mRNA_Ecto-sp9_F_contig10232.259.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10232.259.1
Unique NamemRNA_Ecto-sp9_F_contig10232.259.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10232.259.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.140e-50
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 2 
Query:    2 IGRMLAVAGRAAADVESVRRALVVAEEKMVGMQAEVDEAVQETDRLRAENAALEESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNSPLETHHHRLPGEE 313
            IGRML VAGRAAADVESVRRALVVAEEKMVGMQAEVDEAVQETDRLRAENAAL ESLCEVADAMSKSLPTRDRVPLTETGPDSVSPA TNSPLET HHRLPGEE
Sbjct: 3061 IGRMLVVAGRAAADVESVRRALVVAEEKMVGMQAEVDEAVQETDRLRAENAALGESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAATNSPLETPHHRLPGEE 3164
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BLAST of mRNA_Ecto-sp9_F_contig10232.259.1 vs.
Match: Methyl-accepting (transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.250e-41
Identity = 91/114 (79.82%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:    2 IGRMLAVAGRAAADVESVRRALVVAEEKMV-----------GMQAEVDEAVQETDRLRAENAALEESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNSPLETHHHRLPGE 310
            IG+MLAVAGRAAADVESVRRALVVAEEK+            G  AEVDEAV+ETDRLRAENA LEESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNS LE  H+ LPGE
Sbjct: 1719 IGQMLAVAGRAAADVESVRRALVVAEEKVRPTRDGMSRDSDGTTAEVDEAVRETDRLRAENATLEESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNSSLENPHYPLPGE 1832
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10232.259.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.140e-5096.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Methyl-accepting2.250e-4179.82transducer domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10232contigEcto-sp9_F_contig10232:2503..3721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size313
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10232.259.1prot_Ecto-sp9_F_contig10232.259.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10232 2503..3711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.0333269-CDS-Ecto-sp9_F_contig10232:2502..26371622928220.0333269-CDS-Ecto-sp9_F_contig10232:2502..2637Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 2503..2637 -
1692277800.3630936-CDS-Ecto-sp9_F_contig10232:2502..26371692277800.3630936-CDS-Ecto-sp9_F_contig10232:2502..2637Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 2503..2637 -
1622928220.0516334-CDS-Ecto-sp9_F_contig10232:3233..33261622928220.0516334-CDS-Ecto-sp9_F_contig10232:3233..3326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3234..3326 -
1692277800.37059-CDS-Ecto-sp9_F_contig10232:3233..33261692277800.37059-CDS-Ecto-sp9_F_contig10232:3233..3326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3234..3326 -
1622928220.0681605-CDS-Ecto-sp9_F_contig10232:3636..37111622928220.0681605-CDS-Ecto-sp9_F_contig10232:3636..3711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3637..3711 -
1692277800.3786204-CDS-Ecto-sp9_F_contig10232:3636..37111692277800.3786204-CDS-Ecto-sp9_F_contig10232:3636..3711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 3637..3711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.0850186-UTR-Ecto-sp9_F_contig10232:3711..37211622928220.0850186-UTR-Ecto-sp9_F_contig10232:3711..3721Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10232 3712..3721 -
