mRNA_Ecto-sp9_F_contig10228.251.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10228.251.1
Unique NamemRNA_Ecto-sp9_F_contig10228.251.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10228.251.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB5_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 9.840e-102
Identity = 236/259 (91.12%), Postives = 238/259 (91.89%), Query Frame = -1 
Query:    1 LELDPSTSPTGGRAVSHTLPWARQRVQLRQQGRAAAPAAAAQSTTAGGVCGGVKAANLAGDIAPLFDRLGRMLTDVAPHLARLSAMEEDTPAPASGGXXXXXXGAEGEDATEPGELSWETLGLRADGGQQGGGSGARRSSRDSPPRGRREALAYPENASAFRQLVSTSSPAXXXXXXXXXXXAIVPMRGPPXXXXXXXXXXXXXXXXXVATPTRAERPPLASVSSTGXXXXXXXXXXXXXXXXXS-SRPWNGNGDSMDT 774
            LELDPSTSPTGGRAVSHTLPWARQRVQLRQQGRAAAPA       AGGVC GVKAA+LA DIAPLFDRLGRMLTDVAPHLARLSAMEEDT  PAS  XXXXX GAEGED  EPGELSWE LGLRADGGQQGGGSGARRSSRDSPPRGRREALAYP NASAFRQLVSTSSPAXXXXXXXXXXXAIVPMRGPPXXXXXXXXXXXXXXXX VATPTRAERPPLASVSSTGXXXXXXXXXXXXXXXXX  SRPWNGNG+SMDT
Sbjct:  514 LELDPSTSPTGGRAVSHTLPWARQRVQLRQQGRAAAPAXXXXXXXAGGVCRGVKAADLAADIAPLFDRLGRMLTDVAPHLARLSAMEEDTTVPASXXXXXXXAGAEGEDVAEPGELSWEALGLRADGGQQGGGSGARRSSRDSPPRGRREALAYPANASAFRQLVSTSSPAXXXXXXXXXXXAIVPMRGPPXXXXXXXXXXXXXXXXAVATPTRAERPPLASVSSTGXXXXXXXXXXXXXXXXXXXSRPWNGNGNSMDT 772
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10228.251.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.840e-10291.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10228contigEcto-sp9_F_contig10228:3346..4119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size774
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10228.251.1prot_Ecto-sp9_F_contig10228.251.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10228 3353..3886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.3187664-UTR-Ecto-sp9_F_contig10228:3345..33521622928219.3187664-UTR-Ecto-sp9_F_contig10228:3345..3352Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10228 3346..3352 +
1692277800.0000975-UTR-Ecto-sp9_F_contig10228:3345..33521692277800.0000975-UTR-Ecto-sp9_F_contig10228:3345..3352Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10228 3346..3352 +
1622928219.3434522-UTR-Ecto-sp9_F_contig10228:3886..41191622928219.3434522-UTR-Ecto-sp9_F_contig10228:3886..4119Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10228 3887..4119 +
1692277800.0363426-UTR-Ecto-sp9_F_contig10228:3886..41191692277800.0363426-UTR-Ecto-sp9_F_contig10228:3886..4119Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10228 3887..4119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.331587-CDS-Ecto-sp9_F_contig10228:3352..38861622928219.331587-CDS-Ecto-sp9_F_contig10228:3352..3886Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10228 3353..3886 +
1692277800.0226388-CDS-Ecto-sp9_F_contig10228:3352..38861692277800.0226388-CDS-Ecto-sp9_F_contig10228:3352..3886Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10228 3353..3886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10228.251.1

