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Homology
BLAST of mRNA_Ecto-sp9_F_contig10256.270.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI) HSP 1 Score: 318 bits (815), Expect = 3.030e-91 Identity = 254/512 (49.61%), Postives = 269/512 (52.54%), Query Frame = 1
Query: 1 LQAIECLRGLLGEYRGGSSDGTRSPXXXXXXXXXXXXXXXXXXXXXXXXXATTAANGELARVTQGRLEWLTQRLRAQLSSELAAALRQADPLTAAPGKGAXXXXXXXXXXXXKGLRRQTRNDGGKGWLASRAGMVPVFPPASLGGIPSAAAAAGAAAPGRGSAGVGGERGGLGRGERGPVGLLRARARPAG*VRRCRPKRRLTSRPLVTVLEARLTAKNKMYW*FFGGFGNDYSANFS*ESMVS*RACTVADETRHGILFRGGCVGEMCLAMYMVSGCLKWPMGRRCGE*SMVSRCSWCRRVSLANGLYMRVFVQ*RVLMENALIDLLSYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLGAAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLEEAAASPGAWRAVDWKNGPRSSTPVTPSAVALCRLFSDITERYRPLRDPLKQLRFAKHVQEPVLRSVKKG 1536
++AIECLRGLLGEYR GSSDG RSP XXXXXXXXXXXXXXXXXXXXXXXX TT A+GELARVTQGRLEWLTQRLRAQLSSELAAALRQADPL AAP KGA G G +G RAG +GP L R RPL+ +L A+ A E RGG G + Y G ++++R RR+ AQLG AAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKL EAAASPGAWRAVDWKNGPRSSTPVTPSAVALCRLFSD+TERYRPLRDPLKQLRFAKHVQEPVLRS G
Sbjct: 177 MKAIECLRGLLGEYRDGSSDGARSPSXXXXXXXXXXXXXXXXXXXXXXXXPTTTADGELARVTQGRLEWLTQRLRAQLSSELAAALRQADPLAAAPVKGAGTGNGTRG-----GXXXXXXFGGRRGTTEGRAGS-----------------------------------------RQGPEWFLSFLLRALE-----------AYRPLLLLLALPPPAEG-------------------------------APELEAREAGRGG--GSVDPLAYFARGL------------ALLAR----RRLR-----------------------------------------------------------------AQLGEAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAAASPGAWRAVDWKNGPRSSTPVTPSAVALCRLFSDVTERYRPLRDPLKQLRFAKHVQEPVLRSASGG 517
BLAST of mRNA_Ecto-sp9_F_contig10256.270.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY6_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.220e-60 Identity = 209/458 (45.63%), Postives = 233/458 (50.87%), Query Frame = 1
Query: 1 LQAIECLRGLLGEYRGGSSDGTRSPXXXXXXXXXXXXXXXXXXXXXXXXXATTAANGELARVTQGRLEWLTQRLRAQLSSELAAALRQADPLTAAPGKGAXXXXXXXXXXXXKGLRRQTRNDGGKGWLASRAGMVPVFPPASLGGIPSAAAAAGAAAPGRGSAGVGGERGGLGRGERGPVGLLRARARPAG*VRRCRPKRRLTSRPLVTVLEARLTAKNKMYW*FFGGFGNDYSANFS*ESMVS*RACTVADETRHGILFRGGCVGEMCLAMYMVSGCLKWPMGRRCGE*SMVSRCSWCRRVSLANGLYMRVFVQ*RVLMENALIDLLSYSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLGAAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLEEAAASPGAWRAVDWK 1374
