GCGTCATGCACGATTAGAGCCAAGACTGACGGATTCTGGAATAGCAATAT
TCACCTACGATGATGATACGTTGGACCCGCCAATTAACACGCCACGCTGT
CCCTGGACCTCTGTCTCTGCATTATACGTAGCTGTACTGTAGGTGATCCA
GGTGCTGGTGGAACTGGAAATATGGTCCAATACATCCGCACTTCACGTTG
TGGTCGAAGTGCAAGCGCTCCTGGTGGGGATGAACAGTGGAATTTCGGGG
TGAGACACAGTTCATTGTCGCTGTCGGTAGTTATCATGCCTCGAACAGGT
TGATTCGCCTGAGAATCAGGCACATTCGCTTAGCCTTTGCGTCCGCGCCG
ACAGAATAGGGTTTGGCTTCCAAGCGGAACGTGATACAGGCCCGTGCTAT
GTAGTCAGCCCTCCCCCCTCTTGGCAAGGACGTATAACAGGGCGTGGTTT
TGTCCGGGGAGACCTGTTTCTCTCACGTGCCGCATGCATGAAGCCACAAT
GAAAGCCAAGGCAATGCTCCACCATTTGGCCGCCCGCGCGAATCTTGCTT
AATGTATTGGCTGTCGCATCGACGCAGCTTGCTCCTTCCCATGGTGAGAG
CCCACCGTGGTGGGGTGCAGGCATGGTTCAGGGCCTCTGCGGTTCCTGTC
GAAGAGACGGTTGCGCGTCAGCGTTGGATGTGGATGGCGTGGTAGGGCTG
GCAAGCAGTGGCGGAGAAATTGCTGAGCAGTTTGAAAATTTCTGCCAAGA
GAGCTTGTGCATGGAAAGCTGGGATTTCCCCGTCGACGTTGTCCGCTACG
AACGCATGGCGCCAAGCCTCGTAAGCAAGCCTCGTAAGTACATGTACAGC
CAAATACAGAACATGACATTTGATGATGCTCCCTTGACATACCCAGTGTC
GCACAAAAACCTTAGGTCTCCGCATGCGTACGGAAAGGGCGACACCATAC
ATCATGGATATCAGGTTGGTAAGATTGACATGAGGCAAGAATCGATAGAT
GATTCCACTCCGGGGAATTTGTTGTACATACATAGGGTCGAGACTTGAAA
ACGTCGCCAACAGAGCAATTGTCTGCTATCGGGCGGGATTTGATACCCCT
CTGGTCGTGTTTGTGGAATTTTTCTCACCCCAACGGGCTCACCTCGTTTG
CGCGCTGTGTCGTGAAAATATATTGCAGATCGCGAGAAGCCCTGAGGACG
GGCAGTTCAACTGCTTCTAGCACATCCTGAACCATTACCTGCTTCCCACG
TCACCCGACGAGATAAACATATCCAGCGCAATGCAAAAACGCATCGCGCC
ATTCAGAACAAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1030:12939..15451-

>mRNA_Ecto-sp9_F_contig1030.310.1 ID=mRNA_Ecto-sp9_F_contig1030.310.1|Name=mRNA_Ecto-sp9_F_contig1030.310.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:12939..15451- (Ectocarpus species9 EcSCA_722f female)
ATGTCGTGTTTGGCCATACGTATATCGCGAGTGAAGGACGCCTTCAACCT
TCGTGAGGAATTGTGTTGTGTGTTCATCGGCTGCTCCTGCTGCATGTCGT
GTTTGGCCATACGTATATCGCGAGTGAAGGACGCCTTCAACCTTCGTGAG
GAATTGTGTTGTGTGTTCATCGGCTGCTCCTGCTGCGTGATCCAGGTGCT
GGTGGAACTGGAAATATGGTCCAATACATCCGCACTTCACGTTGTGGTCG
AAGTGCAAGCGCTCCTGGTGGGGATGAACAGTGGAATTTCGGGGTGATCC
AGGTGCTGGTGGAACTGGAAATATGGTCCAATACATCCGCACTTCACGTT
GTGGTCGAAGTGCAAGCGCTCCTGGTGGGGATGAACAGTGGAATTTCGGG
CTTGCTCCTTCCCATGGTGAGAGCCCACCGTGGTGGGGTGCAGGCATGGT
TCAGGGCCTCTGCGCTTGCTCCTTCCCATGGTGAGAGCCCACCGTGGTGG
GGTGCAGGCATGGTTCAGGGCCTCTGCGCACATCCTGAACCATTACCTGC
TTCCCACGTCACCCGACGAGATAAACATATCCAGCGCAATGCAAAAACGC
ATCGCGCCATTCAGAACAAGGCACATCCTGAACCATTACCTGCTTCCCAC
GTCACCCGACGAGATAAACATATCCAGCGCAATGCAAAAACGCATCGCGC
CATTCAGAACAAGG
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