mRNA_Ecto-sp9_F_contig10258.271.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10258.271.1
Unique NamemRNA_Ecto-sp9_F_contig10258.271.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Molybdenum (cofactor sulfurase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D6_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.170e-56
Identity = 114/120 (95.00%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 PTLLRPRSSSS-AREPASPEPGRDSGGS-RSCSGGVGXXXXXXXRRGVDGGGVAAGRGRWPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG 354
            PTLLRPRSSSS AREPASPEPGRDSGGS RS SGGVGXXXXXXXRRGVDGGGVA GRGRWPLGP GLAYDREWAVVD RDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG
Sbjct:  761 PTLLRPRSSSSSAREPASPEPGRDSGGSSRSRSGGVGXXXXXXXRRGVDGGGVATGRGRWPLGPLGLAYDREWAVVDGRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG 880
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Molybdenum (cofactor sulfurase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE6_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.670e-38
Identity = 88/116 (75.86%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    7 LLRPRSSSSAREPASPEPGRDSGGSRSCSGGVGXXXXXXXRRGVDGGGVAAGRGRWPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG 354
            LLR RS   A  PASPEPGRDSGGS        XXXXXXX              RWPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG
Sbjct:  917 LLRQRSPFPAGAPASPEPGRDSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLG 1032
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Molybdenum (cofactor sulfurase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UC23_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.360e-13
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVL 345
            WP+GP+GL +DREWA+VD   +ALRL +V  M  IRP VDL    L V AP MPDLVL
Sbjct:  706 WPVGPTGLLFDREWALVDGHGQALRLNKVAQMRFIRPHVDLERQELVVAAPGMPDLVL 763
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: MOSC (domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUM3_VOLCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLP 348
            WP+GP+GL YDREWA+VD   + L LKQ P M  +RP VDL  GTLT+ AP   D+ +P
Sbjct:  533 WPIGPTGLLYDREWALVDDGGKVLTLKQCPRMALVRPVVDLTRGTLTIHAPH--DIHIP 589
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: MOSC (domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FJ47_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLP 348
            WP+GP+GL YDREWA+VD   + L LKQ P M  IRP VDL  GTL + AP+  D  LP
Sbjct:   28 WPIGPTGLLYDREWALVDDSGKVLTLKQCPRMALIRPVVDLTRGTLNIHAPK--DASLP 84
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: MOSC (domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FM01_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.440e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDL 339
            WP+GP+GL YDREWA+VD   + L LKQ P M  IRP VDL  GTL + AP+  +L
Sbjct:  128 WPIGPTGLLYDREWALVDDSGKVLTLKQCPRMALIRPVVDLTRGTLNIHAPKDANL 183
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Uncharacterized (protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D7S5_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.510e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLP 348
            WP+GP+GL YDREWA+VD   + L LKQ P M  IRP VDL  GTL + AP+  D  LP
Sbjct:  880 WPIGPTGLLYDREWALVDDSGKVLTLKQCPRMALIRPVVDLTRGTLNIHAPK--DASLP 936
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Molybdenum (cofactor sulfurase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BLE7_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDL 339
            WP+GP+GL +DREWA+VD   + L LKQ P M  IRP VDL  GTL + AP+  DL
