mRNA_Ecto-sp9_F_contig10254.269.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 392 bits (1008), Expect = 1.820e-136 Identity = 195/242 (80.58%), Postives = 211/242 (87.19%), Query Frame = 1
Query: 1 FITMAAMATVTFFNASTAKTLSLDLSLSGPLPEISPETVCADWAAWVPPQSGPAVVMQVEAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEE 726
F MAAMA VT +A+TAK +SLDL PLP ISPE VCADWAAWVPP SGP VVMQVEAGHDV+MSDADA+WLADPMKDFSLPGV+ SSIVASRG FP EVGHVWG+T+CMGFI FRTTASRVAMREFVTVMNALVLE KDDQIAVNIAARDLGIVW QEDSDMRY +STG G+G +DSLSD DN PFTVTLLPHSAYTRIC +TPVSN TVVAHC ++KTP+ K DWMH MDLWAVDE+
Sbjct: 7 FAGMAAMAIVTS-SATTAKNVSLDLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQVEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDED 247
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 237 bits (604), Expect = 4.260e-74 Identity = 117/184 (63.59%), Postives = 140/184 (76.09%), Query Frame = 1
Query: 175 VEAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEE 726
VEAG DVIMSDADA+WL DP KDF+LP VIDSS+VASRGKFP +G WG+TMCMGF+ FR T RV + EF+ VM+ALV + KDDQI+VN+AA +LGIVW QE SDMRY +S G G +D+L D++N PF+VTLLPH+AYTR+C TP+SN TVVAHC A KT + K WM LW D E
Sbjct: 137 VEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRV-VGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQE-SDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNE 318
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 177 bits (448), Expect = 2.210e-50 Identity = 123/320 (38.44%), Postives = 151/320 (47.19%), Query Frame = 1
Query: 91 LPEISPETVCADWAAWVPPQSGPAVVMQV--------------------------------------------------------------------------EAGH-DVIMSDADAVWLADPMKD-FSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVA-MREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNG----------------------------PFTVTLLPHSAYTRICTTTPVSN-ATVVAHCRATKTPEG-KIDWMHSMDLWAVDEEP 729
LP I+ + C DWAAW+PP+S PAVVMQV E G+ DVIMSDADA+WLADP KD FS IVASRG +P + WGST+CMGFI FR A VA M+ F+ VM LV++ KDDQI+VN AA+ LGIVW ++SDMRYE+STG G G++ L +N PF VTLLPHSAYTR+C +SN TVVAHC + G K WM +LW+V ++P
Sbjct: 27 LPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVW-DKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.320e-46 Identity = 87/189 (46.03%), Postives = 119/189 (62.96%), Query Frame = 1
Query: 160 AVVMQVEAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEE 726
A + + AG DV+MSDADA+WL DP DF+ +DS++VASR P + H WG+T+CMGF FFR S AM+ F+TV+ +V E DDQ AVN A LG+VW SDM + ST G G++++++ + P VTLLPH+ YTR C TP+SN T+VAHC ++ EG WM LW + ++
Sbjct: 158 ATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGS--AMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPT-SDMDFTNSTRPGTGVIENIT-ANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDD 342
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Acetyltransferase ((Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.080e-44 Identity = 83/184 (45.11%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 175 VEAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEE 726
+ AG DV+MSDADA+WL DP D + +DS++VASR P + H WG+T+CMGF FFR S AM+ F+TV+ + E +DQIAVN A L +VW SDM + +T G G++++++ D G VTLLPH+ YTR C TP+SN T+VAHC ++ EG WM LW + ++
Sbjct: 238 LNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGS--AMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPM-SDMNFTDNTRPGTGVIENIT-VDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDD 417
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.960e-44 Identity = 87/187 (46.52%), Postives = 118/187 (63.10%), Query Frame = 1
Query: 166 VMQVEAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEE 726
V ++AG DV+MSDADAVWL DPM DF DSSIVASRG P + WG+T+CMGF+ FR ++ A+ +F+ V+ E ++DQ AVN+A + L +VW SDM + ST G+G+V+S+ ++ TV+LLPH+ YTR C TP+S TVVAHC +T EG WM LW V ++
