mRNA_Ecto-sp9_F_contig1027.280.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1027.280.1
Unique NamemRNA_Ecto-sp9_F_contig1027.280.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 2.130e-81
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:    1 MTSTAARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGE 354
            MTSTAARQV RGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGE
Sbjct:    1 MTSTAARQVARGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGE 118
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.840e-29
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   55 PPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEG 339
            PP AR      +L E  EL+WDD VAPE  +DFDAPH+S ++   WW GGL FFA +  +V LS PE +REA+PR AT+P  AFDP DLF  + G
Sbjct:   32 PPMARQPRPTQRLHEEQELMWDDSVAPELCLDFDAPHISRTQGLLWWLGGLGFFAAVFNIVKLSYPEGRREALPRTATMPPAAFDPVDLFTGKRG 126
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P129_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.730e-25
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   13 AARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATL 291
            AA+Q    G  PP PPFARN     +L E+HEL+WDDGVAPE TIDFD+ H+S  E  AWW GGL FF G+       D ESK  AV R A +
Sbjct:   21 AAQQARSLGSSPPTPPFARNLAPTTKLVEDHELVWDDGVAPELTIDFDSQHISTGEGLAWWLGGLGFFTGLFQFCKTIDMESKNPAVNRKADI 113
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZR7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.040e-24
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   13 AARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPR 279
            A R +  GG  PP PPFARN     +L E+HEL+WDDGVAPE TIDFD PH S  +  A W GG+ FF  +  +V L+DP SK  A PR
Sbjct:   35 AVRCMGGGGATPPLPPFARNLAPQEKLHESHELMWDDGVAPELTIDFDVPHYSGEKGLAMWLGGIAFFVTLYQVVKLTDPASKNPAAPR 123
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R2X0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.640e-22
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   52 QPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 294
            +PPF R       L E HEL+WDDGVA ET IDFDAPH+S SE FAWW GG  FF G+  +  L DP+++    PR  T+P
Sbjct:   44 RPPFIRTLAPQGSLHEEHELVWDDGVAAETCIDFDAPHISSSEGFAWWIGGFLFFLGVGTVALLRDPDAQNPTTPRGPTMP 124
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRF0_NANGC)

HSP 1 Score: 94.0 bits (232), Expect = 6.620e-22
Identity = 49/98 (50.00%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   19 RQVIRGGGG------PPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 294
            R  +R GGG      PP  PF R    +  L E HELIWDD VA E  IDFDA  +   EAF WW GG  FF G+LGLV L+DP S    V +A T+P
Sbjct:   28 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALTDPASVNPCVNKAETMP 125
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHV7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-21
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 MTSTAARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATL 291
            + + + +  +RG   PP PPFAR      +L EN++ +WDDGVAPET +DFD  H+S  E  AWW GGL FF  +   V  +DPESK  AV R   +
Sbjct:   39 VATRSTQSSLRGDYTPPLPPFARIPAPTEKLVENNDAVWDDGVAPETALDFDCQHISSEEGLAWWLGGLGFFFSVYQFVKWTDPESKNPAVNRKMNM 135
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWZ0_THAPS)

HSP 1 Score: 92.4 bits (228), Expect = 2.150e-21
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    4 TSTAARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPR 279
            T+TA   + RGG  PP  PFAR  P   +L E ++ IWDDGVAPE T+DFD  H+S  E  A W GGL FFA +  +V  SDP+SK  AV R
Sbjct:   33 TTTA---LTRGGATPPLAPFARLPPESEKLVEQYDAIWDDGVAPEVTLDFDCQHISSGEGLAMWLGGLGFFATLYQVVKASDPQSKNPAVNR 121
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BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8H2_HYAAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.040e-20
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:   25 VIRGGGG--PPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGED 357
             +RGG    PP PPFAR K     L E  EL+W+DGV+PET IDFDAPH+   +A   W  GL FF  ++G+VTL  P+S R+AV R   LP   ++  ++ + E GE  G D
Sbjct:   11 AVRGGHAHRPPPPPFARLKAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQALRHWLCGLGFFVTLMGVVTLYGPDSWRQAVKRETCLPDLKWELGEIDEPE-GEMKGID 122
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Match: Uncharacterized (protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZU03_PHYSP)