Sbjct:  875 WPVGPTGLLFDREWALVDDSGKVLTLKQCPRMALIRPVVDLTRGTLAIHAPKDADL 930
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: MOSC (domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WZ30_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAP---RMPDLVL 345
            WP+GP+GL  DREWA+VD   + L LKQ P M  +RP VDLA+GTL + AP   R+P L L
Sbjct:  999 WPVGPTGLLLDREWALVDDSGKVLTLKQCPRMALVRPQVDLAAGTLVIAAPPDARVPPLTL 1059
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BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Match: Pyridoxal (phosphate-dependent transferase (Fragment) n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2F9Y1_9BASI)

HSP 1 Score: 70.9 bits (172), Expect = 7.000e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  172 WPLGPSGLAYDREWAVVDRRD-RALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPL 351
            W + P+GLAYDREW +VD R   AL  K+ P M  I P +DL+  TLT+TAP M DL+LPL
Sbjct:  527 WEIAPTGLAYDREWMLVDSRTGSALSQKRWPRMVLIHPHIDLSRQTLTITAPEMHDLILPL 587
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10258.271.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Molybdenum3.170e-5695.00cofactor sulfurase n=1 Tax=Ectocarpus siliculosus ... [more]
Molybdenum2.670e-3875.86cofactor sulfurase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Molybdenum4.360e-1360.34cofactor sulfurase n=2 Tax=Monodopsidaceae TaxID=4... [more]
MOSC1.080e-1255.93domain-containing protein (Fragment) n=1 Tax=Volvo... [more]
MOSC1.400e-1257.63domain-containing protein n=1 Tax=Volvox reticulif... [more]
MOSC1.440e-1257.14domain-containing protein n=2 Tax=Volvox reticulif... [more]
Uncharacterized1.510e-1257.63protein n=2 Tax=Volvox reticuliferus TaxID=1737510... [more]
Molybdenum1.530e-1257.14cofactor sulfurase n=1 Tax=Volvox africanus TaxID=... [more]
MOSC2.100e-1255.74domain-containing protein n=1 Tax=Chlamydomonas sc... [more]
Pyridoxal7.000e-1255.74phosphate-dependent transferase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10258contigEcto-sp9_F_contig10258:298..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D7G4D6
Preferred nameABA3
KEGG koko:K15631
KEGG ReactionR11583
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006464,GO:0006605,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0006732,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008265,GO:0008299,GO:0008610,GO:0009000,GO:0009058,GO:0009266,GO:0009408,GO:0009409,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009687,GO:0009688,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009743,GO:0009755,GO:0009756,GO:0009987,GO:0010033,GO:0010118,GO:0010182,GO:0015031,GO:0015833,GO:0016053,GO:0016106,GO:0016114,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017038,GO:0018315,GO:0019538,GO:0019637,GO:0019752,GO:0023052,GO:0032787,GO:0032870,GO:0033036,GO:0033365,GO:0034613,GO:0036211,GO:0042040,GO:0042221,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043288,GO:0043289,GO:0043412,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0045036,GO:0045037,GO:0045184,GO:0046165,GO:0046394,GO:0046483,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051189,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0065002,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072330,GO:0072594,GO:0072596,GO:0072598,GO:0098542,GO:1901360,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902644,GO:1902645
EggNOG free text desc.molybdenum cofactor sulfurtransferase activity
EggNOG OGsCOG0520@1,KOG2142@2759
