mRNA_Ecto-sp9_F_contig10264.277.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 4.440e-139 Identity = 202/220 (91.82%), Postives = 211/220 (95.91%), Query Frame = 3
Query: 231 EKKSAPPTAAIADPAAHDATIPV-HPALSLKVGEVLSGTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEAENKV 887
+K+ APPTAAIADP AH+ATIPV HPALSLKVGEVL+GTL+SPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETI TLVASDPGKVAKR AIRAELLAEEL+ER A+AEG +GKRGALATIAGWMPFGKGGFLRRR REHAK HMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWV+HSGVEITRNGMLDWSIEAENKV
Sbjct: 113 DKEPAPPTAAIADPVAHEATIPVVHPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDWSIEAENKV 332
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE) HSP 1 Score: 180 bits (456), Expect = 4.410e-50 Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 3
Query: 324 GEVLSGTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
G+VL LL+P S +AS DG+++ A A G PRDADG TGP + TL+ ++P K++K A+R+E + L ++ EG T + G LAT+ G+MPFGK GFLRRR REH +A+MGE L +TN+G L SVDG V RKSGP FG+R D SYEL VT +GV I+R GM DW ++A++
Sbjct: 234 GQVLLARLLNPARTSMAYASPTDGSVILATAIGNAPRDADGNTTGPVTQNNRTLLTANPRKMSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGLGVSVDGIVVLRKSGPYCFGFRRTDRSYELRVTEAGVVISRRGMYDWGLKAQD 419
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.820e-47 Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3
Query: 372 IFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
++A+ DG++VFA +TG PRD +GR TG P+ TL+A++ +AK R+E++ L ++ A EG T K+ ++T G++PFGK GFL RR R+ A+AH+GE L +T++G LE SVDGT V RK GPS+FG+R DPSYEL VT G+E++R G W ++AE+
Sbjct: 2 VYAAPADGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKGPSYFGFRRTDPSYELQVTEEGIEVSRRGDFVWGVKAED 171
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.560e-46 Identity = 85/151 (56.29%), Postives = 109/151 (72.19%), Query Frame = 3
Query: 429 PRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
PRDADG TGP P+ TL+ ++P K++K A+R+E +A L ++ A EG T +RG +AT+ G++PFGK GFLRRR REHA+AHMGE L +T +G LE SVDG V RKSGPSWFG+R D SYEL VT GV I+R GM DW I+A++
Sbjct: 339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDWGIKAQD 489
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB2_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.960e-46 Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 3
Query: 372 IFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGY-RTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
I+ S G++V A + G+ RD +GR GP P+ + T++ + +++K R+E+ A+ L A EG KR +A I G +PFGK GF RRREREHA+AH+ E L +TN+G+LE S+DGT V RKS PSWFG+ R KDPSY+L VT G+EI R G LDW I+AE+
Sbjct: 2 IYVSPNSGSVVHASSAGKATRDEEGRKIGPVPQKLKTVITPNEQQMSKIERNRSEIWAQRLERGKAAREGGELKRSKMAAITGVLPFGKNGFRRRREREHAEAHLMEATLKLTNKGNLEVSIDGTIVQRKSRPSWFGFLRRKDPSYKLLVTKEGIEIYRRGKLDWVIKAED 172
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB6_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.170e-45 Identity = 90/190 (47.37%), Postives = 122/190 (64.21%), Query Frame = 3
Query: 315 LKVGEVLSGTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGY-RTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
L+ G L G L+SP + I+ S ++V A + G+ RD +GR GP P+ + T++ + +++K R+E+ A+ L A EG KR +A I G +PFGK GF RRREREHA+AH+ E L +TNRG+LE S+DGT V RKS PSWFG+ R KDPSY+L VT G+EI R G LDW I+AE+
Sbjct: 431 LRAGRFLFGKLMSPGKKAMIYVSPNSSSVVHASSAGKATRDEEGRKIGPVPQKLKTVITPNEQQMSKIERNRSEIWAQRLERGKAAREGGELKRSKMAAITGVLPFGKNGFRRRREREHAEAHLMEATLKLTNRGNLEVSIDGTIVQRKSRPSWFGFLRRKDPSYKLLVTKEGIEIYRRGKLDWVIKAED 620
