mRNA_Ecto-sp9_F_contig1026.274.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1026.274.1
Unique NamemRNA_Ecto-sp9_F_contig1026.274.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Match: Ankyrin (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI)

HSP 1 Score: 607 bits (1566), Expect = 3.230e-216
Identity = 368/406 (90.64%), Postives = 369/406 (90.89%), Query Frame = 1 
Query:    1 MGAALGGSCGGRTKEAAGSQCDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVVEQLLSSGDGRAPPLGGASPSSSGMVQEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGNAMVVSILVDGGAELEARGNISNXXXXXXXXXXXXXXXXXRLLQHGADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLTDAPQDRLWRRRRLLPLLQWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 1218
            MGAALGGSCGGRTKE AGS+CDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGV EQLLSSGDGRAPPLGGASPSSSGMV EPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          XXXXXXXXXXXXXXXXX      ADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRML DAPQDRLWRRRRLLPLL WRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL
Sbjct:    1 MGAALGGSCGGRTKEVAGSECDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVAEQLLSSGDGRAPPLGGASPSSSGMVPEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLADAPQDRLWRRRRLLPLLHWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 406
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BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Match: Ankyrin (repeat domain-containing protein n=5 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A4S3GJR2_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 7.210e-7
Identity = 53/145 (36.55%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:  214 AASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVVEQLLSSG---DGRAPPLGGASPSSSGMVQEPPSLKWQASMEGPVLVPSVSLVKRTTLDA-RDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPL 636
            AA D   A V +LLA+G  + A D EG + L  A   GHA VV  LL++G   +GRA P    +P +            +A+M G   V    +    +  A R  S   P+ LAA CGH DVV++LL  GAD+   +   +SPL
Sbjct:   14 AAKDNRPAEVARLLASGVGVDAIDREGRSALDLAVQEGHADVVRLLLAAGADPEGRAGPYHELTPMT------------EAAMFGRAAVVEALIDAGVSTGAQRVRSPHVPLVLAATCGHPDVVELLLDRGADIEDRDFKGRSPL 146
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BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=M2UFG2_COCH5)

HSP 1 Score: 58.5 bits (140), Expect = 8.280e-6
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  229 NLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVVEQLLSSGDGRAPPLGGASPSSSGMVQEPPSLKWQASMEGP-VLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVS 606
            N+A V+ LLA  A + ARD E  TPL+ AS  GH  +VE LL  G               GM     + ++++S     + V  + L K+  +DARD+    P++ A+  GH  +V+ LL+ GADV+
Sbjct:  229 NIAVVKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEG------AEVNKQCKKGMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDYQMRTPLYFASEGGHLQLVEALLEEGADVN 349