EC2.8.1.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928222.4068673-CDS-Ecto-sp9_F_contig10258:297..5521622928222.4068673-CDS-Ecto-sp9_F_contig10258:297..552Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10258 298..552 +
1692277801.2886171-CDS-Ecto-sp9_F_contig10258:297..5521692277801.2886171-CDS-Ecto-sp9_F_contig10258:297..552Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10258 298..552 +
1622928222.4237099-CDS-Ecto-sp9_F_contig10258:1055..11541622928222.4237099-CDS-Ecto-sp9_F_contig10258:1055..1154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10258 1056..1154 +
1692277801.3002403-CDS-Ecto-sp9_F_contig10258:1055..11541692277801.3002403-CDS-Ecto-sp9_F_contig10258:1055..1154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10258 1056..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10258.271.1prot_Ecto-sp9_F_contig10258.271.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10258 298..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10258.271.1

>prot_Ecto-sp9_F_contig10258.271.1 ID=prot_Ecto-sp9_F_contig10258.271.1|Name=mRNA_Ecto-sp9_F_contig10258.271.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
PTLLRPRSSSSAREPASPEPGRDSGGSRSCSGGVGGGSGGSGRRGVDGGG
VAAGRGRWPLGPSGLAYDREWAVVDRRDRALRLKQVPDMCQIRPFVDLAS
GTLTVTAPRMPDLVLPLG
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mRNA from alignment at Ecto-sp9_F_contig10258:298..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10258.271.1 ID=mRNA_Ecto-sp9_F_contig10258.271.1|Name=mRNA_Ecto-sp9_F_contig10258.271.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=857bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10258:298..1154+ (Ectocarpus species9 EcSCA_722f female)
CCAACGCTTTTGCGCCCACGCTCTTCTTCTTCTGCGAGGGAGCCGGCTTC
ACCTGAGCCAGGCAGAGACAGCGGCGGCAGCCGTAGCTGCAGCGGGGGTG
TAGGTGGTGGCAGCGGCGGCTCCGGGCGGCGGGGCGTCGACGGTGGAGGG
GTGGCGGCAGGGCGCGGTAGGTGGCCTCTGGGCCCTTCGGGGCTGGCGTA
CGACCGGGAGTGGGCCGTCGTAGACCGCCGCGATCGAGCTCTCCGCCTAA
AGCAGGTGCGTTTTTCGTGTTGCCACCGCGTAACCCTTGAGCGGATGTCT
GTGTGTGTGAAGTGTCCTTCATGTTTACATCGACCACGCTGACCGGCTGC
CCAATTGAAAATTGTACGTCAGTGTGTGTGTATTGATTATTATTTTTTTT
TAATCGACTATTCTAACCGGCTTCCCGAAGAATAAAGGGTAGTCTTTACC
GGGAGATATACTGGCCAACCCTAGCTTTCCAGTCCACCCACGTCTGCAAG
TGCGTGCGTGCGCTTGCTCGCTCGCGCGTGTGCGGCCGGTGCTTCGTGCA
TGCACGAGTTCGTTAGGGTTCGGTGACGGCACCCGTTTCGTGAGAACAGG
AGGAGGCAGCAGCGATGGCCACGCCTCTCGCCGCGCAACCCCTTGCTAGT
TTGTCAGATTGCTCCCGTCAGATTTTTCTCTCCACACGCTCGGGCATGAC
GATGCTTTCTCACAACACGCGCGCGCGTGTGTGTGGCCCCGTGTTTTTTT
TTATCCAGGTGCCCGACATGTGCCAGATCAGACCATTCGTGGACCTGGCT
TCCGGCACGCTTACCGTCACCGCTCCGAGGATGCCTGACCTGGTTCTCCC
GCTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10258:298..1154+

>mRNA_Ecto-sp9_F_contig10258.271.1 ID=mRNA_Ecto-sp9_F_contig10258.271.1|Name=mRNA_Ecto-sp9_F_contig10258.271.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10258:298..1154+ (Ectocarpus species9 EcSCA_722f female)
CCAACGCTTTTGCGCCCACGCTCTTCTTCTTCTGCGAGGGAGCCGGCTTC
ACCTGAGCCAGGCAGAGACAGCGGCGGCAGCCGTAGCTGCAGCGGGGGTG
TAGGTGGTGGCAGCGGCGGCTCCGGGCGGCGGGGCGTCGACGGTGGAGGG
GTGGCGGCAGGGCGCGGTAGGTGGCCTCTGGGCCCTTCGGGGCTGGCGTA
CGACCGGGAGTGGGCCGTCGTAGACCGCCGCGATCGAGCTCTCCGCCTAA
AGCAGCCAACGCTTTTGCGCCCACGCTCTTCTTCTTCTGCGAGGGAGCCG
GCTTCACCTGAGCCAGGCAGAGACAGCGGCGGCAGCCGTAGCTGCAGCGG
GGGTGTAGGTGGTGGCAGCGGCGGCTCCGGGCGGCGGGGCGTCGACGGTG
GAGGGGTGGCGGCAGGGCGCGGTAGGTGGCCTCTGGGCCCTTCGGGGCTG
GCGTACGACCGGGAGTGGGCCGTCGTAGACCGCCGCGATCGAGCTCTCCG
CCTAAAGCAGGTGCCCGACATGTGCCAGATCAGACCATTCGTGGACCTGG
CTTCCGGCACGCTTACCGTCACCGCTCCGAGGATGCCTGACCTGGTTCTC
CCGCTGGGGGTGCCCGACATGTGCCAGATCAGACCATTCGTGGACCTGGC
TTCCGGCACGCTTACCGTCACCGCTCCGAGGATGCCTGACCTGGTTCTCC
CGCTGGGG
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