++AIECLRGLLGE+RG SSDG RSPXXXXXXXXXXXXXXXXXXXXXXXXXATTAA GELARVTQGRLEWL QRLRAQLSSELAAALRQADPL AAPGKGA G + SRA + P +L A R G P+ S P+ + R + + GG + + ++ + ++ VA + FR GE P R V R W +R R L+ L++L + AQLGA AADESLLSHTVEEALAFDRCLDREAGYAECPARFP QTWPRCVEVFAQGEQRFERWMESDAKAAKAKL EA ASPGAWRAVDWK
Sbjct: 218 MKAIECLRGLLGEFRGSSSDGARSPXXXXXXXXXXXXXXXXXXXXXXXXXATTAAYGELARVTQGRLEWLRQRLRAQLSSELAAALRQADPLAAAPGKGA-------------------------GTVNSRARV--------------------------------------------PPKMLAATTRLVGLQFGGSPRPNPPS-PVGGSVVRRASGGS-------GGAAGNGDSVWALDGLLE----PVA------VRFRFHFEGER-------------PTNR-------VDRPEWFL------SFLLRALEAYRPLL--LLLELPRPAEGAPELEAREAGWGGGSVDPLAYFARGLALLARRRLRAQLGAVAADESLLSHTVEEALAFDRCLDREAGYAECPARFPRQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAVASPGAWRAVDWK 560
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1693 |
| Cds size | 576 |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 119.4 |
| Seed ortholog evalue | 1.8e-24 |
| Seed eggNOG ortholog | 2880.D8LBJ7 |
| KEGG ko | ko:K20474 |
| EggNOG free text desc. | regulation of signal transduction involved in mitotic G2 DNA damage checkpoint |
| EggNOG OGs | KOG2218@1,KOG2218@2759 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928222.2348607-UTR-Ecto-sp9_F_contig10256:2..836 | 1622928222.2348607-UTR-Ecto-sp9_F_contig10256:2..836 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 3..836 - |
| 1692277801.2332375-UTR-Ecto-sp9_F_contig10256:2..836 | 1692277801.2332375-UTR-Ecto-sp9_F_contig10256:2..836 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 3..836 - |
| 1622928222.247471-UTR-Ecto-sp9_F_contig10256:1249..1379 | 1622928222.247471-UTR-Ecto-sp9_F_contig10256:1249..1379 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 1250..1379 - |
| 1692277801.2440436-UTR-Ecto-sp9_F_contig10256:1249..1379 | 1692277801.2440436-UTR-Ecto-sp9_F_contig10256:1249..1379 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 1250..1379 - |
| 1622928222.335525-UTR-Ecto-sp9_F_contig10256:1789..1942 | 1622928222.335525-UTR-Ecto-sp9_F_contig10256:1789..1942 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 1790..1942 - |
| 1692277801.2554293-UTR-Ecto-sp9_F_contig10256:1789..1942 | 1692277801.2554293-UTR-Ecto-sp9_F_contig10256:1789..1942 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig10256 1790..1942 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928222.3463297-CDS-Ecto-sp9_F_contig10256:2457..2641 | 1622928222.3463297-CDS-Ecto-sp9_F_contig10256:2457..2641 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10256 2458..2641 - |