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BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Match: Ankyrin (repeat domain-containing protein (Fragment) n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6FH02_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 8.400e-5
Identity = 58/192 (30.21%), Postives = 80/192 (41.67%), Query Frame = 1 
Query:  133 LRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVVEQLLSSGD-------------GRAPPLG-----------GASPSSSGMVQEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPL 636
            LR+++     +++ + W   L A   D+   G    V  LLA GA   A D EG+TPLH A+ +   GV   L  +G              G A   G           GA P   G   +P  L    + E       + L  +  +DARD  G   +H AA  GHA +V VLL  GAD    +G  ++PL
Sbjct:  288 LRALIERGVDLNAAQAWMTPLLAATRDS-WHGRPEAVMTLLANGADPRATDTEGNTPLHHAARSSDPGVAALLRDAGAEMDALNGEGVSXLGTACIAGNWRLARFLLERGAKPEPEG--GQPVLLAAAGTEEDDAAGVQLLLRHKARVDARDARGRSALHEAALAGHAGIVAVLLDAGADPHARDGDGRTPL 476
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BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Match: ankyrin (repeat-containing domain protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001D2DA1D0)

HSP 1 Score: 56.2 bits (134), Expect = 9.620e-5
Identity = 37/122 (30.33%), Postives = 55/122 (45.08%), Query Frame = 1 
Query:  286 LEGHTPLHRASVAGHAGVVEQLLSSGDGRAPPLGGASPSSSGMVQEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAA 651
            + GHTPLH A+ A   G+VE +L           G  PS   +  + P L           +P   +     +D R   G  P+H+AA  G  D+VQ LL+ GAD++  +    +P+H   A
Sbjct:  871 VSGHTPLHLAAFANKQGIVELIL-----------GNKPS---IESQTPVLGGNERSITATTIPRREMKTILDVDPRSPKGRTPLHIAAMNGKLDIVQALLESGADINACDDAGMAPIHYGVA 978
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1026.274.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Ankyrin3.230e-21690.64n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI[more]
Ankyrin7.210e-736.55repeat domain-containing protein n=5 Tax=unclassif... [more]
Uncharacterized8.280e-634.65protein (Fragment) n=2 Tax=Cochliobolus heterostro... [more]
Ankyrin8.400e-530.21repeat domain-containing protein (Fragment) n=1 Ta... [more]
ankyrin9.620e-530.33repeat-containing domain protein n=1 Tax=Truncatel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1026contigEcto-sp9_F_contig1026:5946..7422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score612.1
Seed ortholog evalue1.9e-172
Seed eggNOG ortholog2880.D7FTX7
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1221
Cds size1221
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928222.9025958-CDS-Ecto-sp9_F_contig1026:5945..59901622928222.9025958-CDS-Ecto-sp9_F_contig1026:5945..5990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1026 5946..5990 +
1692277801.4377165-CDS-Ecto-sp9_F_contig1026:5945..59901692277801.4377165-CDS-Ecto-sp9_F_contig1026:5945..5990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1026 5946..5990 +
1622928222.9175057-CDS-Ecto-sp9_F_contig1026:6246..74221622928222.9175057-CDS-Ecto-sp9_F_contig1026:6246..7422Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1026 6247..7422 +
