mRNA_Ecto-sp9_F_contig10270.285.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10270.285.1
Unique NamemRNA_Ecto-sp9_F_contig10270.285.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.100e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 
Query:    2 SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCHDQ 274
            SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCHDQ
Sbjct:  106 SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCHDQ 196
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Aste57867_24505 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQN6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.830e-20
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            GCVNRLCWN +GT +ASGSDDT V L+D  +       +TGH  NI  V F+P TND I+ +G MD EVRLH  PF  PE ++  + H
Sbjct:   50 GCVNRLCWNQSGTTLASGSDDTRVILWDYNTRTARHVIETGHSMNIFGVCFVPGTNDHIVASGGMDCEVRLHFGPFR-PEGSKLVATH 136
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: WD (and tetratricopeptide repeats protein 1-like isoform X1 n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EE57CDE)

HSP 1 Score: 90.9 bits (224), Expect = 2.380e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            GCVN L WN+ GTR+ASGSDD  V ++D    +     +TGH+ NI SVKFLP  ND I+VTGA D ++R+H    +  + T+ FSCH
Sbjct:   48 GCVNCLEWNEDGTRLASGSDDVQVIIWDPFHHRSQTTVRTGHQGNIFSVKFLPNCNDSIVVTGAADCKIRVHD--LNLKDTTQVFSCH 133
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BVZ8_LOTGI)

HSP 1 Score: 90.1 bits (222), Expect = 4.400e-19
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            GCVN L WN+ GT +ASGSDD  + ++DA   K+    +TGH+ NI +VKFLP +ND ILV+GA D ++R+H    +  + T  +SCH
Sbjct:   51 GCVNCLEWNEKGTLLASGSDDVQIMIWDAFRHKQVTSLRTGHQGNIFAVKFLPNSNDTILVSGAADSKIRVHD--INMKDTTHVYSCH 136
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Hypothetical (protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E4J1_9CRYP)

HSP 1 Score: 90.1 bits (222), Expect = 4.450e-19
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:    2 SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            +GCVNRLCWND GT++AS SDD    L+D  +    V+  TGH RNI  V F+P +ND  +VTGAMD +VRLHK         E +S H
Sbjct:   46 TGCVNRLCWNDTGTKLASVSDDCKCILWDV-NRHTHVEISTGHERNIFGVAFIPESNDSWIVTGAMDYQVRLHKVSPDGGYNCELYSHH 133
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7T1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.490e-19
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPF 232
            GCVNRLCWN  GT +ASGSDDT V L+D    K      TGH  NI  V F+P TND I+ +  MD EVRLH APF
Sbjct:  276 GCVNRLCWNQQGTILASGSDDTRVVLWDYQRRKPRHVITTGHSMNIFGVAFVPGTNDHIVASAGMDCEVRLHYAPF 351
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: Uncharacterized (protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FYF0_HELRO)

HSP 1 Score: 89.7 bits (221), Expect = 6.010e-19
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            GCVN L WN+ G  +ASGSDD  V ++DA   KR    ++GHR NI SVKFLP TND ++++GA D E+R+H      P      SCH
Sbjct:   26 GCVNCLSWNENGRLLASGSDDVQVIIWDALRHKRLTSLRSGHRGNIFSVKFLPHTNDNVVISGAADCEIRVHDVTTKDP--IHVISCH 111
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: WD (and tetratricopeptide repeats protein 1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A42D7)