| 1692277801.2710743-CDS-Ecto-sp9_F_contig10256:2457..2641 | 1692277801.2710743-CDS-Ecto-sp9_F_contig10256:2457..2641 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10256 2458..2641 - |
| 1622928222.3679504-CDS-Ecto-sp9_F_contig10256:3552..3944 | 1622928222.3679504-CDS-Ecto-sp9_F_contig10256:3552..3944 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10256 3553..3944 - |
| 1692277801.2798457-CDS-Ecto-sp9_F_contig10256:3552..3944 | 1692277801.2798457-CDS-Ecto-sp9_F_contig10256:3552..3944 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10256 3553..3944 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10256.270.1 >prot_Ecto-sp9_F_contig10256.270.1 ID=prot_Ecto-sp9_F_contig10256.270.1|Name=mRNA_Ecto-sp9_F_contig10256.270.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=192bp
LQAIECLRGLLGEYRGGSSDGTRSPSPAAAASAAAGRGDGDKHDGAGGGG ATTAANGELARVTQGRLEWLTQRLRAQLSSELAAALRQADPLTAAPGKGA GTGNATGGGGGGKGLRRQTRNDGGKGWLASRAGMVPVFPPASLGGIPSAA AAAGAAAPGRGSAGVGGERGGLGRGERGPVGLLRARARPAG* back to topmRNA from alignment at Ecto-sp9_F_contig10256:3..3944- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig10256.270.1 ID=mRNA_Ecto-sp9_F_contig10256.270.1|Name=mRNA_Ecto-sp9_F_contig10256.270.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3942bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10256:3..3944- (Ectocarpus species9 EcSCA_722f female) CTTCAGGCAATCGAGTGTCTCCGCGGCCTGCTTGGGGAGTACCGTGGCGG
CAGCAGCGACGGCACAAGATCGCCATCACCGGCAGCGGCAGCCTCAGCTG
CGGCTGGGCGAGGGGATGGCGACAAGCACGATGGTGCCGGTGGTGGCGGG
GCGACGACAGCGGCGAACGGCGAGCTCGCGAGGGTGACCCAGGGACGTCT
GGAGTGGCTCACGCAGCGCCTAAGGGCTCAGCTCTCCTCCGAGCTCGCCG
CCGCTCTTCGCCAGGCGGACCCCCTCACGGCCGCCCCCGGAAAGGGGGCC
GGAACTGGAAATGCAACCGGGGGGGGGGGGGGGGGGAAGGGGCTTCGGAG
GCAGACGAGGAACGACGGAGGGAAGGGCTGGCTCGCGTCAAGGTGACCCA
GGGGGGGGGAAGCTTTGACCGTGCGTGGTTGTGCCGCCTGTTTGTGTGTT
CCGGAGAGATCAGGGAGTCCTGTCCGTTGCGAAAGAGGGGGGGGGAGGTG
GTCTTGTGGTGGTGCTTCTCGCTCCCAGCGCTAAACCTGCCGCTCTCAAA
CGCACTCTAAGAGGGACACCCTGAGCCGTGAACTCAAGGACTCGCGTGCT
GCAAAAAGTGTTGGTTTGTAGGAACACGCACACACCCCGCGCACACAAAA
ACCCACGCCTTCATATACTCACACCACCGAATATTTCCTTCTTTCTTCCA
GGCGGCAACCACCCGTCTCATTGTACTGCAGTTCGGCGGATCGCCACGGC
CCAACCCACCGTCTCCAGTTGGTGGCAGCGCCGTGAGACGAGCTTCCGAC
GGCAGCGGTGGGGCAGCGGGGAACGGGAACTCGGTGTGGGCGTTGGACAA