1692277801.448641-CDS-Ecto-sp9_F_contig1026:6246..74221692277801.448641-CDS-Ecto-sp9_F_contig1026:6246..7422Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1026 6247..7422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1026.274.1prot_Ecto-sp9_F_contig1026.274.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1026 5946..7422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1026.274.1

>prot_Ecto-sp9_F_contig1026.274.1 ID=prot_Ecto-sp9_F_contig1026.274.1|Name=mRNA_Ecto-sp9_F_contig1026.274.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=407bp
MGAALGGSCGGRTKEAAGSQCDGPPPGEQPPELDAWIDHSTWPGLRSIVT
EAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHT
PLHRASVAGHAGVVEQLLSSGDGRAPPLGGASPSSSGMVQEPPSLKWQAS
MEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGAD
VSGSNGVAQSPLHTAAAGLDSGDCVRLLLDAGGDLKARDSAGRTPLHVAA
SAGNAMVVSILVDGGAELEARGNISNRTPLHEACASLDAGSVKRLLQHGA
DERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLTDAPQDRL
WRRRRLLPLLQWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMR
NIVSYL*
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mRNA from alignment at Ecto-sp9_F_contig1026:5946..7422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1026.274.1 ID=mRNA_Ecto-sp9_F_contig1026.274.1|Name=mRNA_Ecto-sp9_F_contig1026.274.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1477bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1026:5946..7422+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGGCAGCGCTAGGTGGATCATGCGGAGGGAGAACCAAAGAGGTGTG
TGATCAGTCAAGCAGTTCTAAATTCCGTGTTGCGGATGAATCCGCATCTC
CGGTGGTTTACGACAAGTGTACGCCGGTCGCAAAGGCTTCTTCCATGTGG
ACGCCACACAACAGCAGCGGTAGCGTGTGTAGTGCATTTCAAGTGATGGG
GCCAAATCCGATCAGCTGCAAGGAGCCCAAGCTGCGTAGACTTTCATAAC
CACCATCCCGCCGTTCATGTACGCGACAAATATTCCACTCCGCCGCAGCA
GGCTGCTGGGAGCCAGTGCGACGGACCTCCTCCAGGTGAACAACCGCCCG
AATTGGACGCGTGGATCGACCACAGCACCTGGCCAGGCTTACGCTCCATC
GTGACCGAGGCATACCAAATCTCAAGCCGCGAGCGCTGGTCCAAGTTCCT
GGGTGCGGGTCTGCTGGACGCGGCTTCGGACGGCAACCTCGCGGGCGTCA
GGCAGCTCCTGGCCGCCGGGGCCCCCCTCCATGCGCGTGACCTGGAAGGG
CACACTCCGCTTCACCGCGCTTCGGTGGCGGGACACGCAGGCGTGGTCGA
GCAGCTCCTCAGCAGCGGCGACGGCAGGGCACCACCCTTGGGCGGGGCAA
GCCCATCGTCCAGCGGGATGGTGCAGGAGCCGCCTAGCCTTAAGTGGCAG
GCCAGCATGGAAGGGCCCGTGCTGGTGCCCTCCGTGTCTCTGGTAAAACG
GACAACGCTGGATGCTCGCGATCACTCGGGCTCGTGCCCGATACACCTGG
CCGCGGCGTGCGGACACGCAGACGTCGTCCAGGTCCTGCTCCAGCATGGC
GCCGACGTCTCGGGCTCGAACGGCGTGGCGCAAAGCCCTCTCCACACAGC
GGCGGCCGGACTGGACTCCGGAGACTGCGTGCGCCTCCTGCTGGACGCGG
GAGGGGACTTGAAGGCGAGAGACAGTGCCGGCAGAACGCCTCTGCACGTC
GCTGCCTCCGCGGGGAACGCGATGGTTGTATCGATCTTGGTGGACGGCGG
CGCGGAACTGGAGGCCAGGGGGAACATCAGCAACCGCACGCCTCTGCACG
AGGCTTGCGCGAGCCTGGATGCGGGGAGCGTTAAGCGGTTGCTGCAGCAC
GGAGCGGACGAGCGCGCGGTAGACATCGATGACCTCACGCCGGAGAACAT
GGTTTGCGAGAGAATGACCGAAGAGCAGAAGGCGGCAGATCCTACAATCG
CTCCAGTTGGAGAAACCATTTGCCGCATGCTGACCGATGCACCCCAAGAC
AGGCTGTGGCGGCGTCGGCGACTGCTGCCGTTGCTGCAGTGGCGCCAGCC
ACCGCCCGCTTTCGACACGGGACCGGGTACAGCCGTTACCGTTGATGCCG
