mRNA_Ecto-sp9_F_contig10232.260.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10232.260.1
Unique NamemRNA_Ecto-sp9_F_contig10232.260.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10232.260.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.150e-40
Identity = 83/100 (83.00%), Postives = 85/100 (85.00%), Query Frame = -2 
Query:    3 ERLVDGSSNPARTGEGDGNDEGIGLSRPPVHDTRLRSIGLELESVGLFAREAVASAVRVSGWAPPSPSPTGGRDGXXXXXXXXEAVLGGRDAAGVGRAVL 302
            ERLVDGSSNPARTGEGDGNDE I LSRP VH+TRLRS+GLELESVGLFAREAVA AVRVSGWA PSP PTGGRDG        EAVLGGRDA GVGRAVL
Sbjct: 2923 ERLVDGSSNPARTGEGDGNDEDICLSRPSVHNTRLRSLGLELESVGLFAREAVAFAVRVSGWAHPSPPPTGGRDGGGDGDEGDEAVLGGRDA-GVGRAVL 3021
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BLAST of mRNA_Ecto-sp9_F_contig10232.260.1 vs.
Match: Methyl-accepting (transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.830e-32
Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = -2 
Query:    3 ERLVDGSSN-PARTGEGDGNDEGIGLSRPPVHDTRLRSIGLELESVGLFAREAVASAVRVSGWAPPSPSPTGGRDGXXXXXXXX--EAVLGGRDAAGVGRAVL 302
            ERLVDGSSN PAR GE DGNDE  GLSRP VHDTRL+S+GLELESVGL AREAVAS  RV GWAPPSPSPTGGRD XXXXXXXX   +VLG RDA  VGRAVL
Sbjct: 1586 ERLVDGSSNNPARAGESDGNDEDKGLSRPSVHDTRLQSLGLELESVGLLAREAVASVTRVGGWAPPSPSPTGGRDXXXXXXXXXXDNSVLGRRDAC-VGRAVL 1687
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10232.260.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.150e-4083.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Methyl-accepting2.830e-3280.58transducer domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10232contigEcto-sp9_F_contig10232:3821..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.986993-CDS-Ecto-sp9_F_contig10232:3820..41231622928219.986993-CDS-Ecto-sp9_F_contig10232:3820..4123Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3821..4123 +
1692277800.3555837-CDS-Ecto-sp9_F_contig10232:3820..41231692277800.3555837-CDS-Ecto-sp9_F_contig10232:3820..4123Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3821..4123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10232.260.1prot_Ecto-sp9_F_contig10232.260.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10232 3821..4123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10232.260.1

>prot_Ecto-sp9_F_contig10232.260.1 ID=prot_Ecto-sp9_F_contig10232.260.1|Name=mRNA_Ecto-sp9_F_contig10232.260.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
GRTALPTPAASRPPSTASSSSSPSPPPSLPPVGEGEGGAQPLTRTADATA
SLAKRPTDSSSRPMDRRRVSWTGGRERPMPSSLPSPSPVRAGLLLPSTRR
S
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mRNA from alignment at Ecto-sp9_F_contig10232:3821..4125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10232.260.1 ID=mRNA_Ecto-sp9_F_contig10232.260.1|Name=mRNA_Ecto-sp9_F_contig10232.260.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=305bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:3821..4125+ (Ectocarpus species9 EcSCA_722f female)
GGGAGAACTGCTCTGCCGACACCGGCGGCGTCTCGCCCTCCGAGCACGGC
TTCATCGTCGTCGTCGCCGTCGCCGCCCCCGTCCCTTCCTCCGGTAGGAG
AGGGAGAAGGGGGGGCCCAGCCGCTGACACGCACGGCGGACGCCACAGCC
TCCCTCGCAAAAAGGCCGACGGACTCCAGCTCCAGGCCAATGGACCGCAG
GCGGGTGTCGTGGACGGGGGGGCGCGAGAGGCCGATGCCCTCGTCGTTGC
CGTCGCCTTCCCCGGTCCGAGCGGGATTGCTGCTGCCGTCAACTAGGCGC
TCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10232:3821..4125+

>mRNA_Ecto-sp9_F_contig10232.260.1 ID=mRNA_Ecto-sp9_F_contig10232.260.1|Name=mRNA_Ecto-sp9_F_contig10232.260.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:3821..4125+ (Ectocarpus species9 EcSCA_722f female)
GGGAGAACTGCTCTGCCGACACCGGCGGCGTCTCGCCCTCCGAGCACGGC
TTCATCGTCGTCGTCGCCGTCGCCGCCCCCGTCCCTTCCTCCGGTAGGAG
AGGGAGAAGGGGGGGCCCAGCCGCTGACACGCACGGCGGACGCCACAGCC
TCCCTCGCAAAAAGGCCGACGGACTCCAGCTCCAGGCCAATGGACCGCAG
GCGGGTGTCGTGGACGGGGGGGCGCGAGAGGCCGATGCCCTCGTCGTTGC
CGTCGCCTTCCCCGGTCCGAGCGGGATTGCTGCTGCCGTCAACTAGGCGC
TCGGGGAGAACTGCTCTGCCGACACCGGCGGCGTCTCGCCCTCCGAGCAC
GGCTTCATCGTCGTCGTCGCCGTCGCCGCCCCCGTCCCTTCCTCCGGTAG
GAGAGGGAGAAGGGGGGGCCCAGCCGCTGACACGCACGGCGGACGCCACA
GCCTCCCTCGCAAAAAGGCCGACGGACTCCAGCTCCAGGCCAATGGACCG
CAGGCGGGTGTCGTGGACGGGGGGGCGCGAGAGGCCGATGCCCTCGTCGT
TGCCGTCGCCTTCCCCGGTCCGAGCGGGATTGCTGCTGCCGTCAACTAGG
CGCTCG
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