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC7_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.570e-44 Identity = 88/190 (46.32%), Postives = 121/190 (63.68%), Query Frame = 3
Query: 315 LKVGEVLSGTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGY-RTKDPSYELWVTHSGVEITRNGMLDWSIEAEN 881
L+ G L G L+SP + I+ S ++V A + G+ RD +GR GP P+ + T++ + +++K R+E+ A+ L A EG KR +A I G +PFGK GF RRREREHA+AH+ E L +TNRG+LE S+DGT V RKS PSWFG+ R KDPS+EL VT G+EI R G LDW ++ E+
Sbjct: 458 LRAGRFLFGKLMSPGKKAMIYVSPNSSSVVHASSAGKATRDEEGRKIGPVPQKLKTVITPNEQQMSKIERNRSEIWAQRLERGKAAREGGELKRSKMAAITGVLPFGKNGFRRRREREHAEAHLMEATLKLTNRGNLEVSIDGTIVQRKSRPSWFGFLRRKDPSFELRVTMEGIEIYRRGKLDWVVKVED 647
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.630e-44 Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 3
Query: 339 GTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHT-GKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEA 875
G LL+P S ++AS DG+++ A A G+ P D D +TG P L+ ++ K+ +R+E+ L +R A EG K G + T+ G++PFGK GF RR REHA+AHMGE L +T +G+LE +VDG V RKSGPSWFG+R D SYEL T G+ I+R G DWS++A
Sbjct: 2 GKLLNPAKTSMLYASPIDGSVIHATANGKAPHDKDDDMTGQVPHGKHVLLKANSRKMLNALGLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSYELRATEEGIVISRQGKFDWSVKA 181
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI) HSP 1 Score: 161 bits (407), Expect = 3.050e-42 Identity = 81/168 (48.21%), Postives = 110/168 (65.48%), Query Frame = 3
Query: 372 IFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEA 875
++A+ DG++V A ATG PP D + R P +T TL+ ++P +++ +RAE++AE A EG KR + T+ G++PFGK GF RRR RE A AH+GE L VTN+G LE SVDG+ V RKSGPSWFG+R KD +YE+ VT GV ++R G DW I+A
Sbjct: 314 VYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDWGIQA 481
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 3.460e-42 Identity = 89/192 (46.35%), Postives = 114/192 (59.38%), Query Frame = 3
Query: 300 HPALSLKVGEVLSGTLLSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVAKRHAIRAELLAEELYERMAEAEGHTGKRGALATIAGWMPFGKGGFLRRREREHAKAHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVTHSGVEITRNGMLDWSIEA 875
HP +LKVG+VL G L +P S +AS DG+++ A A G+ PRDADG TGP P+ TL+ ++P K++K A ++E + L ++ A EG T K GFLRRR RE A+AHMGE L++T +G LE SVDG V R SG SWF +R D SYEL V GV I R GM DW I+A
Sbjct: 220 HPDFALKVGQVLLGRLPNPARTSIAYASPTDGSVILATAIGKAPRDADGNTTGPVPQKNRTLLTANPRKMSKVRARQSENIVARLEKKRAALEGRT--------------LRKHGFLRRRAREQAEAHMGEATLFITKKGGLEVSVDGIVVLRMSGLSWFVFRRTDLSYELRVAEEGVVIFRRGMYDWGIKA 397 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10264.277.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10264.277.1 >prot_Ecto-sp9_F_contig10264.277.1 ID=prot_Ecto-sp9_F_contig10264.277.1|Name=mRNA_Ecto-sp9_F_contig10264.277.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=177bp MGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETIATLVASDPGKVback to top mRNA from alignment at Ecto-sp9_F_contig10264:1917..4148- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10264.277.1 ID=mRNA_Ecto-sp9_F_contig10264.277.1|Name=mRNA_Ecto-sp9_F_contig10264.277.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2232bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10264:1917..4148- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10264:1917..4148- >mRNA_Ecto-sp9_F_contig10264.277.1 ID=mRNA_Ecto-sp9_F_contig10264.277.1|Name=mRNA_Ecto-sp9_F_contig10264.277.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10264:1917..4148- (Ectocarpus species9 EcSCA_722f female)back to top |