GGTCGGGTCAGTCCATCTTCGAGCTTGTGGTGTGCGAGGAAGAGGGCATC
ATGCGCAACATCGTGTCCTATTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1026:5946..7422+

>mRNA_Ecto-sp9_F_contig1026.274.1 ID=mRNA_Ecto-sp9_F_contig1026.274.1|Name=mRNA_Ecto-sp9_F_contig1026.274.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2442bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1026:5946..7422+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGGCAGCGCTAGGTGGATCATGCGGAGGGAGAACCAAAGAGATGGG
GGCAGCGCTAGGTGGATCATGCGGAGGGAGAACCAAAGAGGCTGCTGGGA
GCCAGTGCGACGGACCTCCTCCAGGTGAACAACCGCCCGAATTGGACGCG
TGGATCGACCACAGCACCTGGCCAGGCTTACGCTCCATCGTGACCGAGGC
ATACCAAATCTCAAGCCGCGAGCGCTGGTCCAAGTTCCTGGGTGCGGGTC
TGCTGGACGCGGCTTCGGACGGCAACCTCGCGGGCGTCAGGCAGCTCCTG
GCCGCCGGGGCCCCCCTCCATGCGCGTGACCTGGAAGGGCACACTCCGCT
TCACCGCGCTTCGGTGGCGGGACACGCAGGCGTGGTCGAGCAGCTCCTCA
GCAGCGGCGACGGCAGGGCACCACCCTTGGGCGGGGCAAGCCCATCGTCC
AGCGGGATGGTGCAGGAGCCGCCTAGCCTTAAGTGGCAGGCCAGCATGGA
AGGGCCCGTGCTGGTGCCCTCCGTGTCTCTGGTAAAACGGACAACGCTGG
ATGCTCGCGATCACTCGGGCTCGTGCCCGATACACCTGGCCGCGGCGTGC
GGACACGCAGACGTCGTCCAGGTCCTGCTCCAGCATGGCGCCGACGTCTC
GGGCTCGAACGGCGTGGCGCAAAGCCCTCTCCACACAGCGGCGGCCGGAC
TGGACTCCGGAGACTGCGTGCGCCTCCTGCTGGACGCGGGAGGGGACTTG
AAGGCGAGAGACAGTGCCGGCAGAACGCCTCTGCACGTCGCTGCCTCCGC
GGGGAACGCGATGGTTGTATCGATCTTGGTGGACGGCGGCGCGGAACTGG
AGGCCAGGGGGAACATCAGCAACCGCACGCCTCTGCACGAGGCTTGCGCG
AGCCTGGATGCGGGGAGCGTTAAGCGGTTGCTGCAGCACGGAGCGGACGA
GCGCGCGGTAGACATCGATGACCTCACGCCGGAGAACATGGTTTGCGAGA
GAATGACCGAAGAGCAGAAGGCGGCAGATCCTACAATCGCTCCAGTTGGA
GAAACCATTTGCCGCATGCTGACCGATGCACCCCAAGACAGGCTGTGGCG
GCGTCGGCGACTGCTGCCGTTGCTGCAGTGGCGCCAGCCACCGCCCGCTT
TCGACACGGGACCGGGTACAGCCGTTACCGTTGATGCCGGGTCGGGTCAG
TCCATCTTCGAGCTTGTGGTGTGCGAGGAAGAGGGCATCATGCGCAACAT
CGTGTCCTATTTGTGAGCTGCTGGGAGCCAGTGCGACGGACCTCCTCCAG
GTGAACAACCGCCCGAATTGGACGCGTGGATCGACCACAGCACCTGGCCA
GGCTTACGCTCCATCGTGACCGAGGCATACCAAATCTCAAGCCGCGAGCG
CTGGTCCAAGTTCCTGGGTGCGGGTCTGCTGGACGCGGCTTCGGACGGCA
ACCTCGCGGGCGTCAGGCAGCTCCTGGCCGCCGGGGCCCCCCTCCATGCG
CGTGACCTGGAAGGGCACACTCCGCTTCACCGCGCTTCGGTGGCGGGACA
CGCAGGCGTGGTCGAGCAGCTCCTCAGCAGCGGCGACGGCAGGGCACCAC
CCTTGGGCGGGGCAAGCCCATCGTCCAGCGGGATGGTGCAGGAGCCGCCT
AGCCTTAAGTGGCAGGCCAGCATGGAAGGGCCCGTGCTGGTGCCCTCCGT
GTCTCTGGTAAAACGGACAACGCTGGATGCTCGCGATCACTCGGGCTCGT
GCCCGATACACCTGGCCGCGGCGTGCGGACACGCAGACGTCGTCCAGGTC
CTGCTCCAGCATGGCGCCGACGTCTCGGGCTCGAACGGCGTGGCGCAAAG
CCCTCTCCACACAGCGGCGGCCGGACTGGACTCCGGAGACTGCGTGCGCC
TCCTGCTGGACGCGGGAGGGGACTTGAAGGCGAGAGACAGTGCCGGCAGA
ACGCCTCTGCACGTCGCTGCCTCCGCGGGGAACGCGATGGTTGTATCGAT
CTTGGTGGACGGCGGCGCGGAACTGGAGGCCAGGGGGAACATCAGCAACC
GCACGCCTCTGCACGAGGCTTGCGCGAGCCTGGATGCGGGGAGCGTTAAG
CGGTTGCTGCAGCACGGAGCGGACGAGCGCGCGGTAGACATCGATGACCT
CACGCCGGAGAACATGGTTTGCGAGAGAATGACCGAAGAGCAGAAGGCGG
CAGATCCTACAATCGCTCCAGTTGGAGAAACCATTTGCCGCATGCTGACC
GATGCACCCCAAGACAGGCTGTGGCGGCGTCGGCGACTGCTGCCGTTGCT
GCAGTGGCGCCAGCCACCGCCCGCTTTCGACACGGGACCGGGTACAGCCG
TTACCGTTGATGCCGGGTCGGGTCAGTCCATCTTCGAGCTTGTGGTGTGC
GAGGAAGAGGGCATCATGCGCAACATCGTGTCCTATTTGTGA
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