TCTCCTTGAGCCGGTCGCGGTGCGCTTCCGCTTTCACTTCGAGGGGGAGA
GGCCGACCAACAGAGTCGACCGTGAGTAATCTGCCTCTGTGTGTTGAGGC
TTTGGAGACGTGCACCGTGGTATCTCCAACTACCCCATACCATTCCATGT
AGGTCGAGTCCCTCCCCCGCATCCGGACCCACCTCGCTTCCCCGCCGCCC
CTCCTCACCACATGATGATATGTGCGATACTTCTGTTCTCATCCCCCCCT
CCTCCCCTCCCCTTCCTGCGGCCCACCTCCCTCCCCTCTTCACCGCCACG
GAACCCCTCAGCTTGAATACACCTGTCACTCTTTATCCCTCTATTCCATC
TACAGTACCCGGGTCCTTGGTGGTCATTTTCCATCGTGTTTTTCTTCCGC
TTGGTTCCTCATCCCCCCCCCCCCTCCTCCCCCCCTCCCCTTCTTGGGTG
CAGGGCCGGAATGGTTCCTGTCTTTCCTCCTGCGAGCCTTGGAGGCATAC
CGTCCGCTGCTGCTGCTGCTGGCGCTGCCGCCCCCGGCCGAGGGAGCGCC
GGAGTTGGAGGCGAGAGAGGCGGGCTGGGGAGGGGGGAGCGTGGACCCGT
TGGCCTACTTCGCGCGAGGGCTCGCCCTGCTGGCTAGGTGCGTCGGTGTC
GACCGAAACGGCGCCTGACATCACGCCCCCTTGTGACGGTTCTTGAAGCT
CGATTAACCGCAAAGAACAAGATGTATTGGTGATTTTTTGGCGGCTTTGG
AAACGATTACTCTGCCAATTTTTCCTAGGAATCTATGGTTTCCTGAAGAG
CTTGTACCGTCGCGGATGAAACTCGGCACGGAATATTGTTTAGGGGTGGG
TGTGTGGGTGAGATGTGCTTGGCGATGTATATGGTATCGGGTTGTCTCAA
ATGGCCGATGGGCCGCAGGTGTGGTGAGTGAAGTATGGTGAGTCGCTGTA
GTTGGTGTAGGCGCGTGAGTTTGGCAAACGGTTTGTACATGAGGGTGTTT
GTGCAGTAAAGAGTGTTGATGGAAAACGCCCTTATCGACCTCCTCTCTTA
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGCCGTCTCTGCCT
CTGCCTCTCTCTCTCTTTTTCAAACCAACAAACACACACGCACACGCACA
AGGCGACGACTACGCGCCCAGCTGGGCGCGGCTGCCGCAGACGAGTCGCT
CCTGTCCCACACCGTCGAGGAGGCGCTAGCTTTCGACAGATGCCTGGACC
GGGAGGCGGGGTACGCCGAGTGTCCCGCCAGGTTCCCTCACCAGACGTGG
CCGAGGTGAGGTTGAATGATTCCGCTGCTGTCTTCGTTCTTCCATGCATA
CGTTCGTTTTGAAAAGAAAAGATATAACATGGTGTTGAATAGAACAAATT
GTTAACGTTGGCGCTGACGAAAAACAAAGGAGTTTTGTTTAGGGGGGAGT
TACTGGGCTGAGAAAACCAAGAGTTGAGAGATGTCTGAGGCTGGTTGGCG
TGGCGTTGAGGAAAATAAACAAATGGAGTTTGACGCTGAGCATGCAGATC
AAGAGGTTATCGGTGCCAGGATTATCCGTGGGGGGTCGCAATCGCGCGCG
AACGTGTACGTACGTACGTATGCATGATGATTGCACACATACGTACACGA
TGCGCCTCCACAACTCGTACTTGAATTGAAGTACACGATTAACCTCCACA
TACGTACGTGAACAGGTGCGTAGAGGTCTTCGCCCAGGGCGAGCAGCGTT
TCGAGCGGTGGATGGAGTCGGACGCCAAGGCCGCAAAGGCCAAGCTAGAG
GAAGCCGCGGCGTCGCCGGGTGCCTGGAGAGCGGTCGATTGGAAGGTGAA
AAGTTGGTTGATCACTGCTTCCTTTGTGGTTGGTTTGTGGTTTGACGGGA
TGACACGAGGGAGGAGCAAAAGACGGCTCAATACAGCGCCGAGGTCAGCG
GTCGCTGTACAGCGTTGAGTTGATTGAACCCCACACACACAAATATTGCG
CACAATATCGATAATCACCAACATGTTTGTACTCCACGACACTTTTCCAT
GATGGCATCACTTTCCTCCCGCCCCCTTCCCTCCCGTGTACCCGTTTGGC
TGGCATGCCCCCCATAGCCGGGGACTCACCCCTCCCCCCCCCCCGTGAAA
ATGTCACCGTTCATCCCCTCCTTACCACTACCACGCCCCACTTCCTTTGC
GACGGCCGGCGGCGGCGGTGTGCTGGCGTTCTGATATTTTGCGCATTTTT
TTTCGCAGAACGGTCCTCGGTCTTCGACGCCAGTCACGCCCTCGGCGGTG
GCGCTGTGCCGACTGTTTTCCGACATCACGGAGCGGTACCGCCCTCTACG