HSP 1 Score: 89.0 bits (219), Expect = 4.050e-20
Identity = 48/102 (47.06%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 MTSTAARQVIRGGGG----PPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 294
            ++    RQ +   GG    PP PPFAR K     L E  EL+W+DGVAPET IDFDAPH+   +A   W  GL  FA ++G+VTL +P+S R+A  R   LP
Sbjct:   14 LSVNVRRQALATRGGHAHRPPPPPFARIKEAAAPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSWRQASKRGNHLP 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1027.280.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.130e-8199.15protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6... [more]
Uncharacterized7.840e-2953.68protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.730e-2553.76protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical6.040e-2453.93protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical1.640e-2253.09protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized6.620e-2250.00protein n=1 Tax=Nannochloropsis gaditana (strain C... [more]
Hypothetical1.400e-2145.36protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Uncharacterized2.150e-2152.17protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Uncharacterized2.040e-2046.02protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized4.050e-2047.06protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4Z... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1027contigEcto-sp9_F_contig1027:8630..10742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue3.1e-63
Seed eggNOG ortholog2880.D8LGL6
EggNOG OGs2CYNQ@1,2S5CD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002670.1
Exons2
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928223.7438731-CDS-Ecto-sp9_F_contig1027:8629..89381622928223.7438731-CDS-Ecto-sp9_F_contig1027:8629..8938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 8630..8938 -
1692277801.8304477-CDS-Ecto-sp9_F_contig1027:8629..89381692277801.8304477-CDS-Ecto-sp9_F_contig1027:8629..8938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 8630..8938 -
1622928223.7651489-CDS-Ecto-sp9_F_contig1027:10652..107421622928223.7651489-CDS-Ecto-sp9_F_contig1027:10652..10742Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 10653..10742 -
1692277801.8414035-CDS-Ecto-sp9_F_contig1027:10652..107421692277801.8414035-CDS-Ecto-sp9_F_contig1027:10652..10742Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 10653..10742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1027.280.1prot_Ecto-sp9_F_contig1027.280.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1027 8630..10742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1027.280.1

>prot_Ecto-sp9_F_contig1027.280.1 ID=prot_Ecto-sp9_F_contig1027.280.1|Name=mRNA_Ecto-sp9_F_contig1027.280.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
MTSTAARQVIRGGGGPPQPPFARNKPVDYQLDENHELIWDDGVAPETTID
FDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPAT
AFDPRDLFKAEEGEAAGEDEEEEEEEEEEEDE*
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mRNA from alignment at Ecto-sp9_F_contig1027:8630..10742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1027.280.1 ID=mRNA_Ecto-sp9_F_contig1027.280.1|Name=mRNA_Ecto-sp9_F_contig1027.280.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2113bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:8630..10742- (Ectocarpus species9 EcSCA_722f female)
ATGACGTCGACAGCCGCGAGGCAGGTGATTCGGGGTGGGGGAGGGCCGCC
GCAGCCGCCTTTCGCACGAAACAAGCCGGTCGACTATCAGGTATGCTCTC
AATTGACCTGGTGTCCCTCGTTGTGTCTCACTCTTTCCCAAGAGGTGGTA
CTACAGTAAGTTGTGTCGACAGCAGCATCTAAAGGTTAAACGTCTGTCTT
GTTCGCGGCAAAGCAAGGCAACGATGATGCGCAATCAGCCGGAATGTTCA
TTTCTACATATCTCGAAAAGGTGCGGCATCTCTTGTGCGCAAAAATTCAG
CACCTCCGCCCAGGACGTTCGCGATTGTACGGGACCTAAGAGGTGTGCAC
GTGTGCACTCATTGTTGTCATGCATTTGCATAGGTGTGCACTCACATGCT
GTATGCCGATGATGCAGGACTCCATTAATCAAACGCGTTTAGCACTCGGC
TAACCCATTCGCATGCTCTCTCCAGCAAGAGTATTTAATCCGTATGTGTG
TACTATATGGTATGCATGCATCTAACGCTTGTCTTTTTCATGACGAACAA
AGCTAAGGTGGATTTGACAGCTATGTTGCTCGTCGTCTGTGTGTCTAGAA
AATGCTGCAGACACATGATGATGGACTCCACTCGTGCCGTGCGTAGACCA
TAGTAGAGAACTGTCGCCAGAGTCTCCTCCGATGGCCGGTTCCTACGTAG
TTGATTTGGTTTTTGGTGCAGAGCTTTTTCATGAATGTTCCCGTGAACGG
ACTGCGGTCTCAGCTCCGATTTGCCCCAGAGCACCACGACGGATGTATGC
CACGAGACCCACCGTCGCTCACATGCTCACACCTTCCAATCAATGCAAAC
CATCAAAGTGTAACTCATGGGGCAACATACCACGACACTATTATAGCACA
TTTTGTTGCACATGCAACAATAGAAAAATATGCCTGCAAGCGATCAAAGT
GGAGAGAGATGTAGCACCTTCCGCCAAAACCCTCACCGTGATCGTAGTTG
GGGTTACGGTAAAGGTAGGGTTTAGAGTCCATCGCCGGTGGGTTCAGGGT
ACAAAGATGCATTATTTACGTTTGCAAACCCACCCCATGTCCTTACACAT
GTCTACCTCCACAGAGAACCCACATCGCTACAGGCACATCTTATTTCTTG
CATGCGCAGGCAGATACCCGCCCGCTGCGCACATGGTTTGCCGTGGCTGT
CGGCATCAGGGTTATTAGATAAAGGCTGTCCCATTGGACTACCGAGCCAG
CGGGCTAGGTACTCTAATTGGGTTTGCCTTCACTTTATTACAGGTGGTGT
CTACACACACAACAACAGACAACAGTAGATCATTTTCTACCACGTATCGG
TGCGCATACTCTGTAGAGGGAGTGAGGAAGCTAGCTGAGACAAGCTAGGG
GTCACGACAGCGTTTCGAATGGGCGGGGCGGGGTACATCGGGCATGCCTT
GTTGTCCTTGTTCTTGTGCCTATGGTTTTCTAGACTCCGGCGTCCTGCCA
CATTGCTGTCCTCACTCCCAAACATCCCACGTGTGTATGTTCTCACGTTC
GGTGCTGTCCCGTGCTGGCTGTTGTTTGACAATCCTCGCTGTCGGTCGCC
AAAGGCGCCCTCATGTCTCTCGAACTTCCACCTCATGCCGACCCCTCTTC
CTCCCCAACCCGTTTCCTCCTTGCCTGCAACCCCCCTTCCCGCCCGTCGT
CCCTACCCCAAACGTCTACTCAAAACCTGAACCGATGCCAACCGAAACGC
GACGACCGCATCTACGACGACCACCAAACTCGAACGGCGTGCTCTTCTTC
ACAGCTGGACGAGAACCACGAGCTGATCTGGGACGACGGCGTTGCGCCCG
AGACGACCATCGACTTCGACGCGCCGCACATGTCCATGTCGGAGGCGTTC
GCGTGGTGGGGCGGGGGGTTGACCTTTTTCGCGGGCATGCTGGGGCTGGT
CACCCTGAGCGACCCGGAGAGCAAGAGAGAGGCCGTCCCGCGGGCGGCCA
CGCTCCCCGCGACGGCGTTCGACCCGAGGGACCTGTTTAAGGCGGAGGAG
GGCGAGGCGGCCGGGGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGACGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1027:8630..10742-