1692277800.3876376-UTR-Ecto-sp9_F_contig10232:3711..37211692277800.3876376-UTR-Ecto-sp9_F_contig10232:3711..3721Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10232 3712..3721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10232.259.1

>prot_Ecto-sp9_F_contig10232.259.1 ID=prot_Ecto-sp9_F_contig10232.259.1|Name=mRNA_Ecto-sp9_F_contig10232.259.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
MLAVAGRAAADVESVRRALVVAEEKMVGMQAEVDEAVQETDRLRAENAAL
EESLCEVADAMSKSLPTRDRVPLTETGPDSVSPAPTNSPLETHHHRLPGE
E
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mRNA from alignment at Ecto-sp9_F_contig10232:2503..3721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10232.259.1 ID=mRNA_Ecto-sp9_F_contig10232.259.1|Name=mRNA_Ecto-sp9_F_contig10232.259.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1219bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:2503..3721- (Ectocarpus species9 EcSCA_722f female)
GATCGGCCGGATGTTGGCGGTGGCCGGGCGGGCGGCCGCGGACGTGGAGT
CCGTGCGTCGGGCGCTTGTCGTCGCCGAAGAGAAGGTGAAGCCCACGCGT
TACGGAATGAGCCGGGATAGCGAGGGCACCACGGTATGTAGCCGGTTCAC
CGTAAAGCTGTAGCCAGGGCATGGTAGATCCCGCTCGGTGCGTAGTTCTG
GAGCGAGTCTGCTGGTCTGAGAAAACAAGAGCAGTGTTTACCCTATCCTC
GCAGAGCGCCGTTGTGGACAACAAGTAAAGTTACAAGATATTCATGACAT
TTTGTTCCCGAACCAAGTAGACAACCGTCCGGCCAAAATATTTACCGTAC
GCACAGGGACACAACCGCACTGATTTGTTTTTTGTTTTCCGGCAGATGGT
CGGCATGCAGGCCGAGGTTGACGAGGCTGTCCAGGAGACAGACCGTCTTC
GAGCGGAGAATGCGGCGTTGGAAGAATCCCTCTGCGAGGTATGCGTGTTC
AGCAGCAGCAGCAGTGTCAGCCAGCCCCCTCGCTGTCCACCACCCCGCAC
GGGCAGTAAACCGCTGGCTAGGTTAGCCTACGGTACCTTGGCGACGGTGC
TTGTCTTGCTCGTGTGGTACACAGCTGTAGTGGAGTCACAAGTAGCGTGG
CGGCCTTTTCGAGACCTGTGTACCGGTGGTGTGTCTGTTTTTGCTGTTGC
ACCTGTTTGCTGTACATGTGCAGTGTGGGAGGGTTGGCGATGCAACGTAA
GAGCTACCGTAGTCACCGAGACGACTCCTACCGGCACAACCTCGGGGGGG
GTTGAGGACCTGGTCGTCGCTCGGTCGTACTGTAACGCCAACAAACGAGA
CCGACAATTTTGCGCCCGCCTGACCGATAAACCGCGGGAATAGCCTACTT
ATGCTTTCATGACACAGGACTGGTGACTGAGACAAAGGCAACGGCCCCGC
TGACATTGAGAAGCAATCGCGCGCCTCCCTGCTGTCCTACCCGACGACTC
ATGAACCAGCTCGTCGACAACCCGCTAACCCTTGCCCTAACCCGAAGACA
CGACGAATGCCTCTTTGTTTCTCCCACGCGACAGGTTGCCGACGCCATGT
CCAAGAGCCTGCCGACGCGGGACCGGGTACCCTTGACGGAAACCGGTCCC
GACAGCGTATCCCCCGCCCCCACCAACTCTCCGCTAGAGACCCACCACCA
CCGACTTCCCGGAGAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10232:2503..3721-

>mRNA_Ecto-sp9_F_contig10232.259.1 ID=mRNA_Ecto-sp9_F_contig10232.259.1|Name=mRNA_Ecto-sp9_F_contig10232.259.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:2503..3721- (Ectocarpus species9 EcSCA_722f female)
ATGTTGGCGGTGGCCGGGCGGGCGGCCGCGGACGTGGAGTCCGTGCGTCG
GGCGCTTGTCGTCGCCGAAGAGAAGATGTTGGCGGTGGCCGGGCGGGCGG
CCGCGGACGTGGAGTCCGTGCGTCGGGCGCTTGTCGTCGCCGAAGAGAAG
ATGGTCGGCATGCAGGCCGAGGTTGACGAGGCTGTCCAGGAGACAGACCG
TCTTCGAGCGGAGAATGCGGCGTTGGAAGAATCCCTCTGCGAGATGGTCG
GCATGCAGGCCGAGGTTGACGAGGCTGTCCAGGAGACAGACCGTCTTCGA
GCGGAGAATGCGGCGTTGGAAGAATCCCTCTGCGAGGTTGCCGACGCCAT
GTCCAAGAGCCTGCCGACGCGGGACCGGGTACCCTTGACGGAAACCGGTC
CCGACAGCGTATCCCCCGCCCCCACCAACTCTCCGCTAGAGACCCACCAC
CACCGACTTCCCGGAGAAGAAGTTGCCGACGCCATGTCCAAGAGCCTGCC
GACGCGGGACCGGGTACCCTTGACGGAAACCGGTCCCGACAGCGTATCCC
CCGCCCCCACCAACTCTCCGCTAGAGACCCACCACCACCGACTTCCCGGA
GAAGAA
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