HSP 1 Score: 89.4 bits (220), Expect = 8.200e-19
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:    2 SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLH 220
            SGCVN L WND GT +ASGSDDT V L+DA   K      T H  NI +VKF+PC+ND ++ TGA DG + LH
Sbjct:   46 SGCVNCLDWNDEGTLLASGSDDTKVILWDAYQHKNIQMLNTQHHGNIFTVKFIPCSNDHVIATGAADGHIFLH 118
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BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: WD (and tetratricopeptide repeats protein 1-like n=4 Tax=Crassostrea TaxID=6564 RepID=A0A8B8AS21_CRAVI)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-18
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 2 
Query:    5 GCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            GCVN L WN+ GT +ASGSDD  V L+D    +      TGH+ NI SVKFLP TND ILVTGA D ++R++    +  E +  FSCH
Sbjct:   49 GCVNCLEWNERGTLLASGSDDLNVILWDPLRHRTKATINTGHQGNIFSVKFLPNTNDSILVTGAADCKIRVYDT--NREENSHVFSCH 134
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Match: WD (and tetratricopeptide repeats protein 1-like n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI00130419D6)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-18
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 2 
Query:    2 SGCVNRLCWNDAGTRIASGSDDTTVCLFDAASGKRDVQFQTGHRRNILSVKFLPCTNDQILVTGAMDGEVRLHKAPFSSPELTECFSCH 268
            +GCVN L WN++G  +AS SDD  V L+D    K+ +  QTGH  NI SVKF+P +ND ILV+GA DGEVR+H    S P L  C +CH
Sbjct:   52 AGCVNCLEWNESGQILASASDDMYVILWDPFRYKKKLVLQTGHDGNIFSVKFMPKSNDSILVSGAGDGEVRVHDLTLSEPILI-C-NCH 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10270.285.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.100e-56100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3... [more]
Aste57867_245056.830e-2052.27protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
WD2.380e-1950.00and tetratricopeptide repeats protein 1-like isofo... [more]
Uncharacterized4.400e-1947.73protein (Fragment) n=1 Tax=Lottia gigantea TaxID=2... [more]
Hypothetical4.450e-1950.56protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]
Uncharacterized4.490e-1957.89protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Uncharacterized6.010e-1948.86protein n=1 Tax=Helobdella robusta TaxID=6412 RepI... [more]
WD8.200e-1956.16and tetratricopeptide repeats protein 1-like n=1 T... [more]
WD1.130e-1851.14and tetratricopeptide repeats protein 1-like n=4 T... [more]
WD1.530e-1852.81and tetratricopeptide repeats protein 1-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10270contigEcto-sp9_F_contig10270:979..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928224.411763-CDS-Ecto-sp9_F_contig10270:978..11561622928224.411763-CDS-Ecto-sp9_F_contig10270:978..1156Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10270 979..1156 +
1692277802.0735223-CDS-Ecto-sp9_F_contig10270:978..11561692277802.0735223-CDS-Ecto-sp9_F_contig10270:978..1156Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10270 979..1156 +
1622928224.4263978-CDS-Ecto-sp9_F_contig10270:2385..24831622928224.4263978-CDS-Ecto-sp9_F_contig10270:2385..2483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10270 2386..2483 +
1692277802.0809493-CDS-Ecto-sp9_F_contig10270:2385..24831692277802.0809493-CDS-Ecto-sp9_F_contig10270:2385..2483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10270 2386..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10270.285.1prot_Ecto-sp9_F_contig10270.285.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10270 979..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10270.285.1