TGACCCCCTGAAGCAGCTACGCTTCGCGAAACATGTCCAGGAGCCGGTCC
TGCGATCGGTAAAAAAGGGGAGCTAGCTACACTGTGACTACCTCACGACG
GTGGAGGGGGATGAGGGGGGGGTTGGTGTTTCGTTGCCGCAACGTCCTCG
ATGATGAGCTCGCCGCCGTTTGATAGCAGAGGGACTCCAACTAGCCGCCT
CTTGTTTCACTTGCTGCACGAGGCCCAGGCCCATGTCTTGCCGTCACGTA
TGCCGTAGCTCTTTCCTGCCTTCATTTCCTCCTCTCCAAGCGAGTATATT
GCGTGCTTAGGGTCAAGGTGTTTCCTTGCGTGCACCCGGAGGGAGAAACG
ACGGGGCCGGTACAGTACCTTCAGCACGACGGTCAATTCGAAAAAGCCAA
CGGACAACATTCACCAACAAGCCCAAAACGACAGCAATCCTGTCTCAACA
CCAGGCAACACCAGGCAAAATTTTCAACAATTTATCAAGAGGATGATGAC
CACACGACCCTACCAATCCTACGATCGATATGCTTCACATCACCCCACAC
CTGACCCAGAACGATCGATCCACCACCAAAACTTGACGACAGTACCGCGA
CATGCTGTACCGGAGGGGCAACGATTGCCGCCTCGACACGGTCTTCCGAG
ACTCCGGCGGGGGGGATGAGACTCAAGAGGCATCGGGGGCCGGGGGGGGG
GCGGGGGGGGGAACCTCGGCGGCCGACGGGCTAACGGCAACC back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig10256:3..3944- >mRNA_Ecto-sp9_F_contig10256.270.1 ID=mRNA_Ecto-sp9_F_contig10256.270.1|Name=mRNA_Ecto-sp9_F_contig10256.270.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1152bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10256:3..3944- (Ectocarpus species9 EcSCA_722f female) CTTCAGGCAATCGAGTGTCTCCGCGGCCTGCTTGGGGAGTACCGTGGCGG CAGCAGCGACGGCACAAGATCGCCATCACCGGCAGCGGCAGCCTCAGCTG CGGCTGGGCGAGGGGATGGCGACAAGCACGATGGTGCCGGTGGTGGCGGG GCGACGACAGCGGCGAACGGCGAGCTCGCGAGGGTGACCCAGGGACGTCT GGAGTGGCTCACGCAGCGCCTAAGGGCTCAGCTCTCCTCCGAGCTCGCCG CCGCTCTTCGCCAGGCGGACCCCCTCACGGCCGCCCCCGGAAAGGGGGCC GGAACTGGAAATGCAACCGGGGGGGGGGGGGGGGGGAAGGGGCTTCGGAG GCAGACGAGGAACGACGGAGGGAAGGGCTGGCTCGCGTCAAGCTTCAGGC AATCGAGTGTCTCCGCGGCCTGCTTGGGGAGTACCGTGGCGGCAGCAGCG ACGGCACAAGATCGCCATCACCGGCAGCGGCAGCCTCAGCTGCGGCTGGG CGAGGGGATGGCGACAAGCACGATGGTGCCGGTGGTGGCGGGGCGACGAC AGCGGCGAACGGCGAGCTCGCGAGGGTGACCCAGGGACGTCTGGAGTGGC TCACGCAGCGCCTAAGGGCTCAGCTCTCCTCCGAGCTCGCCGCCGCTCTT CGCCAGGCGGACCCCCTCACGGCCGCCCCCGGAAAGGGGGCCGGAACTGG AAATGCAACCGGGGGGGGGGGGGGGGGGAAGGGGCTTCGGAGGCAGACGA GGAACGACGGAGGGAAGGGCTGGCTCGCGTCAAGGGCCGGAATGGTTCCT GTCTTTCCTCCTGCGAGCCTTGGAGGCATACCGTCCGCTGCTGCTGCTGC TGGCGCTGCCGCCCCCGGCCGAGGGAGCGCCGGAGTTGGAGGCGAGAGAG GCGGGCTGGGGAGGGGGGAGCGTGGACCCGTTGGCCTACTTCGCGCGAGG GCTCGCCCTGCTGGCTAGGGCCGGAATGGTTCCTGTCTTTCCTCCTGCGA GCCTTGGAGGCATACCGTCCGCTGCTGCTGCTGCTGGCGCTGCCGCCCCC GGCCGAGGGAGCGCCGGAGTTGGAGGCGAGAGAGGCGGGCTGGGGAGGGG GGAGCGTGGACCCGTTGGCCTACTTCGCGCGAGGGCTCGCCCTGCTGGCT AG back to top
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