Sbjct: 218 VCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPT-SDMSFSDSTRSGVGVVNSIYSGES--LTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDD 399
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 155 bits (391), Expect = 4.130e-44 Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 178 EAGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAV 444
EAGHDVIMSDADA+WLADPMKDFSLPGVIDSSIVASRGK P EVG VWG+TMCMGFI FR TA+R AM +FVTVMNALV E +DDQIAV
Sbjct: 60 EAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.760e-38 Identity = 105/271 (38.75%), Postives = 128/271 (47.23%), Query Frame = 1
Query: 175 VEAGH-DVIMSDADAVWLADPMKD-FSLPGVIDSSIVASRGKFPTEVGHVWGSTMCMGFIFFRTTASRVA-MREFVTVMNALVLERKDDQ-----------------------------------------------------IAVNIAARDLGIVWKQEDSDMRYEQSTGLGMGLVDSLSDKDNG----------------------------PFTVTLLPHSAYTRICTTTPVSN-ATVVAHCRATKTPEG-KIDWMHSMDLWAVDEEP 729
+E GH DVIMSDADA+WLADP KD FS G I+ASRG +P E WGST+CMGFI FR A VA M+ F+ VM LV++ KDDQ I+VN AA+ LGIVW ++SDMRYE+STG G G++ L +N PF V LLPHSAYTR C +SN TVVAHC + G K WM +LW+V ++P
Sbjct: 79 LEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFR--ARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVW-DKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TK26_METSI) HSP 1 Score: 70.9 bits (172), Expect = 8.730e-11 Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 1
Query: 181 AGHDVIMSDADAVWLADPMKDFSLPGVIDSSIVASRGK-FPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDSDMRYE----QSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLWAVDEEP 729
AG D++ SDADAVWL DP+ + + +V ++G FP+E G +C G +F R+ A + EF + + ++ +DDQ AVN VW D RYE + + + S KD + +LPH + R+ + VAH A + KID + LW VD P
Sbjct: 80 AGDDIVHSDADAVWLRDPLARLT---ATSADLVFTQGTVFPSETLQRRGFVVCCGLMFIRSNAGAI---EFWRNVRDVAVDVRDDQWAVNKVIDQSDCVWTLTD---RYEAPCFDTVFHASRFIITGSMKD---LAIEVLPHHEFPRLME---LGENPFVAHPLADSPIDDKIDVLSESGLWFVDRPP 252
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Thiorhodococcus drewsii AZ1 TaxID=765913 RepID=G2E8H9_9GAMM) HSP 1 Score: 68.2 bits (165), Expect = 5.180e-10 Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 1
Query: 187 HDVIMSDADAVWLADPMKDFSLPGVID--SSIVASRGK-FPTEVGHVWGSTMCMGFIFFRTTASRVAMREFVTVMNALVLERKDDQIAVNIAARDLGIVWKQEDS-DMRYEQSTGLGMGLVDSLSDKDNGPFTVTLLPHSAYTRICTTTPVSNATVVAHCRATKTPEGKIDWMHSMDLW 711
H +I SDADAVW+ DP LP + D + +V S+G +P +V G +C GF R T +R F+ + A V +DDQ++VN + G+ W E+ + + + + + +++ P +V++LPH + R+ + VS +VAH + KT KI + + LW
Sbjct: 81 HWLIHSDADAVWMRDP-----LPIIADCATDMVFSQGTVWPPDVHARHGIVLCCGFFSLRNTGP---VRRFMAQLEARVTLDRDDQVSVNRLMDEGGLEWAVEEPYTIPFRDTVFRASHRI--IRSREDHPVSVSVLPHHLFPRLMDGS-VSEV-IVAHPLSPKTCADKIAVLSQLGLW 247 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10254.269.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10254.269.1 >prot_Ecto-sp9_F_contig10254.269.1 ID=prot_Ecto-sp9_F_contig10254.269.1|Name=mRNA_Ecto-sp9_F_contig10254.269.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=244bp MAAMATVTFFNASTAKTLSLDLSLSGPLPEISPETVCADWAAWVPPQSGPback to top mRNA from alignment at Ecto-sp9_F_contig10254:1032..4546+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10254.269.1 ID=mRNA_Ecto-sp9_F_contig10254.269.1|Name=mRNA_Ecto-sp9_F_contig10254.269.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3515bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10254:1032..4546+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10254:1032..4546+ >mRNA_Ecto-sp9_F_contig10254.269.1 ID=mRNA_Ecto-sp9_F_contig10254.269.1|Name=mRNA_Ecto-sp9_F_contig10254.269.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10254:1032..4546+ (Ectocarpus species9 EcSCA_722f female)back to top |