>prot_Ecto-sp9_F_contig10228.251.1 ID=prot_Ecto-sp9_F_contig10228.251.1|Name=mRNA_Ecto-sp9_F_contig10228.251.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MLSPLPFHGRLLPPLLLLLLLLLLLLRLPPVELTEARGGRSARVGVATAD
TDAVGGGGGGGGGGEGGPLIGTMAWMWMLMLLDVGAGLDVDTSCRNADAF
SGYANASRRPRGGESREERRAPLPPPCCPPSARRPRVSHESSPGSVASSP
SAPAAPPPPPPLAGAGVSSSIADRRAR*
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mRNA from alignment at Ecto-sp9_F_contig10228:3346..4119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10228.251.1 ID=mRNA_Ecto-sp9_F_contig10228.251.1|Name=mRNA_Ecto-sp9_F_contig10228.251.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10228:3346..4119+ (Ectocarpus species9 EcSCA_722f female)
CGTGTCCATGCTGTCGCCGTTGCCGTTCCACGGCCGGCTGCTACCGCCGT
TGTTGTTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCGGCTGCCACCTGTC
GAGCTAACGGAGGCGAGGGGGGGGCGCTCGGCTCGAGTCGGAGTCGCCAC
CGCCGACACGGACGCCGTCGGGGGCGGCGGCGGGGGCGGGGGCGGAGGCG
AAGGGGGACCCCTCATCGGAACGATGGCGTGGATGTGGATGTTGATGTTG
CTCGATGTCGGCGCCGGGCTGGACGTGGACACCAGCTGCCGGAACGCGGA
CGCATTCTCCGGGTACGCTAACGCTTCCCGCCGCCCCCGCGGGGGGGAGT
CTCGGGAGGAGCGCCGTGCGCCGCTACCCCCCCCCTGCTGCCCCCCGTCC
GCGCGGAGGCCCAGGGTTTCCCATGAGAGCTCCCCCGGCTCGGTCGCGTC
CTCTCCCTCCGCGCCAGCCGCGCCGCCGCCGCCGCCGCCGCTAGCGGGTG
CCGGTGTGTCCTCTTCCATCGCCGACAGACGTGCAAGGTGAGGCGCGACG
TCGGTGAGCATGCGCCCCAGGCGATCGAAGAGCGGGGCAATATCGCCGGC
TAGATTGGCGGCCTTGACCCCTCCACAGACCCCGCCCGCCGTCGTCGACT
GAGCGGCAGCGGCGGGGGCGGCGGCACGCCCCTGTTGCCGCAGCTGCACG
CGTTGCCGTGCCCACGGCAAGGTGTGAGAAACGGCGCGGCCACCAGTGGG
GCTGGTCGAAGGGTCTAACTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10228:3346..4119+

>mRNA_Ecto-sp9_F_contig10228.251.1 ID=mRNA_Ecto-sp9_F_contig10228.251.1|Name=mRNA_Ecto-sp9_F_contig10228.251.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10228:3346..4119+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGTCGCCGTTGCCGTTCCACGGCCGGCTGCTACCGCCGTTGTTGTT
GTTGCTGTTGTTGCTGCTGCTGCTGCTGCGGCTGCCACCTGTCGAGCTAA
CGGAGGCGAGGGGGGGGCGCTCGGCTCGAGTCGGAGTCGCCACCGCCGAC
ACGGACGCCGTCGGGGGCGGCGGCGGGGGCGGGGGCGGAGGCGAAGGGGG
ACCCCTCATCGGAACGATGGCGTGGATGTGGATGTTGATGTTGCTCGATG
TCGGCGCCGGGCTGGACGTGGACACCAGCTGCCGGAACGCGGACGCATTC
TCCGGGTACGCTAACGCTTCCCGCCGCCCCCGCGGGGGGGAGTCTCGGGA
GGAGCGCCGTGCGCCGCTACCCCCCCCCTGCTGCCCCCCGTCCGCGCGGA
GGCCCAGGGTTTCCCATGAGAGCTCCCCCGGCTCGGTCGCGTCCTCTCCC
TCCGCGCCAGCCGCGCCGCCGCCGCCGCCGCCGCTAGCGGGTGCCGGTGT
GTCCTCTTCCATCGCCGACAGACGTGCAAGGTGAATGCTGTCGCCGTTGC
CGTTCCACGGCCGGCTGCTACCGCCGTTGTTGTTGTTGCTGTTGTTGCTG
CTGCTGCTGCTGCGGCTGCCACCTGTCGAGCTAACGGAGGCGAGGGGGGG
GCGCTCGGCTCGAGTCGGAGTCGCCACCGCCGACACGGACGCCGTCGGGG
GCGGCGGCGGGGGCGGGGGCGGAGGCGAAGGGGGACCCCTCATCGGAACG
ATGGCGTGGATGTGGATGTTGATGTTGCTCGATGTCGGCGCCGGGCTGGA
CGTGGACACCAGCTGCCGGAACGCGGACGCATTCTCCGGGTACGCTAACG
CTTCCCGCCGCCCCCGCGGGGGGGAGTCTCGGGAGGAGCGCCGTGCGCCG
CTACCCCCCCCCTGCTGCCCCCCGTCCGCGCGGAGGCCCAGGGTTTCCCA
TGAGAGCTCCCCCGGCTCGGTCGCGTCCTCTCCCTCCGCGCCAGCCGCGC
CGCCGCCGCCGCCGCCGCTAGCGGGTGCCGGTGTGTCCTCTTCCATCGCC
GACAGACGTGCAAGGTGA
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