>mRNA_Ecto-sp9_F_contig1027.280.1 ID=mRNA_Ecto-sp9_F_contig1027.280.1|Name=mRNA_Ecto-sp9_F_contig1027.280.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:8630..10742- (Ectocarpus species9 EcSCA_722f female)
ATGACGTCGACAGCCGCGAGGCAGGTGATTCGGGGTGGGGGAGGGCCGCC
GCAGCCGCCTTTCGCACGAAACAAGCCGGTCGACTATCAGATGACGTCGA
CAGCCGCGAGGCAGGTGATTCGGGGTGGGGGAGGGCCGCCGCAGCCGCCT
TTCGCACGAAACAAGCCGGTCGACTATCAGCTGGACGAGAACCACGAGCT
GATCTGGGACGACGGCGTTGCGCCCGAGACGACCATCGACTTCGACGCGC
CGCACATGTCCATGTCGGAGGCGTTCGCGTGGTGGGGCGGGGGGTTGACC
TTTTTCGCGGGCATGCTGGGGCTGGTCACCCTGAGCGACCCGGAGAGCAA
GAGAGAGGCCGTCCCGCGGGCGGCCACGCTCCCCGCGACGGCGTTCGACC
CGAGGGACCTGTTTAAGGCGGAGGAGGGCGAGGCGGCCGGGGAAGATGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGAGTGACTGGACGAGAA
CCACGAGCTGATCTGGGACGACGGCGTTGCGCCCGAGACGACCATCGACT
TCGACGCGCCGCACATGTCCATGTCGGAGGCGTTCGCGTGGTGGGGCGGG
GGGTTGACCTTTTTCGCGGGCATGCTGGGGCTGGTCACCCTGAGCGACCC
GGAGAGCAAGAGAGAGGCCGTCCCGCGGGCGGCCACGCTCCCCGCGACGG
CGTTCGACCCGAGGGACCTGTTTAAGGCGGAGGAGGGCGAGGCGGCCGGG
GAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGAGTGA
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