>prot_Ecto-sp9_F_contig10270.285.1 ID=prot_Ecto-sp9_F_contig10270.285.1|Name=mRNA_Ecto-sp9_F_contig10270.285.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
FRVRQPAVLERRRHADRLRLRRHDCLPLRRGFGQARRAVSDRSPEEYLER
EVSSLHKRPDIGHRSHGWGGPSSQGALLFARADRVLLVPRPT
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mRNA from alignment at Ecto-sp9_F_contig10270:979..2483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10270.285.1 ID=mRNA_Ecto-sp9_F_contig10270.285.1|Name=mRNA_Ecto-sp9_F_contig10270.285.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1505bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10270:979..2483+ (Ectocarpus species9 EcSCA_722f female)
TTCAGGGTGCGTCAACCGGCTGTGCTGGAACGACGCCGGCACGCGGATCG
CCTCCGGCTCCGACGACACGACTGTCTGCCTCTTCGACGCGGCTTCGGGC
AAGCGAGACGTGCAGTTTCAGACCGGTCACCGGAGGAATATCTTGAGCGT
GAAGTTTCTTCCTTGCACAAACGACCAGGTAGAGCTACAACAACACTGCC
GTGGACGCGACTCAGTGAGGCACAGCAGGTTTCGTAAGATAACATCCCCC
CCCCCCCCCCCGACCGCTTTTCACTGCCCGATTTACTCTGCAGCAGTAGC
AGCAGAAGTGACGGTGTCGAGAAGAGCGGCGTTATTAGTGTCTCGTCGAG
GCCTTTTTTCCGAAACCGCATCAATTTGTTTTAGTCGTGCGCTTTTCTTT
GTGGGTTAATCGAGCTTCGAAATCGGTCCAGGGGGTGTGGCATCTGATGC
GACGTAGGGGTACTTTTGTCCACCCACACTCATGTCGCGGGTGCACCAAG
TATTGGTTTGACGAAGGGGAGGGAGAGAGCAAACGCACGGCGGTAGATAT
GCCCTGTCAGAGCAAAATCACACCAGGAGGACGTCGGTTGTTTGTTAGCG
TGTGTATCGTTTTTTCCCTCCTTTTATCCTCTCCCTCTATCTCAAGCCTC
CGGCCGCAAGCCATGCAAGTTTCCCGCGGGGAGGAATCATGCTCCTCGAC
TCTTCCGTGGCTATCTGAATCTCATCGCGCGCAATTAGTGCCCGGCCACA
GCGCTTTTTTGCGGTCCTGGGAAGGTAGATGTTTTGGGATTTGAGTACAA
GGACCTCAGCGGTTGTTCTAGGTTACACTTGTAGGCTTGGCGGGGAAATT
GCAACTCCCTGGGAAGCTGTTCCTTCAGATTCTCCGACAAGCTAATCTAC
GTCAGGGTCTTCAGGGATAGCTACGTGTGTGCACCTCACAATAGAGCTGG
GTGGATGTGATTGTGGGTGCTACAGTAGCGCTGCCCCCTTTCCTGCGACG
TCCTTTCGCTGTTTGCTGTCGAACGCTGGGGATGCGAAAATCGCACGGCA
CGGCGCGTTACCCCCCGGGGCTATCGTCGGAGCACGCTGAACCCAGACGA
TCAACAGTCTACATTGCGTATGCAGACAACGAGATAGCGCTACGTTTCCT
CGCCTTGGTGCTGAGGAGGCAATTTCGATGCTCAGAATCGCGGCTTGCTT
CAGCGGAACCCTTGATATCTGTTCGTATTCACATACAAGGAGAGCGGTTT
GGCAGCGTGACAGAGAACTCCTAGAGATGGGATAGGAAATACCTTTGAGG
CATGACGGAGTCACGGCGTCGGAAACATGGGATGACCCCCCCCCCCCCCC
CATCCCCGCACGTCTGCATGGCGGGATGATGATCGATGTCGCCTTCTCTC
ACGACAGATATTGGTCACCGGAGCCATGGATGGGGAGGTCCGTCTTCACA
AGGCGCCCTTCTCTTCGCCCGAGCTGACCGAGTGCTTCTCGTGCCACGAC
CAACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10270:979..2483+

>mRNA_Ecto-sp9_F_contig10270.285.1 ID=mRNA_Ecto-sp9_F_contig10270.285.1|Name=mRNA_Ecto-sp9_F_contig10270.285.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10270:979..2483+ (Ectocarpus species9 EcSCA_722f female)
TTCAGGGTGCGTCAACCGGCTGTGCTGGAACGACGCCGGCACGCGGATCG
CCTCCGGCTCCGACGACACGACTGTCTGCCTCTTCGACGCGGCTTCGGGC
AAGCGAGACGTGCAGTTTCAGACCGGTCACCGGAGGAATATCTTGAGCGT
GAAGTTTCTTCCTTGCACAAACGACCAGTTCAGGGTGCGTCAACCGGCTG
TGCTGGAACGACGCCGGCACGCGGATCGCCTCCGGCTCCGACGACACGAC
TGTCTGCCTCTTCGACGCGGCTTCGGGCAAGCGAGACGTGCAGTTTCAGA
CCGGTCACCGGAGGAATATCTTGAGCGTGAAGTTTCTTCCTTGCACAAAC
GACCAGATATTGGTCACCGGAGCCATGGATGGGGAGGTCCGTCTTCACAA
GGCGCCCTTCTCTTCGCCCGAGCTGACCGAGTGCTTCTCGTGCCACGACC
AACGATATTGGTCACCGGAGCCATGGATGGGGAGGTCCGTCTTCACAAGG
CGCCCTTCTCTTCGCCCGAGCTGACCGAGTGCTTCTCGTGCCACGACCAA
CG
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